data_5M6R # _model_server_result.job_id ixnJSnfi4q2qaYQx2XtAMQ _model_server_result.datetime_utc '2024-11-29 19:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 5M6R # _exptl.entry_id 5M6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.01 _cell.angle_gamma 90 _cell.entry_id 5M6R _cell.length_a 68.91 _cell.length_b 81.2 _cell.length_c 79.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 289 A CYS 261 1_555 C C 7J8 . A 7J8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale2 B SG CYS 289 B CYS 261 1_555 G C 7J8 . B 7J8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 192 n n N1 C6 EPE sing 193 n n N1 C9 EPE sing 194 n n C2 C3 EPE sing 195 n n C2 H21 EPE sing 196 n n C2 H22 EPE sing 197 n n C3 N4 EPE sing 198 n n C3 H31 EPE sing 199 n n C3 H32 EPE sing 200 n n N4 C5 EPE sing 201 n n N4 C7 EPE sing 202 n n C5 C6 EPE sing 203 n n C5 H51 EPE sing 204 n n C5 H52 EPE sing 205 n n C6 H61 EPE sing 206 n n C6 H62 EPE sing 207 n n C7 C8 EPE sing 208 n n C7 H71 EPE sing 209 n n C7 H72 EPE sing 210 n n C8 O8 EPE sing 211 n n C8 H81 EPE sing 212 n n C8 H82 EPE sing 213 n n O8 HO8 EPE sing 214 n n C9 C10 EPE sing 215 n n C9 H91 EPE sing 216 n n C9 H92 EPE sing 217 n n C10 S EPE sing 218 n n C10 H101 EPE sing 219 n n C10 H102 EPE sing 220 n n S O1S EPE doub 221 n n S O2S EPE doub 222 n n S O3S EPE sing 223 n n O3S HOS3 EPE sing 224 n n # _atom_sites.entry_id 5M6R _atom_sites.fract_transf_matrix[1][1] 0.014512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000763 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7J8 A 1 401 500 7J8 4PM . D 3 PO4 A 1 402 511 PO4 PO4 . E 3 PO4 A 1 403 512 PO4 PO4 . F 4 EPE A 1 404 600 EPE EPE . G 2 7J8 B 1 401 500 7J8 4PM . H 3 PO4 B 1 402 511 PO4 PO4 . I 5 HOH A 1 501 815 HOH HOH . I 5 HOH A 2 502 812 HOH HOH . I 5 HOH A 3 503 817 HOH HOH . I 5 HOH A 4 504 807 HOH HOH . I 5 HOH A 5 505 801 HOH HOH . I 5 HOH A 6 506 811 HOH HOH . I 5 HOH A 7 507 803 HOH HOH . I 5 HOH A 8 508 806 HOH HOH . I 5 HOH A 9 509 802 HOH HOH . I 5 HOH A 10 510 813 HOH HOH . I 5 HOH A 11 511 809 HOH HOH . I 5 HOH A 12 512 810 HOH HOH . I 5 HOH A 13 513 805 HOH HOH . I 5 HOH A 14 514 808 HOH HOH . I 5 HOH A 15 515 814 HOH HOH . J 5 HOH B 1 501 824 HOH HOH . J 5 HOH B 2 502 801 HOH HOH . J 5 HOH B 3 503 818 HOH HOH . J 5 HOH B 4 504 825 HOH HOH . J 5 HOH B 5 505 803 HOH HOH . J 5 HOH B 6 506 822 HOH HOH . J 5 HOH B 7 507 821 HOH HOH . J 5 HOH B 8 508 819 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 4 -8.77 -2.233 18.417 1 163.3 ? N1 EPE 404 A 1 HETATM 2 C C2 EPE . . . F 4 -9.507 -2.199 17.135 1 159.37 ? C2 EPE 404 A 1 HETATM 3 C C3 EPE . . . F 4 -8.705 -1.504 16.053 1 155.86 ? C3 EPE 404 A 1 HETATM 4 N N4 EPE . . . F 4 -8.374 -0.148 16.469 1 155.51 ? N4 EPE 404 A 1 HETATM 5 C C5 EPE . . . F 4 -7.51 -0.249 17.639 1 159.23 ? C5 EPE 404 A 1 HETATM 6 C C6 EPE . . . F 4 -8.264 -0.893 18.785 1 163.04 ? C6 EPE 404 A 1 HETATM 7 C C7 EPE . . . F 4 -7.82 0.692 15.393 1 150.3 ? C7 EPE 404 A 1 HETATM 8 C C8 EPE . . . F 4 -8.886 1.492 14.657 1 142.06 ? C8 EPE 404 A 1 HETATM 9 O O8 EPE . . . F 4 -8.319 2.513 13.846 1 134.79 ? O8 EPE 404 A 1 HETATM 10 C C9 EPE . . . F 4 -9.652 -2.704 19.499 1 167.32 ? C9 EPE 404 A 1 HETATM 11 C C10 EPE . . . F 4 -10.183 -4.116 19.309 1 171.58 ? C10 EPE 404 A 1 HETATM 12 S S EPE . . . F 4 -8.939 -5.24 19.139 1 176.82 ? S EPE 404 A 1 HETATM 13 O O1S EPE . . . F 4 -8.418 -5.069 17.784 1 174.66 ? O1S EPE 404 A 1 HETATM 14 O O2S EPE . . . F 4 -9.536 -6.548 19.333 1 178.64 ? O2S EPE 404 A 1 HETATM 15 O O3S EPE . . . F 4 -7.949 -4.917 20.146 1 179.01 ? O3S EPE 404 A 1 HETATM 16 H H21 EPE . . . F 4 -10.422 -1.634 17.3 1 159.53 ? H21 EPE 404 A 1 HETATM 17 H H22 EPE . . . F 4 -9.833 -3.169 16.763 1 159.11 ? H22 EPE 404 A 1 HETATM 18 H H31 EPE . . . F 4 -9.269 -1.546 15.123 1 154.74 ? H31 EPE 404 A 1 HETATM 19 H H32 EPE . . . F 4 -7.781 -2.054 15.882 1 155.54 ? H32 EPE 404 A 1 HETATM 20 H H51 EPE . . . F 4 -7.173 0.735 17.962 1 159.27 ? H51 EPE 404 A 1 HETATM 21 H H52 EPE . . . F 4 -6.585 -0.795 17.461 1 159.22 ? H52 EPE 404 A 1 HETATM 22 H H61 EPE . . . F 4 -7.599 -0.981 19.642 1 164.55 ? H61 EPE 404 A 1 HETATM 23 H H62 EPE . . . F 4 -9.044 -0.211 19.121 1 163.22 ? H62 EPE 404 A 1 HETATM 24 H H71 EPE . . . F 4 -7.22 0.149 14.665 1 150.22 ? H71 EPE 404 A 1 HETATM 25 H H72 EPE . . . F 4 -7.139 1.425 15.823 1 151.07 ? H72 EPE 404 A 1 HETATM 26 H H81 EPE . . . F 4 -9.682 1.856 15.304 1 142.41 ? H81 EPE 404 A 1 HETATM 27 H H82 EPE . . . F 4 -9.409 0.841 13.957 1 141.63 ? H82 EPE 404 A 1 HETATM 28 H HO8 EPE . . . F 4 -8.932 2.673 13.081 1 133.52 ? HO8 EPE 404 A 1 HETATM 29 H H91 EPE . . . F 4 -10.51 -2.036 19.561 1 166.98 ? H91 EPE 404 A 1 HETATM 30 H H92 EPE . . . F 4 -9.194 -2.655 20.486 1 168.68 ? H92 EPE 404 A 1 HETATM 31 H H101 EPE . . . F 4 -10.929 -4.097 18.516 1 170.41 ? H101 EPE 404 A 1 HETATM 32 H H102 EPE . . . F 4 -10.837 -4.327 20.154 1 172.93 ? H102 EPE 404 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #