data_5M78 # _model_server_result.job_id xL-2Wb0v1lTcuaf3gUmN7g _model_server_result.datetime_utc '2024-11-06 04:41:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5M78 # _exptl.entry_id 5M78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.75 _cell.angle_gamma 90 _cell.entry_id 5M78 _cell.length_a 42.439 _cell.length_b 41.423 _cell.length_c 72.243 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 94 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A NE2 HIS 101 A HIS 96 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A ND1 HIS 124 A HIS 119 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 A O GLN 141 A GLN 137 1_555 D HG MBO . A MBO 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.978 ? metalc ? metalc5 A O GLU 209 A GLU 205 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.144 ? metalc ? metalc6 A SG CYS 210 A CYS 206 1_555 D HG MBO . A MBO 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.94 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 D HG MBO . A MBO 303 1_555 F O HOH . A HOH 500 1_555 ? A ? ? A ? ? ? ? ? ? ? 3.024 ? # _chem_comp.formula 'C7 H6 O3' _chem_comp.formula_weight 138.121 _chem_comp.id SAL _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'SALICYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' O1' SAL doub 301 n n C1' O2' SAL sing 302 n n C1' C1 SAL sing 303 n n O2' HO2' SAL sing 304 n n C1 C2 SAL sing 305 n y C1 C6 SAL doub 306 n y C2 C3 SAL doub 307 n y C2 O2 SAL sing 308 n n C3 C4 SAL sing 309 n y C3 H3 SAL sing 310 n n C4 C5 SAL doub 311 n y C4 H4 SAL sing 312 n n C5 C6 SAL sing 313 n y C5 H5 SAL sing 314 n n C6 H6 SAL sing 315 n n O2 HO2 SAL sing 316 n n # _atom_sites.entry_id 5M78 _atom_sites.fract_transf_matrix[1][1] 0.023563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 3 ZN A 1 302 1 ZN ZN2 . D 4 MBO A 1 303 1 MBO BE7 . E 5 SAL A 1 304 1 SAL J15 . F 6 HOH A 1 401 164 HOH HOH . F 6 HOH A 2 402 257 HOH HOH . F 6 HOH A 3 403 316 HOH HOH . F 6 HOH A 4 404 230 HOH HOH . F 6 HOH A 5 405 103 HOH HOH . F 6 HOH A 6 406 244 HOH HOH . F 6 HOH A 7 407 71 HOH HOH . F 6 HOH A 8 408 281 HOH HOH . F 6 HOH A 9 409 38 HOH HOH . F 6 HOH A 10 410 107 HOH HOH . F 6 HOH A 11 411 27 HOH HOH . F 6 HOH A 12 412 44 HOH HOH . F 6 HOH A 13 413 29 HOH HOH . F 6 HOH A 14 414 210 HOH HOH . F 6 HOH A 15 415 138 HOH HOH . F 6 HOH A 16 416 264 HOH HOH . F 6 HOH A 17 417 17 HOH HOH . F 6 HOH A 18 418 63 HOH HOH . F 6 HOH A 19 419 249 HOH HOH . F 6 HOH A 20 420 194 HOH HOH . F 6 HOH A 21 421 246 HOH HOH . F 6 HOH A 22 422 24 HOH HOH . F 6 HOH A 23 423 137 HOH HOH . F 6 HOH A 24 