data_5M6U # _model_server_result.job_id F7NXNGCrA3FUWcN_ICcTAw _model_server_result.datetime_utc '2025-04-24 13:56:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5M6U # _exptl.entry_id 5M6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-azanyl-6-[[(1~{S})-1-(4-oxidanylidene-3-phenyl-pyrrolo[2,1-f][1,2,4]triazin-2-yl)ethyl]amino]pyrimidine-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M6U _cell.length_a 92.493 _cell.length_b 113.212 _cell.length_c 144.321 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H16 N8 O' _chem_comp.formula_weight 372.383 _chem_comp.id 7KA _chem_comp.mon_nstd_flag . _chem_comp.name 4-azanyl-6-[[(1~{S})-1-(4-oxidanylidene-3-phenyl-pyrrolo[2,1-f][1,2,4]triazin-2-yl)ethyl]amino]pyrimidine-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 7KA doub 1 n y C8 C7 7KA sing 2 n y C9 N1 7KA sing 3 n y C7 C6 7KA doub 4 n y N1 C6 7KA sing 5 n y N1 N2 7KA sing 6 n n C6 C5 7KA sing 7 n n N28 C24 7KA sing 8 n n N27 C26 7KA trip 9 n n N2 C3 7KA doub 10 n n C26 C25 7KA sing 11 n n C24 C25 7KA doub 12 n y C24 N23 7KA sing 13 n y C5 O10 7KA doub 14 n n C5 N4 7KA sing 15 n n C25 C20 7KA sing 16 n y N23 C22 7KA doub 17 n y C22 N21 7KA sing 18 n y C20 N21 7KA doub 19 n y C20 N19 7KA sing 20 n n C3 N4 7KA sing 21 n n C3 C17 7KA sing 22 n n N19 C17 7KA sing 23 n n N4 C11 7KA sing 24 n n C17 C29 7KA sing 25 n n C11 C16 7KA doub 26 n y C11 C12 7KA sing 27 n y C16 C15 7KA sing 28 n y C12 C13 7KA doub 29 n y C15 C14 7KA doub 30 n y C13 C14 7KA sing 31 n y C7 H1 7KA sing 32 n n C8 H2 7KA sing 33 n n C9 H3 7KA sing 34 n n C12 H4 7KA sing 35 n n C13 H5 7KA sing 36 n n C14 H6 7KA sing 37 n n C15 H7 7KA sing 38 n n C16 H8 7KA sing 39 n n C17 H9 7KA sing 40 n n N19 H10 7KA sing 41 n n C22 H11 7KA sing 42 n n N28 H12 7KA sing 43 n n N28 H13 7KA sing 44 n n C29 H14 7KA sing 45 n n C29 H15 7KA sing 46 n n C29 H16 7KA sing 47 n n # _atom_sites.entry_id 5M6U _atom_sites.fract_transf_matrix[1][1] 0.010812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 7KA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 7KA _pdbx_nonpoly_scheme.auth_mon_id LSW _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7KA . . . C 3 38.448 14.064 31.665 1 98.05 ? N1 7KA 1101 A 1 HETATM 2 N N2 7KA . . . C 3 37.492 14.149 32.683 1 98.13 ? N2 7KA 1101 A 1 HETATM 3 C C3 7KA . . . C 3 37.759 14.649 33.845 1 97.09 ? C3 7KA 1101 A 1 HETATM 4 N N4 7KA . . . C 3 39.025 15.129 34.141 1 103.26 ? N4 7KA 1101 A 1 HETATM 5 C C5 7KA . . . C 3 40.022 15.076 33.216 1 101.54 ? C5 7KA 1101 A 1 HETATM 6 C C6 7KA . . . C 3 39.732 14.508 31.904 1 100.67 ? C6 7KA 1101 A 1 HETATM 7 C C7 7KA . . . C 3 40.473 14.313 30.761 1 101.74 ? C7 7KA 1101 A 1 HETATM 8 C C8 7KA . . . C 3 39.615 13.729 29.828 1 101.63 ? C8 7KA 1101 A 1 HETATM 9 C C9 7KA . . . C 3 38.394 13.591 30.406 1 100.22 ? C9 7KA 1101 A 1 HETATM 10 O O10 7KA . . . C 3 41.139 15.492 33.452 1 105.89 ? O10 7KA 1101 A 1 HETATM 11 C C11 7KA . . . C 3 39.334 15.712 35.375 1 106.26 ? C11 7KA 1101 A 1 HETATM 12 C C12 7KA . . . C 3 40.005 15.014 36.376 1 106.18 ? C12 7KA 1101 A 1 HETATM 13 C C13 7KA . . . C 3 40.296 15.658 37.568 1 106 ? C13 7KA 1101 A 1 HETATM 14 C C14 7KA . . . C 3 39.926 16.984 37.758 1 106.35 ? C14 7KA 1101 A 1 HETATM 15 C C15 7KA . . . C 3 39.261 17.679 36.763 1 107.1 ? C15 7KA 1101 A 1 HETATM 16 C C16 7KA . . . C 3 38.972 17.045 35.569 1 107.79 ? C16 7KA 1101 A 1 HETATM 17 C C17 7KA . . . C 3 36.628 14.65 34.842 1 92.98 ? C17 7KA 1101 A 1 HETATM 18 N N19 7KA . . . C 3 35.365 14.805 34.107 1 93.15 ? N19 7KA 1101 A 1 HETATM 19 C C20 7KA . . . C 3 34.872 16.066 33.797 1 87.58 ? C20 7KA 1101 A 1 HETATM 20 N N21 7KA . . . C 3 35.622 17.148 34.04 1 85.31 ? N21 7KA 1101 A 1 HETATM 21 C C22 7KA . . . C 3 35.197 18.372 33.77 1 86.18 ? C22 7KA 1101 A 1 HETATM 22 N N23 7KA . . . C 3 34.007 18.601 33.232 1 73.05 ? N23 7KA 1101 A 1 HETATM 23 C C24 7KA . . . C 3 33.183 17.594 32.941 1 82.45 ? C24 7KA 1101 A 1 HETATM 24 C C25 7KA . . . C 3 33.586 16.26 33.217 1 82.71 ? C25 7KA 1101 A 1 HETATM 25 C C26 7KA . . . C 3 32.687 15.192 32.896 1 88.23 ? C26 7KA 1101 A 1 HETATM 26 N N27 7KA . . . C 3 31.986 14.328 32.655 1 94.75 ? N27 7KA 1101 A 1 HETATM 27 N N28 7KA . . . C 3 31.95 17.879 32.393 1 68.54 ? N28 7KA 1101 A 1 HETATM 28 C C29 7KA . . . C 3 36.644 13.312 35.579 1 92.84 ? C29 7KA 1101 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #