data_5M6Z
#
_model_server_result.job_id            szpFTg8jTy63F_HlG-Vc9A 
_model_server_result.datetime_utc      '2024-11-21 16:33:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m6z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5M6Z 
#
_exptl.entry_id    5M6Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              186.057 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-PHOSPHOGLYCERIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.13 
_cell.angle_gamma         90 
_cell.entry_id            5M6Z 
_cell.length_a            35.88 
_cell.length_b            106.121 
_cell.length_c            50.472 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M6Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 218 A ASP 218 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc2 D O1B ADP . A ADP 503 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc3 D O3A ADP . A ADP 503 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc4 D O1A ADP . A ADP 503 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc5 E MG MG . A MG 504 1_555 G O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
#
_chem_comp.formula           'C3 H7 O7 P' 
_chem_comp.formula_weight    186.057 
_chem_comp.id                3PG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-PHOSPHOGLYCERIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 3PG doub 1 n n 
C1 O2 3PG sing 2 n n 
C1 C2 3PG sing 3 n n 
O2 HO2 3PG sing 4 n n 
C2 O3 3PG sing 5 n n 
C2 C3 3PG sing 6 n n 
C2 H2 3PG sing 7 n n 
O3 HO3 3PG sing 8 n n 
C3 O1P 3PG sing 9 n n 
C3 H31 3PG sing 10 n n 
C3 H32 3PG sing 11 n n 
O1P P 3PG sing 12 n n 
P O2P 3PG doub 13 n n 
P O3P 3PG sing 14 n n 
P O4P 3PG sing 15 n n 
O3P HOP3 3PG sing 16 n n 
O4P HOP4 3PG sing 17 n n 
#
_atom_sites.entry_id                     5M6Z 
_atom_sites.fract_transf_matrix[1][1]    0.027871 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003982 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3PG A 1 501 1 3PG 3PG . 
C 3 PO4 A 1 502 2 PO4 PO4 . 
D 4 ADP A 1 503 1 ADP ADP . 
E 5 MG A 1 504 1 MG MG . 
F 5 MG A 1 505 2 MG MG . 
G 6 HOH A 1 601 165 HOH HOH . 
G 6 HOH A 2 602 163 HOH HOH . 
G 6 HOH A 3 603 109 HOH HOH . 
G 6 HOH A 4 604 69 HOH HOH . 
G 6 HOH A 5 605 53 HOH HOH . 
G 6 HOH A 6 606 128 HOH HOH . 
G 6 HOH A 7 607 110 HOH HOH . 
G 6 HOH A 8 608 184 HOH HOH . 
G 6 HOH A 9 609 79 HOH HOH . 
G 6 HOH A 10 610 222 HOH HOH . 
G 6 HOH A 11 611 29 HOH HOH . 
G 6 HOH A 12 612 188 HOH HOH . 
G 6 HOH A 13 613 144 HOH HOH . 
G 6 HOH A 14 614 213 HOH HOH . 
G 6 HOH A 15 615 121 HOH HOH . 
G 6 HOH A 16 616 35 HOH HOH . 
G 6 HOH A 17 617 152 HOH HOH . 
G 6 HOH A 18 618 227 HOH HOH . 
G 6 HOH A 19 619 139 HOH HOH . 
G 6 HOH A 20 620 76 HOH HOH . 
G 6 HOH A 21 621 36 HOH HOH . 
G 6 HOH A 22 622 46 HOH HOH . 
G 6 HOH A 23 623 211 HOH HOH . 
G 6 HOH A 24 624 234 HOH HOH . 
G 6 HOH A 25 625 102 HOH HOH . 
G 6 HOH A 26 626 167 HOH HOH . 
G 6 HOH A 27 627 111 HOH HOH . 
G 6 HOH A 28 628 127 HOH HOH . 
G 6 HOH A 29 629 117 HOH HOH . 
G 6 HOH A 30 630 182 HOH HOH . 
