data_5M72
#
_model_server_result.job_id            856Zayb9hLGzGOJfAVO5Yg 
_model_server_result.datetime_utc      '2024-11-24 13:01:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":204}' 
#
_entry.id    5M72 
#
_exptl.entry_id    5M72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.22 
_cell.angle_gamma         90 
_cell.entry_id            5M72 
_cell.length_a            66.597 
_cell.length_b            52.269 
_cell.length_c            62.863 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLN 49 A GLN 57 1_555 E K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc2 A O GLN 49 A GLN 57 1_555 E K K . A K 203 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc3 A OD1 ASN 50 A ASN 58 1_555 E K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc4 A OD1 ASN 50 A ASN 58 1_555 E K K . A K 203 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc5 E K K . A K 203 1_555 H O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc6 E K K . A K 203 1_555 H O HOH . A HOH 340 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc7 E K K . A K 203 1_555 H O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.492 ? 
metalc ? metalc8 E K K . A K 203 1_555 H O HOH . A HOH 369 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 3.492 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5M72 
_atom_sites.fract_transf_matrix[1][1]    0.015016 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008056 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019132 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018053 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 201 1 SO4 SO4 . 
D 3 SO4 A 1 202 2 SO4 SO4 . 
E 4 K A 1 203 1 K K . 
F 5 GOL A 1 204 1 GOL GOL . 
G 5 GOL A 1 205 2 GOL GOL . 
H 6 HOH A 1 301 147 HOH HOH . 
H 6 HOH A 2 302 48 HOH HOH . 
H 6 HOH A 3 303 28 HOH HOH . 
H 6 HOH A 4 304 46 HOH HOH . 
H 6 HOH A 5 305 10 HOH HOH . 
H 6 HOH A 6 306 142 HOH HOH . 
H 6 HOH A 7 307 82 HOH HOH . 
H 6 HOH A 8 308 32 HOH HOH . 
H 6 HOH A 9 309 2 HOH HOH . 
H 6 HOH A 10 310 121 HOH HOH . 
H 6 HOH A 11 311 83 HOH HOH . 
H 6 HOH A 12 312 129 HOH HOH . 
H 6 HOH A 13 313 116 HOH HOH . 
H 6 HOH A 14 314 132 HOH HOH . 
H 6 HOH A 15 315 112 HOH HOH . 
H 6 HOH A 16 316 119 HOH HOH . 
H 6 HOH A 17 317 25 HOH HOH . 
H 6 HOH A 18 318 113 HOH HOH . 
H 6 HOH A 19 319 99 HOH HOH . 
H 6 HOH A 20 320 17 HOH HOH . 
H 6 HOH A 21 321 49 HOH HOH . 
H 6 HOH A 22 322 105 HOH HOH . 
H 6 HOH A 23 323 114 HOH HOH . 
H 6 HOH A 24 324 72 HOH HOH . 
H 6 HOH A 25 325 87 HOH HOH . 
H 6 HOH A 26 326 9 HOH HOH . 
H 6 HOH A 27 327 8 HOH HOH . 
H 6 HOH A 28 328 74 HOH HOH . 
H 6 HOH A 29 329 1 HOH HOH . 
H 6 HOH A 30 330 13 HOH HOH . 
H 6 HOH A 31 331 106 HOH HOH . 
H 6 HOH A 32 332 51 HOH HOH . 
H 6 HOH A 33 333 20 HOH HOH . 
H 6 HOH A 34 334 134 HOH HOH . 
H 6 HOH A 35 335 29 HOH HOH . 
H 6 HOH A 36 336 15 HOH HOH . 
H 6 HOH A 37 337 26 HOH HOH . 
H 6 HOH A 38 338 109 HOH HOH . 
H 6 HOH A 39 339 31 HOH HOH . 
H 6 HOH A 40 340 4 HOH HOH . 
H 6 HOH A 41 341 144 HOH HOH . 
H 6 HOH A 42 342 91 HOH HOH . 
H 6 HOH A 43 343 30 HOH HOH . 
H 6 HOH A 44 344 6 HOH HOH . 
H 6 HOH A 45 345 101 HOH HOH . 
H 6 HOH A 46 346 62 HOH HOH . 
H 6 HOH A 47 347 27 HOH HOH . 
H 6 HOH A 48 348 145 HOH HOH . 
H 6 HOH A 49 349 90 HOH HOH . 
H 6 HOH A 50 350 22 HOH HOH . 
H 6 HOH A 51 351 138 HOH HOH . 
H 6 HOH A 52 352 66 HOH HOH . 
H 6 HOH A 53 353 58 HOH HOH . 
H 6 HOH A 54 354 85 HOH HOH . 
H 6 HOH A 55 355 24 HOH HOH . 
H 6 HOH A 56 356 96 HOH HOH . 
H 6 HOH A 57 357 36 HOH HOH . 
H 6 HOH A 58 358 50 HOH HOH . 
H 6 HOH A 59 359 88 HOH HOH . 
H 6 HOH A 60 360 70 HOH HOH . 
H 6 HOH A 61 361 71 HOH HOH . 
H 6 HOH A 62 362 21 HOH HOH . 
H 6 HOH A 63 363 111 HOH HOH . 
H 6 HOH A 64 364 68 HOH HOH . 
H 6 HOH A 65 365 45 HOH HOH . 
H 6 HOH A 66 366 18 HOH HOH . 
H 6 HOH A 67 367 137 HOH HOH . 
H 6 HOH A 68 368 14 HOH HOH . 
H 6 HOH A 69 369 5 HOH HOH . 