424 226 HOH HOH . F 6 HOH A 25 425 59 HOH HOH . F 6 HOH A 26 426 89 HOH HOH . F 6 HOH A 27 427 163 HOH HOH . F 6 HOH A 28 428 223 HOH HOH . F 6 HOH A 29 429 19 HOH HOH . F 6 HOH A 30 430 183 HOH HOH . F 6 HOH A 31 431 96 HOH HOH . F 6 HOH A 32 432 179 HOH HOH . F 6 HOH A 33 433 160 HOH HOH . F 6 HOH A 34 434 161 HOH HOH . F 6 HOH A 35 435 1 HOH HOH . F 6 HOH A 36 436 90 HOH HOH . F 6 HOH A 37 437 296 HOH HOH . F 6 HOH A 38 438 10 HOH HOH . F 6 HOH A 39 439 37 HOH HOH . F 6 HOH A 40 440 28 HOH HOH . F 6 HOH A 41 441 3 HOH HOH . F 6 HOH A 42 442 13 HOH HOH . F 6 HOH A 43 443 92 HOH HOH . F 6 HOH A 44 444 162 HOH HOH . F 6 HOH A 45 445 34 HOH HOH . F 6 HOH A 46 446 180 HOH HOH . F 6 HOH A 47 447 43 HOH HOH . F 6 HOH A 48 448 108 HOH HOH . F 6 HOH A 49 449 146 HOH HOH . F 6 HOH A 50 450 154 HOH HOH . F 6 HOH A 51 451 172 HOH HOH . F 6 HOH A 52 452 16 HOH HOH . F 6 HOH A 53 453 35 HOH HOH . F 6 HOH A 54 454 83 HOH HOH . F 6 HOH A 55 455 242 HOH HOH . F 6 HOH A 56 456 218 HOH HOH . F 6 HOH A 57 457 12 HOH HOH . F 6 HOH A 58 458 133 HOH HOH . F 6 HOH A 59 459 188 HOH HOH . F 6 HOH A 60 460 178 HOH HOH . F 6 HOH A 61 461 144 HOH HOH . F 6 HOH A 62 462 168 HOH HOH . F 6 HOH A 63 463 9 HOH HOH . F 6 HOH A 64 464 140 HOH HOH . F 6 HOH A 65 465 241 HOH HOH . F 6 HOH A 66 466 228 HOH HOH . F 6 HOH A 67 467 79 HOH HOH . F 6 HOH A 68 468 40 HOH HOH . F 6 HOH A 69 469 209 HOH HOH . F 6 HOH A 70 470 201 HOH HOH . F 6 HOH A 71 471 136 HOH HOH . F 6 HOH A 72 472 139 HOH HOH . F 6 HOH A 73 473 157 HOH HOH . F 6 HOH A 74 474 91 HOH HOH . F 6 HOH A 75 475 145 HOH HOH . F 6 HOH A 76 476 314 HOH HOH . F 6 HOH A 77 477 149 HOH HOH . F 6 HOH A 78 478 23 HOH HOH . F 6 HOH A 79 479 45 HOH HOH . F 6 HOH A 80 480 77 HOH HOH . F 6 HOH A 81 481 26 HOH HOH . F 6 HOH A 82 482 142 HOH HOH . F 6 HOH A 83 483 14 HOH HOH . F 6 HOH A 84 484 205 HOH HOH . F 6 HOH A 85 485 56 HOH HOH . F 6 HOH A 86 486 202 HOH HOH . F 6 HOH A 87 487 8 HOH HOH . F 6 HOH A 88 488 165 HOH HOH . F 6 HOH A 89 489 186 HOH HOH . F 6 HOH A 90 490 173 HOH HOH . F 6 HOH A 91 491 219 HOH HOH . F 6 HOH A 92 492 291 HOH HOH . F 6 HOH A 93 493 147 HOH HOH . F 6 HOH A 94 494 229 HOH HOH . F 6 HOH A 95 495 80 HOH HOH . F 6 HOH A 96 496 151 HOH HOH . F 6 HOH A 97 497 148 HOH HOH . F 6 HOH A 98 498 47 HOH HOH . F 6 HOH A 99 499 315 HOH HOH . F 6 HOH A 100 500 51 HOH HOH . F 6 HOH A 101 501 176 HOH HOH . F 6 HOH A 102 502 261 HOH HOH . F 6 HOH A 103 503 66 HOH HOH . F 6 HOH A 104 504 169 HOH HOH . F 6 HOH A 105 505 220 HOH HOH . F 6 HOH A 106 506 33 HOH HOH . F 6 HOH A 107 507 46 HOH HOH . F 6 HOH A 108 