data_5M7F
#
_model_server_result.job_id            RHGmoKzltSSEZWqx6gdFpw 
_model_server_result.datetime_utc      '2024-11-05 19:49:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m7f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":404}' 
#
_entry.id    5M7F 
#
_exptl.entry_id    5M7F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.7 
_cell.angle_gamma         90 
_cell.entry_id            5M7F 
_cell.length_a            70.42 
_cell.length_b            80.95 
_cell.length_c            76.22 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M7F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 265 A CYS 261 1_555 C CHA DPM . A DPM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? 
covale ? covale2 B SG CYS 265 B CYS 261 1_555 G CHA DPM . B DPM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 345 n n 
S O2 SO4 doub 346 n n 
S O3 SO4 sing 347 n n 
S O4 SO4 sing 348 n n 
#
_atom_sites.entry_id                     5M7F 
_atom_sites.fract_transf_matrix[1][1]    0.014201 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001417 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DPM A 1 401 500 DPM DPM . 
D 3 SO4 A 1 402 511 SO4 SO4 . 
E 3 SO4 A 1 403 512 SO4 SO4 . 
F 3 SO4 A 1 404 514 SO4 SO4 . 
G 2 DPM B 1 401 500 DPM DPM . 
H 3 SO4 B 1 402 511 SO4 SO4 . 
I 3 SO4 B 1 403 512 SO4 SO4 . 
J 3 SO4 B 1 404 514 SO4 SO4 . 
K 4 HOH A 1 501 826 HOH HOH . 
K 4 HOH A 2 502 824 HOH HOH . 
K 4 HOH A 3 503 802 HOH HOH . 
K 4 HOH A 4 504 825 HOH HOH . 
K 4 HOH A 5 505 831 HOH HOH . 
K 4 HOH A 6 506 812 HOH HOH . 
K 4 HOH A 7 507 820 HOH HOH . 
K 4 HOH A 8 508 827 HOH HOH . 
K 4 HOH A 9 509 805 HOH HOH . 
K 4 HOH A 10 510 814 HOH HOH . 
K 4 HOH A 11 511 829 HOH HOH . 
K 4 HOH A 12 512 828 HOH HOH . 
K 4 HOH A 13 513 810 HOH HOH . 
K 4 HOH A 14 514 816 HOH HOH . 
K 4 HOH A 15 515 809 HOH HOH . 
K 4 HOH A 16 516 804 HOH HOH . 
K 4 HOH A 17 517 818 HOH HOH . 
K 4 HOH A 18 518 801 HOH HOH . 
K 4 HOH A 19 519 817 HOH HOH . 
K 4 HOH A 20 520 806 HOH HOH . 
K 4 HOH A 21 521 832 HOH HOH . 
K 4 HOH A 22 522 811 HOH HOH . 
K 4 HOH A 23 523 803 HOH HOH . 
K 4 HOH A 24 524 819 HOH HOH . 
K 4 HOH A 25 525 807 HOH HOH . 
K 4 HOH A 26 526 815 HOH HOH . 
K 4 HOH A 27 527 823 HOH HOH . 
K 4 HOH A 28 528 821 HOH HOH . 
K 4 HOH A 29 529 808 HOH HOH . 
K 4 HOH A 30 530 822 HOH HOH . 
K 4 HOH A 31 531 813 HOH HOH . 
K 4 HOH A 32 532 830 HOH HOH . 
L 4 HOH B 1 501 835 HOH HOH . 
L 4 HOH B 2 502 802 HOH HOH . 
L 4 HOH B 3 503 805 HOH HOH . 
L 4 HOH B 4 504 836 HOH HOH . 
L 4 HOH B 5 505 840 HOH HOH . 
L 4 HOH B 6 506 807 HOH HOH . 
L 4 HOH B 7 507 804 HOH HOH . 
L 4 HOH B 8 508 806 HOH HOH . 
L 4 HOH B 9 509 803 HOH HOH . 
L 4 HOH B 10 510 838 HOH HOH . 
L 4 HOH B 11 511 842 HOH HOH . 
L 4 HOH B 12 512 837 HOH HOH . 
L 4 HOH B 13 513 839 HOH HOH . 
L 4 HOH B 14 514 808 HOH HOH . 
L 4 HOH B 15 515 801 HOH HOH . 
L 4 HOH B 16 516 834 HOH HOH . 
L 4 HOH B 17 517 809 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . J 3 -3.632 24.168 -1.201 1 96.01 ? S SO4 404 B 1 
HETATM 2 O O1 SO4 . . . J 3 -3.309 24.775 -2.504 1 95.23 ? O1 SO4 404 B 1 
HETATM 3 O O2 SO4 . . . J 3 -4.601 23.073 -1.392 1 93.67 ? O2 SO4 404 B 1 
HETATM 4 O O3 SO4 . . . J 3 -2.381 23.66 -0.64 1 98.82 ? O3 SO4 404 B 1 
HETATM 5 O O4 SO4 . . . J 3 -4.198 25.154 -0.263 1 94.82 ? O4 SO4 404 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#