H 6 HOH A 70 370 100 HOH HOH . 
H 6 HOH A 71 371 3 HOH HOH . 
H 6 HOH A 72 372 130 HOH HOH . 
H 6 HOH A 73 373 44 HOH HOH . 
H 6 HOH A 74 374 120 HOH HOH . 
H 6 HOH A 75 375 84 HOH HOH . 
H 6 HOH A 76 376 37 HOH HOH . 
H 6 HOH A 77 377 23 HOH HOH . 
H 6 HOH A 78 378 148 HOH HOH . 
H 6 HOH A 79 379 110 HOH HOH . 
H 6 HOH A 80 380 40 HOH HOH . 
H 6 HOH A 81 381 11 HOH HOH . 
H 6 HOH A 82 382 104 HOH HOH . 
H 6 HOH A 83 383 86 HOH HOH . 
H 6 HOH A 84 384 98 HOH HOH . 
H 6 HOH A 85 385 7 HOH HOH . 
H 6 HOH A 86 386 38 HOH HOH . 
H 6 HOH A 87 387 94 HOH HOH . 
H 6 HOH A 88 388 47 HOH HOH . 
H 6 HOH A 89 389 54 HOH HOH . 
H 6 HOH A 90 390 41 HOH HOH . 
H 6 HOH A 91 391 57 HOH HOH . 
H 6 HOH A 92 392 139 HOH HOH . 
H 6 HOH A 93 393 103 HOH HOH . 
H 6 HOH A 94 394 59 HOH HOH . 
H 6 HOH A 95 395 89 HOH HOH . 
H 6 HOH A 96 396 63 HOH HOH . 
H 6 HOH A 97 397 107 HOH HOH . 
H 6 HOH A 98 398 125 HOH HOH . 
H 6 HOH A 99 399 75 HOH HOH . 
H 6 HOH A 100 400 33 HOH HOH . 
H 6 HOH A 101 401 133 HOH HOH . 
H 6 HOH A 102 402 95 HOH HOH . 
H 6 HOH A 103 403 123 HOH HOH . 
H 6 HOH A 104 404 135 HOH HOH . 
H 6 HOH A 105 405 61 HOH HOH . 
H 6 HOH A 106 406 108 HOH HOH . 
H 6 HOH A 107 407 140 HOH HOH . 
H 6 HOH A 108 408 43 HOH HOH . 
H 6 HOH A 109 409 76 HOH HOH . 
H 6 HOH A 110 410 118 HOH HOH . 
H 6 HOH A 111 411 69 HOH HOH . 
H 6 HOH A 112 412 143 HOH HOH . 
H 6 HOH A 113 413 64 HOH HOH . 
H 6 HOH A 114 414 97 HOH HOH . 
H 6 HOH A 115 415 56 HOH HOH . 
H 6 HOH A 116 416 80 HOH HOH . 
H 6 HOH A 117 417 126 HOH HOH . 
H 6 HOH A 118 418 131 HOH HOH . 
H 6 HOH A 119 419 115 HOH HOH . 
H 6 HOH A 120 420 39 HOH HOH . 
H 6 HOH A 121 421 136 HOH HOH . 
H 6 HOH A 122 422 150 HOH HOH . 
H 6 HOH A 123 423 67 HOH HOH . 
H 6 HOH A 124 424 42 HOH HOH . 
H 6 HOH A 125 425 79 HOH HOH . 
H 6 HOH A 126 426 73 HOH HOH . 
H 6 HOH A 127 427 124 HOH HOH . 
I 6 HOH B 1 701 102 HOH HOH . 
I 6 HOH B 2 702 60 HOH HOH . 
I 6 HOH B 3 703 35 HOH HOH . 
I 6 HOH B 4 704 93 HOH HOH . 
I 6 HOH B 5 705 146 HOH HOH . 
I 6 HOH B 6 706 81 HOH HOH . 
I 6 HOH B 7 707 16 HOH HOH . 
I 6 HOH B 8 708 128 HOH HOH . 
I 6 HOH B 9 709 117 HOH HOH . 
I 6 HOH B 10 710 12 HOH HOH . 
I 6 HOH B 11 711 77 HOH HOH . 
I 6 HOH B 12 712 34 HOH HOH . 
I 6 HOH B 13 713 92 HOH HOH . 
I 6 HOH B 14 714 19 HOH HOH . 
I 6 HOH B 15 715 149 HOH HOH . 
I 6 HOH B 16 716 127 HOH HOH . 
I 6 HOH B 17 717 78 HOH HOH . 
I 6 HOH B 18 718 53 HOH HOH . 
I 6 HOH B 19 719 65 HOH HOH . 
I 6 HOH B 20 720 52 HOH HOH . 
I 6 HOH B 21 721 55 HOH HOH . 
I 6 HOH B 22 722 141 HOH HOH . 
I 6 HOH B 23 723 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 9.659 19.364 42.165 1 82.75 ? C1 GOL 204 A 1 
HETATM 2 O O1 GOL . . . F 5 8.275 19.249 42.399 1 83.95 ? O1 GOL 204 A 1 
HETATM 3 C C2 GOL . . . F 5 9.883 20.087 40.845 1 81.41 ? C2 GOL 204 A 1 
HETATM 4 O O2 GOL . . . F 5 8.792 20.924 40.56 1 82.84 ? O2 GOL 204 A 1 
HETATM 5 C C3 GOL . . . F 5 11.152 20.916 40.928 1 77.44 ? C3 GOL 204 A 1 
HETATM 6 O O3 GOL . . . F 5 12.093 20.219 41.71 1 77.12 ? O3 GOL 204 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#