G 6 HOH A 31 631 137 HOH HOH . 
G 6 HOH A 32 632 166 HOH HOH . 
G 6 HOH A 33 633 226 HOH HOH . 
G 6 HOH A 34 634 155 HOH HOH . 
G 6 HOH A 35 635 212 HOH HOH . 
G 6 HOH A 36 636 38 HOH HOH . 
G 6 HOH A 37 637 138 HOH HOH . 
G 6 HOH A 38 638 24 HOH HOH . 
G 6 HOH A 39 639 228 HOH HOH . 
G 6 HOH A 40 640 216 HOH HOH . 
G 6 HOH A 41 641 9 HOH HOH . 
G 6 HOH A 42 642 98 HOH HOH . 
G 6 HOH A 43 643 157 HOH HOH . 
G 6 HOH A 44 644 11 HOH HOH . 
G 6 HOH A 45 645 112 HOH HOH . 
G 6 HOH A 46 646 187 HOH HOH . 
G 6 HOH A 47 647 156 HOH HOH . 
G 6 HOH A 48 648 20 HOH HOH . 
G 6 HOH A 49 649 1 HOH HOH . 
G 6 HOH A 50 650 197 HOH HOH . 
G 6 HOH A 51 651 214 HOH HOH . 
G 6 HOH A 52 652 148 HOH HOH . 
G 6 HOH A 53 653 47 HOH HOH . 
G 6 HOH A 54 654 215 HOH HOH . 
G 6 HOH A 55 655 50 HOH HOH . 
G 6 HOH A 56 656 17 HOH HOH . 
G 6 HOH A 57 657 171 HOH HOH . 
G 6 HOH A 58 658 23 HOH HOH . 
G 6 HOH A 59 659 124 HOH HOH . 
G 6 HOH A 60 660 72 HOH HOH . 
G 6 HOH A 61 661 232 HOH HOH . 
G 6 HOH A 62 662 78 HOH HOH . 
G 6 HOH A 63 663 39 HOH HOH . 
G 6 HOH A 64 664 133 HOH HOH . 
G 6 HOH A 65 665 66 HOH HOH . 
G 6 HOH A 66 666 221 HOH HOH . 
G 6 HOH A 67 667 7 HOH HOH . 
G 6 HOH A 68 668 172 HOH HOH . 
G 6 HOH A 69 669 176 HOH HOH . 
G 6 HOH A 70 670 120 HOH HOH . 
G 6 HOH A 71 671 42 HOH HOH . 
G 6 HOH A 72 672 142 HOH HOH . 
G 6 HOH A 73 673 199 HOH HOH . 
G 6 HOH A 74 674 19 HOH HOH . 
G 6 HOH A 75 675 122 HOH HOH . 
G 6 HOH A 76 676 48 HOH HOH . 
G 6 HOH A 77 677 185 HOH HOH . 
G 6 HOH A 78 678 13 HOH HOH . 
G 6 HOH A 79 679 224 HOH HOH . 
G 6 HOH A 80 680 198 HOH HOH . 
G 6 HOH A 81 681 189 HOH HOH . 
G 6 HOH A 82 682 192 HOH HOH . 
G 6 HOH A 83 683 170 HOH HOH . 
G 6 HOH A 84 684 85 HOH HOH . 
G 6 HOH A 85 685 2 HOH HOH . 
G 6 HOH A 86 686 33 HOH HOH . 
G 6 HOH A 87 687 129 HOH HOH . 
G 6 HOH A 88 688 3 HOH HOH . 
G 6 HOH A 89 689 21 HOH HOH . 
G 6 HOH A 90 690 30 HOH HOH . 
G 6 HOH A 91 691 125 HOH HOH . 
G 6 HOH A 92 692 168 HOH HOH . 
G 6 HOH A 93 693 37 HOH HOH . 
G 6 HOH A 94 694 88 HOH HOH . 
G 6 HOH A 95 695 150 HOH HOH . 
G 6 HOH A 96 696 210 HOH HOH . 
G 6 HOH A 97 697 151 HOH HOH . 
G 6 HOH A 98 698 60 HOH HOH . 
G 6 HOH A 99 699 5 HOH HOH . 
G 6 HOH A 100 700 8 HOH HOH . 
G 6 HOH A 101 701 123 HOH HOH . 
G 6 HOH A 102 702 91 HOH HOH . 
G 6 HOH A 103 703 25 HOH HOH . 
G 6 HOH A 104 704 154 HOH HOH . 
G 6 HOH A 105 705 34 HOH HOH . 
G 6 HOH A 106 706 10 HOH HOH . 
G 6 HOH A 107 707 126 HOH HOH . 
G 6 HOH A 108 708 217 HOH HOH . 
G 6 HOH A 109 709 4 HOH HOH . 
G 6 HOH A 110 710 64 HOH HOH . 
G 6 HOH A 111 711 143 HOH HOH . 
G 6 HOH A 112 712 132 HOH HOH . 
G 6 HOH A 113 713 75 HOH HOH . 
G 6 HOH A 114 714 14 HOH HOH . 
G 6 HOH A 115 715 113 HOH HOH . 
G 6 HOH A 116 716 115 HOH HOH . 
G 6 HOH A 117 717 183 HOH HOH . 
G 6 HOH A 118 718 15 HOH HOH . 
G 6 HOH A 119 719 162 HOH HOH . 
G 6 HOH A 120 720 225 HOH HOH . 
G 6 HOH A 121 721 59 HOH HOH . 
G 6 HOH A 122 722 173 HOH HOH . 
G 6 HOH A 123 723 73 HOH HOH . 
G 6 HOH A 124 724 146 HOH HOH . 
G 6 HOH A 125 725 178 HOH HOH . 
G 6 HOH A 126 726 206 HOH HOH . 
G 6 HOH A 127 727 32 HOH HOH . 
G 6 HOH A 128 728 145 HOH HOH . 
G 6 HOH A 129 729 12 HOH HOH . 
G 6 HOH A 130 730 44 HOH HOH . 
G 6 HOH A 131 731 22 HOH HOH . 
G 6 HOH A 132 732 233 HOH HOH . 
G 6 HOH A 133 733 43 HOH HOH . 
G 6 HOH A 134 734 169 HOH HOH . 
G 6 HOH A 135 735 27 HOH HOH . 
G 6 HOH A 136 736 90 HOH HOH . 
G 6 HOH A 137 737 205 HOH HOH . 
G 6 HOH A 138 738 201 HOH HOH . 
G 6 HOH A 139 739 164 HOH HOH . 
G 6 HOH A 140 740 68 HOH HOH . 
G 6 HOH A 141 741 131 HOH HOH . 
G 6 HOH A 142 742 55 HOH HOH . 
G 6 HOH A 143 743 52 HOH HOH . 
G 6 HOH A 144 744 186 HOH HOH . 
G 6 HOH A 145 745 141 HOH HOH . 
G 6 HOH A 146 746 57 HOH HOH . 
G 6 HOH A 147 747 204 HOH HOH . 
G 6 HOH A 148 748 18 HOH HOH . 
G 6 HOH A 149 749 191 HOH HOH . 
G 6 HOH A 150 750 159 HOH HOH . 
G 6 HOH A 151 751 45 HOH HOH . 
G 6 HOH A 152 752 174 HOH HOH . 
G 6 HOH A 153 753 67 HOH HOH . 
G 6 HOH A 154 754 158 HOH HOH . 
G 6 HOH A 155 755 193 HOH HOH . 
G 6 HOH A 156 756 51 HOH HOH . 
G 6 HOH A 157 757 161 HOH HOH . 
G 6 HOH A 158 758 92 HOH HOH . 
G 6 HOH A 159 759 54 HOH HOH . 
G 6 HOH A 160 760 118 HOH HOH . 
G 6 HOH A 161 761 177 HOH HOH . 
G 6 HOH A 162 762 194 HOH HOH . 
G 6 HOH A 163 763 203 HOH HOH . 
G 6 HOH A 164 764 119 HOH HOH . 
G 6 HOH A 165 765 153 HOH HOH . 
G 6 HOH A 166 766 180 HOH HOH . 
G 6 HOH A 167 767 6 HOH HOH . 
G 6 HOH A 168 768 80 HOH HOH . 
G 6 HOH A 169 769 179 HOH HOH . 
G 6 HOH A 170 770 82 HOH HOH . 
G 6 HOH A 171 771 135 HOH HOH . 
G 6 HOH A 172 772 200 HOH HOH . 
G 6 HOH A 173 773 147 HOH HOH . 
G 6 HOH A 174 774 136 HOH HOH . 
G 6 HOH A 175 775 63 HOH HOH . 
G 6 HOH A 176 776 218 HOH HOH . 
G 6 HOH A 177 777 86 HOH HOH . 
G 6 HOH A 178 778 74 HOH HOH . 
G 6 HOH A 179 779 130 HOH HOH . 
G 6 HOH A 180 780 196 HOH HOH . 
G 6 HOH A 181 781 49 HOH HOH . 
G 6 HOH A 182 782 209 HOH HOH . 
G 6 HOH A 183 783 140 HOH HOH . 
G 6 HOH A 184 784 160 HOH HOH . 
G 6 HOH A 185 785 81 HOH HOH . 
G 6 HOH A 186 786 71 HOH HOH . 
G 6 HOH A 187 787 114 HOH HOH . 
G 6 HOH A 188 788 28 HOH HOH . 
G 6 HOH A 189 789 149 HOH HOH . 
G 6 HOH A 190 790 195 HOH HOH . 
G 6 HOH A 191 791 231 HOH HOH . 
G 6 HOH A 192 792 93 HOH HOH . 
G 6 HOH A 193 793 83 HOH HOH . 
G 6 HOH A 194 794 207 HOH HOH . 
G 6 HOH A 195 795 202 HOH HOH . 
G 6 HOH A 196 796 175 HOH HOH . 
G 6 HOH A 197 797 116 HOH HOH . 
G 6 HOH A 198 798 87 HOH HOH . 
G 6 HOH A 199 799 223 HOH HOH . 
G 6 HOH A 200 800 230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3PG . . . B 2 -9.173 -7.727 10.607 1 57.66 ? C1 3PG 501 A 1 
HETATM 2 O O1 3PG . . . B 2 -9.621 -8.047 9.471 1 54 ? O1 3PG 501 A 1 
HETATM 3 O O2 3PG . . . B 2 -8.302 -6.86 10.862 1 52.85 ? O2 3PG 501 A 1 
HETATM 4 C C2 3PG . . . B 2 -9.767 -8.464 11.753 1 56.09 ? C2 3PG 501 A 1 
HETATM 5 O O3 3PG . . . B 2 -10.784 -7.621 12.328 1 57.22 ? O3 3PG 501 A 1 
HETATM 6 C C3 3PG . . . B 2 -8.788 -8.936 12.852 1 54.97 ? C3 3PG 501 A 1 
HETATM 7 O O1P 3PG . . . B 2 -7.515 -9.404 12.373 1 46.34 ? O1P 3PG 501 A 1 
HETATM 8 P P 3PG . . . B 2 -6.239 -9.554 13.388 1 42.5 ? P 3PG 501 A 1 
HETATM 9 O O2P 3PG . . . B 2 -4.963 -9.662 12.574 1 41.56 ? O2P 3PG 501 A 1 
HETATM 10 O O3P 3PG . . . B 2 -6.199 -8.28 14.217 1 40.86 ? O3P 3PG 501 A 1 
HETATM 11 O O4P 3PG . . . B 2 -6.661 -10.79 14.151 1 40.47 ? O4P 3PG 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#