508 143 HOH HOH . F 6 HOH A 109 509 211 HOH HOH . F 6 HOH A 110 510 259 HOH HOH . F 6 HOH A 111 511 206 HOH HOH . F 6 HOH A 112 512 4 HOH HOH . F 6 HOH A 113 513 292 HOH HOH . F 6 HOH A 114 514 76 HOH HOH . F 6 HOH A 115 515 170 HOH HOH . F 6 HOH A 116 516 184 HOH HOH . F 6 HOH A 117 517 5 HOH HOH . F 6 HOH A 118 518 32 HOH HOH . F 6 HOH A 119 519 30 HOH HOH . F 6 HOH A 120 520 247 HOH HOH . F 6 HOH A 121 521 268 HOH HOH . F 6 HOH A 122 522 42 HOH HOH . F 6 HOH A 123 523 175 HOH HOH . F 6 HOH A 124 524 213 HOH HOH . F 6 HOH A 125 525 155 HOH HOH . F 6 HOH A 126 526 231 HOH HOH . F 6 HOH A 127 527 15 HOH HOH . F 6 HOH A 128 528 199 HOH HOH . F 6 HOH A 129 529 150 HOH HOH . F 6 HOH A 130 530 6 HOH HOH . F 6 HOH A 131 531 48 HOH HOH . F 6 HOH A 132 532 82 HOH HOH . F 6 HOH A 133 533 20 HOH HOH . F 6 HOH A 134 534 166 HOH HOH . F 6 HOH A 135 535 192 HOH HOH . F 6 HOH A 136 536 25 HOH HOH . F 6 HOH A 137 537 282 HOH HOH . F 6 HOH A 138 538 21 HOH HOH . F 6 HOH A 139 539 189 HOH HOH . F 6 HOH A 140 540 101 HOH HOH . F 6 HOH A 141 541 216 HOH HOH . F 6 HOH A 142 542 227 HOH HOH . F 6 HOH A 143 543 248 HOH HOH . F 6 HOH A 144 544 311 HOH HOH . F 6 HOH A 145 545 116 HOH HOH . F 6 HOH A 146 546 274 HOH HOH . F 6 HOH A 147 547 196 HOH HOH . F 6 HOH A 148 548 302 HOH HOH . F 6 HOH A 149 549 55 HOH HOH . F 6 HOH A 150 550 7 HOH HOH . F 6 HOH A 151 551 266 HOH HOH . F 6 HOH A 152 552 224 HOH HOH . F 6 HOH A 153 553 181 HOH HOH . F 6 HOH A 154 554 99 HOH HOH . F 6 HOH A 155 555 207 HOH HOH . F 6 HOH A 156 556 215 HOH HOH . F 6 HOH A 157 557 174 HOH HOH . F 6 HOH A 158 558 269 HOH HOH . F 6 HOH A 159 559 152 HOH HOH . F 6 HOH A 160 560 323 HOH HOH . F 6 HOH A 161 561 52 HOH HOH . F 6 HOH A 162 562 57 HOH HOH . F 6 HOH A 163 563 225 HOH HOH . F 6 HOH A 164 564 64 HOH HOH . F 6 HOH A 165 565 141 HOH HOH . F 6 HOH A 166 566 238 HOH HOH . F 6 HOH A 167 567 2 HOH HOH . F 6 HOH A 168 568 58 HOH HOH . F 6 HOH A 169 569 318 HOH HOH . F 6 HOH A 170 570 86 HOH HOH . F 6 HOH A 171 571 185 HOH HOH . F 6 HOH A 172 572 191 HOH HOH . F 6 HOH A 173 573 31 HOH HOH . F 6 HOH A 174 574 222 HOH HOH . F 6 HOH A 175 575 167 HOH HOH . F 6 HOH A 176 576 73 HOH HOH . F 6 HOH A 177 577 67 HOH HOH . F 6 HOH A 178 578 187 HOH HOH . F 6 HOH A 179 579 50 HOH HOH . F 6 HOH A 180 580 212 HOH HOH . F 6 HOH A 181 581 39 HOH HOH . F 6 HOH A 182 582 299 HOH HOH . F 6 HOH A 183 583 190 HOH HOH . F 6 HOH A 184 584 193 HOH HOH . F 6 HOH A 185 585 251 HOH HOH . F 6 HOH A 186 586 69 HOH HOH . F 6 HOH A 187 587 250 HOH HOH . F 6 HOH A 188 588 60 HOH HOH . F 6 HOH A 189 589 286 HOH HOH . F 6 HOH A 190 590 312 HOH HOH . F 6 HOH A 191 591 158 HOH HOH . F 6 HOH A 192 592 321 HOH HOH . F 6 HOH A 193 593 256 HOH HOH . F 6 HOH A 194 594 153 HOH HOH . F 6 HOH A 195 595 62 HOH HOH . F 6 HOH A 196 596 36 HOH HOH . F 6 HOH A 197 597 263 HOH HOH . F 6 HOH A 198 598 297 HOH HOH . F 6 HOH A 199 599 171 HOH HOH . F 6 HOH A 200 600 290 HOH HOH . F 6 HOH A 201 601 304 HOH HOH . F 6 HOH A 202 602 214 HOH HOH . F 6 HOH A 203 603 283 HOH HOH . F 6 HOH A 204 604 217 HOH HOH . F 6 HOH A 205 605 114 HOH HOH . F 6 HOH A 206 606 252 HOH HOH . F 6 HOH A 207 607 289 HOH HOH . F 6 HOH A 208 608 195 HOH HOH . F 6 HOH A 209 609 204 HOH HOH . F 6 HOH A 210 610 200 HOH HOH . F 6 HOH A 211 611 18 HOH HOH . F 6 HOH A 212 612 232 HOH HOH . F 6 HOH A 213 613 49 HOH HOH . F 6 HOH A 214 614 61 HOH HOH . F 6 HOH A 215 615 276 HOH HOH . F 6 HOH A 216 616 278 HOH HOH . F 6 HOH A 217 617 156 HOH HOH . F 6 HOH A 218 618 245 HOH HOH . F 6 HOH A 219 619 159 HOH HOH . F 6 HOH A 220 620 78 HOH HOH . F 6 HOH A 221 621 41 HOH HOH . F 6 HOH A 222 622 280 HOH HOH . F 6 HOH A 223 623 70 HOH HOH . F 6 HOH A 224 624 239 HOH HOH . F 6 HOH A 225 625 118 HOH HOH . F 6 HOH A 226 626 119 HOH HOH . F 6 HOH A 227 627 88 HOH HOH . F 6 HOH A 228 628 115 HOH HOH . F 6 HOH A 229 629 243 HOH HOH . F 6 HOH A 230 630 182 HOH HOH . F 6 HOH A 231 631 106 HOH HOH . F 6 HOH A 232 632 208 HOH HOH . F 6 HOH A 233 633 122 HOH HOH . F 6 HOH A 234 634 203 HOH HOH . F 6 HOH A 235 635 309 HOH HOH . F 6 HOH A 236 636 303 HOH HOH . F 6 HOH A 237 637 275 HOH HOH . F 6 HOH A 238 638 305 HOH HOH . F 6 HOH A 239 639 117 HOH HOH . F 6 HOH A 240 640 121 HOH HOH . F 6 HOH A 241 641 120 HOH HOH . F 6 HOH A 242 642 130 HOH HOH . F 6 HOH A 243 643 126 HOH HOH . F 6 HOH A 244 644 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' SAL . . . E 5 -1.7 3.305 85.52 0.8 16.6 ? C1' SAL 304 A 1 HETATM 2 O O1' SAL . . . E 5 -2.975 3.128 85.737 0.8 17.47 ? O1' SAL 304 A 1 HETATM 3 O O2' SAL . . . E 5 -0.838 2.522 85.916 0.8 16.16 ? O2' SAL 304 A 1 HETATM 4 C C1 SAL . . . E 5 -1.352 4.556 84.777 0.8 16.25 ? C1 SAL 304 A 1 HETATM 5 C C2 SAL . . . E 5 -2.373 5.452 84.395 0.8 17.25 ? C2 SAL 304 A 1 HETATM 6 C C3 SAL . . . E 5 -2.037 6.633 83.74 0.8 16.89 ? C3 SAL 304 A 1 HETATM 7 C C4 SAL . . . E 5 -0.717 6.93 83.465 0.8 17.28 ? C4 SAL 304 A 1 HETATM 8 C C5 SAL . . . E 5 0.28 6.054 83.828 0.8 17.01 ? C5 SAL 304 A 1 HETATM 9 C C6 SAL . . . E 5 -0.03 4.875 84.483 0.8 16.72 ? C6 SAL 304 A 1 HETATM 10 O O2 SAL . . . E 5 -3.676 5.196 84.662 0.8 18.74 ? O2 SAL 304 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #