data_5M6X
#
_model_server_result.job_id            EMqg3MQXVs4rJU6f1lsb6w 
_model_server_result.datetime_utc      '2025-08-31 01:34:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":203}' 
#
_entry.id    5M6X 
#
_exptl.entry_id    5M6X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              81.3 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIFLUOROMAGNESATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.41 
_cell.angle_gamma         90 
_cell.entry_id            5M6X 
_cell.length_a            73.47 
_cell.length_b            66.69 
_cell.length_c            76.89 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 18 B THR 19 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc2 B OG1 THR 36 B THR 37 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc3 E MG MG . B MG 201 1_555 F O2B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc4 E MG MG . B MG 201 1_555 L O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc5 E MG MG . B MG 201 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 F O3B GDP . B GDP 202 1_555 G MG MGF . B MGF 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc7 G MG MGF . B MGF 203 1_555 L O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc8 D OG1 THR 18 I THR 19 1_555 H MG MG . I MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc9 D OG1 THR 36 I THR 37 1_555 H MG MG . I MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc10 H MG MG . I MG 201 1_555 I O1B GDP . I GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc11 H MG MG . I MG 201 1_555 N O HOH . I HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc12 H MG MG . I MG 201 1_555 N O HOH . I HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc13 I O3B GDP . I GDP 202 1_555 J MG MGF . I MGF 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc14 J MG MGF . I MGF 203 1_555 N O HOH . I HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
#
_chem_comp.formula           'F3 Mg -1' 
_chem_comp.formula_weight    81.3 
_chem_comp.id                MGF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIFLUOROMAGNESATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 MG MGF sing 282 n n 
MG F2 MGF sing 283 n n 
MG F3 MGF sing 284 n n 
#
_atom_sites.entry_id                     5M6X 
_atom_sites.fract_transf_matrix[1][1]    0.013611 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001289 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG B 1 201 681 MG MG . 
F 4 GDP B 1 202 680 GDP GDP . 
G 5 MGF B 1 203 1 MGF MGF . 
H 3 MG I 1 201 681 MG MG . 
I 4 GDP I 1 202 680 GDP GDP . 
J 5 MGF I 1 203 1 MGF MGF . 
K 6 HOH A 1 301 65 HOH HOH . 
K 6 HOH A 2 302 37 HOH HOH . 
K 6 HOH A 3 303 25 HOH HOH . 
K 6 HOH A 4 304 8 HOH HOH . 
K 6 HOH A 5 305 96 HOH HOH . 
K 6 HOH A 6 306 157 HOH HOH . 
K 6 HOH A 7 307 77 HOH HOH . 
K 6 HOH A 8 308 30 HOH HOH . 
K 6 HOH A 9 309 63 HOH HOH . 
K 6 HOH A 10 310 33 HOH HOH . 
K 6 HOH A 11 311 84 HOH HOH . 
K 6 HOH A 12 312 51 HOH HOH . 
K 6 HOH A 13 313 140 HOH HOH . 
K 6 HOH A 14 314 117 HOH HOH . 
K 6 HOH A 15 315 91 HOH HOH . 
K 6 HOH A 16 316 2 HOH HOH . 
K 6 HOH A 17 317 16 HOH HOH . 
K 6 HOH A 18 318 13 HOH HOH . 
K 6 HOH A 19 319 155 HOH HOH . 
K 6 HOH A 20 320 61 HOH HOH . 
K 6 HOH A 21 321 133 HOH HOH . 
K 6 HOH A 22 322 56 HOH HOH . 
K 6 HOH A 23 323 135 HOH HOH . 
K 6 HOH A 24 324 90 HOH HOH . 
K 6 HOH A 25 325 26 HOH HOH . 
K 6 HOH A 26 326 147 HOH HOH . 
K 6 HOH A 27 327 218 HOH HOH . 
K 6 HOH A 28 328 170 HOH HOH . 
K 6 HOH A 29 329 127 HOH HOH . 
K 6 HOH A 30 330 41 HOH HOH . 
K 6 HOH A 31 331 55 HOH HOH . 
K 6 HOH A 32 332 24 HOH HOH . 
K 6 HOH A 33 333 27 HOH HOH . 
K 6 HOH A 34 334 217 HOH HOH . 
K 6 HOH A 35 335 132 HOH HOH . 
K 6 HOH A 36 336 215 HOH HOH . 
K 6 HOH A 37 337 78 HOH HOH . 
K 6 HOH A 38 338 139 HOH HOH . 
K 6 HOH A 39 339 59 HOH HOH . 
K 6 HOH A 40 340 50 HOH HOH . 
K 6 HOH A 41 341 212 HOH HOH . 
K 6 HOH A 42 342 35 HOH HOH . 
K 6 HOH A 43 343 102 HOH HOH . 
K 6 HOH A 44 344 19 HOH HOH . 
K 6 HOH A 45 345 144 HOH HOH . 
K 6 HOH A 46 346 105 HOH HOH . 
K 6 HOH A 47 347 138 HOH HOH . 
K 6 HOH A 48 348 173 HOH HOH . 
K 6 HOH A 49 349 223 HOH HOH . 
K 6 HOH A 50 350 193 HOH HOH . 
K 6 HOH A 51 351 176 HOH HOH . 
K 6 HOH A 52 352 166 HOH HOH . 
K 6 HOH A 53 353 113 HOH HOH . 
L 6 HOH B 1 301 62 HOH HOH . 
L 6 HOH B 2 302 14 HOH HOH . 
L 6 HOH B 3 303 169 HOH HOH . 
L 6 HOH B 4 304 228 HOH HOH . 
L 6 HOH B 5 305 222 HOH HOH . 
L 6 HOH B 6 306 4 HOH HOH . 
L 6 HOH B 7 307 72 HOH HOH . 
L 6 HOH B 8 308 186 HOH HOH . 
L 6 HOH B 9 309 194 HOH HOH . 
L 6 HOH B 10 310 80 HOH HOH . 
L 6 HOH B 11 311 161 HOH HOH . 
L 6 HOH B 12 312 38 HOH HOH . 
L 6 HOH B 13 313 89 HOH HOH . 
L 6 HOH B 14 314 22 HOH HOH . 
L 6 HOH B 15 315 3 HOH HOH . 
L 6 HOH B 16 316 203 HOH HOH . 
L 6 HOH B 17 317 204 HOH HOH . 
L 6 HOH B 18 318 17 HOH HOH . 
L 6 HOH B 19 319 108 HOH HOH . 
L 6 HOH B 20 320 20 HOH HOH . 
L 6 HOH B 21 321 92 HOH HOH . 
L 6 HOH B 22 322 34 HOH HOH . 
L 6 HOH B 23 323 64 HOH HOH . 
L 6 HOH B 24 324 151 HOH HOH . 
L 6 HOH B 25 325 206 HOH HOH . 
L 6 HOH B 26 326 45 HOH HOH . 
L 6 HOH B 27 327 43 HOH HOH . 
L 6 HOH B 28 328 15 HOH HOH . 
L 6 HOH B 29 329 75 HOH HOH . 
L 6 HOH B 30 330 192 HOH HOH . 
L 6 HOH B 31 331 145 HOH HOH . 
L 6 HOH B 32 332 208 HOH HOH . 
L 6 HOH B 33 333 220 HOH HOH . 
L 6 HOH B 34 334 94 HOH HOH . 
L 6 HOH B 35 335 190 HOH HOH . 
L 6 HOH B 36 336 168 HOH HOH . 
L 6 HOH B 37 337 185 HOH HOH . 
L 6 HOH B 38 338 11 HOH HOH . 
L 6 HOH B 39 339 207 HOH HOH . 
M 6 HOH H 1 301 36 HOH HOH . 
M 6 HOH H 2 302 47 HOH HOH . 
M 6 HOH H 3 303 88 HOH HOH . 
M 6 HOH H 4 304 86 HOH HOH . 
M 6 HOH H 5 305 205 HOH HOH . 
M 6 HOH H 6 306 40 HOH HOH . 
M 6 HOH H 7 307 58 HOH HOH . 
M 6 HOH H 8 308 79 HOH HOH . 
M 6 HOH H 9 309 167 HOH HOH . 
M 6 HOH H 10 310 120 HOH HOH . 
M 6 HOH H 11 311 196 HOH HOH . 
M 6 HOH H 12 312 29 HOH HOH . 
M 6 HOH H 13 313 225 HOH HOH . 
M 6 HOH H 14 314 5 HOH HOH . 
M 6 HOH H 15 315 44 HOH HOH . 
M 6 HOH H 16 316 21 HOH HOH . 
M 6 HOH H 17 317 31 HOH HOH . 
M 6 HOH H 18 318 6 HOH HOH . 
M 6 HOH H 19 319 199 HOH HOH . 
M 6 HOH H 20 320 49 HOH HOH . 
M 6 HOH H 21 321 12 HOH HOH . 
M 6 HOH H 22 322 18 HOH HOH . 
M 6 HOH H 23 323 83 HOH HOH . 
M 6 HOH H 24 324 70 HOH HOH . 
M 6 HOH H 25 325 126 HOH HOH . 
M 6 HOH H 26 326 214 HOH HOH . 
M 6 HOH H 27 327 103 HOH HOH . 
M 6 HOH H 28 328 125 HOH HOH . 
M 6 HOH H 29 329 69 HOH HOH . 
M 6 HOH H 30 330 54 HOH HOH . 
M 6 HOH H 31 331 7 HOH HOH . 
M 6 HOH H 32 332 112 HOH HOH . 
M 6 HOH H 33 333 172 HOH HOH . 
M 6 HOH H 34 334 211 HOH HOH . 
M 6 HOH H 35 335 148 HOH HOH . 
M 6 HOH H 36 336 121 HOH HOH . 
M 6 HOH H 37 337 115 HOH HOH . 
M 6 HOH H 38 338 52 HOH HOH . 
M 6 HOH H 39 339 156 HOH HOH . 
M 6 HOH H 40 340 201 HOH HOH . 
M 6 HOH H 41 341 187 HOH HOH . 
M 6 HOH H 42 342 114 HOH HOH . 
M 6 HOH H 43 343 183 HOH HOH . 
M 6 HOH H 44 344 162 HOH HOH . 
M 6 HOH H 45 345 175 HOH HOH . 
M 6 HOH H 46 346 188 HOH HOH . 
M 6 HOH H 47 347 122 HOH HOH . 
N 6 HOH I 1 301 119 HOH HOH . 
N 6 HOH I 2 302 28 HOH HOH . 
N 6 HOH I 3 303 48 HOH HOH . 
N 6 HOH I 4 304 32 HOH HOH . 
N 6 HOH I 5 305 109 HOH HOH . 
N 6 HOH I 6 306 106 HOH HOH . 
N 6 HOH I 7 307 165 HOH HOH . 
N 6 HOH I 8 308 46 HOH HOH . 
N 6 HOH I 9 309 39 HOH HOH . 
N 6 HOH I 10 310 60 HOH HOH . 
N 6 HOH I 11 311 182 HOH HOH . 
N 6 HOH I 12 312 224 HOH HOH . 
N 6 HOH I 13 313 227 HOH HOH . 
N 6 HOH I 14 314 154 HOH HOH . 
N 6 HOH I 15 315 57 HOH HOH . 
N 6 HOH I 16 316 158 HOH HOH . 
N 6 HOH I 17 317 180 HOH HOH . 
N 6 HOH I 18 318 181 HOH HOH . 
N 6 HOH I 19 319 159 HOH HOH . 
N 6 HOH I 20 320 197 HOH HOH . 
N 6 HOH I 21 321 213 HOH HOH . 
N 6 HOH I 22 322 110 HOH HOH . 
N 6 HOH I 23 323 231 HOH HOH . 
N 6 HOH I 24 324 210 HOH HOH . 
N 6 HOH I 25 325 178 HOH HOH . 
N 6 HOH I 26 326 68 HOH HOH . 
N 6 HOH I 27 327 23 HOH HOH . 
N 6 HOH I 28 328 67 HOH HOH . 
N 6 HOH I 29 329 124 HOH HOH . 
N 6 HOH I 30 330 229 HOH HOH . 
N 6 HOH I 31 331 200 HOH HOH . 
N 6 HOH I 32 332 146 HOH HOH . 
N 6 HOH I 33 333 226 HOH HOH . 
N 6 HOH I 34 334 97 HOH HOH . 
N 6 HOH I 35 335 1 HOH HOH . 
N 6 HOH I 36 336 76 HOH HOH . 
N 6 HOH I 37 337 198 HOH HOH . 
N 6 HOH I 38 338 179 HOH HOH . 
N 6 HOH I 39 339 130 HOH HOH . 
N 6 HOH I 40 340 164 HOH HOH . 
N 6 HOH I 41 341 123 HOH HOH . 
N 6 HOH I 42 342 136 HOH HOH . 
N 6 HOH I 43 343 160 HOH HOH . 
N 6 HOH I 44 344 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F1 MGF . . . J 5 -26.105 -20.8 28.193 1 12.59 ? F1 MGF 203 I 1 
HETATM 2 MG MG MGF . . . J 5 -24.421 -20.016 28.57 1 12.8 ? MG MGF 203 I 1 
HETATM 3 F F2 MGF . . . J 5 -23.509 -20.418 30.18 1 12.8 ? F2 MGF 203 I 1 
HETATM 4 F F3 MGF . . . J 5 -23.688 -18.756 27.352 1 12.97 ? F3 MGF 203 I 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#