data_5M6R # _model_server_result.job_id v-V8JjUSq41prxkIOSAViA _model_server_result.datetime_utc '2024-11-05 15:25:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5M6R # _exptl.entry_id 5M6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.01 _cell.angle_gamma 90 _cell.entry_id 5M6R _cell.length_a 68.91 _cell.length_b 81.2 _cell.length_c 79.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 289 A CYS 261 1_555 C C 7J8 . A 7J8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale2 B SG CYS 289 B CYS 261 1_555 G C 7J8 . B 7J8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 402 n n P O2 PO4 sing 403 n n P O3 PO4 sing 404 n n P O4 PO4 sing 405 n n # _atom_sites.entry_id 5M6R _atom_sites.fract_transf_matrix[1][1] 0.014512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000763 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7J8 A 1 401 500 7J8 4PM . D 3 PO4 A 1 402 511 PO4 PO4 . E 3 PO4 A 1 403 512 PO4 PO4 . F 4 EPE A 1 404 600 EPE EPE . G 2 7J8 B 1 401 500 7J8 4PM . H 3 PO4 B 1 402 511 PO4 PO4 . I 5 HOH A 1 501 815 HOH HOH . I 5 HOH A 2 502 812 HOH HOH . I 5 HOH A 3 503 817 HOH HOH . I 5 HOH A 4 504 807 HOH HOH . I 5 HOH A 5 505 801 HOH HOH . I 5 HOH A 6 506 811 HOH HOH . I 5 HOH A 7 507 803 HOH HOH . I 5 HOH A 8 508 806 HOH HOH . I 5 HOH A 9 509 802 HOH HOH . I 5 HOH A 10 510 813 HOH HOH . I 5 HOH A 11 511 809 HOH HOH . I 5 HOH A 12 512 810 HOH HOH . I 5 HOH A 13 513 805 HOH HOH . I 5 HOH A 14 514 808 HOH HOH . I 5 HOH A 15 515 814 HOH HOH . J 5 HOH B 1 501 824 HOH HOH . J 5 HOH B 2 502 801 HOH HOH . J 5 HOH B 3 503 818 HOH HOH . J 5 HOH B 4 504 825 HOH HOH . J 5 HOH B 5 505 803 HOH HOH . J 5 HOH B 6 506 822 HOH HOH . J 5 HOH B 7 507 821 HOH HOH . J 5 HOH B 8 508 819 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 3 -12.852 29.4 -1.505 1 98.81 ? P PO4 403 A 1 HETATM 2 O O1 PO4 . . . E 3 -13.338 28.716 -2.87 1 97.47 ? O1 PO4 403 A 1 HETATM 3 O O2 PO4 . . . E 3 -12.074 30.769 -1.785 1 102.07 ? O2 PO4 403 A 1 HETATM 4 O O3 PO4 . . . E 3 -11.915 28.374 -0.698 1 94.85 ? O3 PO4 403 A 1 HETATM 5 O O4 PO4 . . . E 3 -14.157 29.863 -0.701 1 99.12 ? O4 PO4 403 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #