data_5M7K # _model_server_result.job_id HcfgMDdcfF_9BlP5ekAhoQ _model_server_result.datetime_utc '2024-11-08 13:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":405}' # _entry.id 5M7K # _exptl.entry_id 5M7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7K _cell.length_a 57.9 _cell.length_b 84.8 _cell.length_c 384.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C FME 1 D FME 1 1_555 D N TYR 2 D TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 111 A HIS 91 1_555 E FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A NE2 HIS 144 A HIS 124 1_555 H FE HEC . A HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A NE2 HIS 156 A HIS 136 1_555 F FE HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc4 A NE2 HIS 268 A HIS 248 1_555 G FE HEC . A HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc5 A NE2 HIS 329 A HIS 309 1_555 H FE HEC . A HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 B NE2 HIS 191 B HIS 190 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc7 B NE2 HIS 231 B HIS 230 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 C NE2 HIS 218 C HIS 217 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc9 C OE1 GLU 233 C GLU 232 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc10 C OE2 GLU 233 C GLU 232 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc11 C NE2 HIS 265 C HIS 264 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 375 n n CA1 OA1 DGA doub 376 n n CA1 OG1 DGA sing 377 n n CA2 CA3 DGA sing 378 n n CA2 HA21 DGA sing 379 n n CA2 HA22 DGA sing 380 n n CA3 CA4 DGA sing 381 n n CA3 HA31 DGA sing 382 n n CA3 HA32 DGA sing 383 n n CA4 CA5 DGA sing 384 n n CA4 HA41 DGA sing 385 n n CA4 HA42 DGA sing 386 n n CA5 CA6 DGA sing 387 n n CA5 HA51 DGA sing 388 n n CA5 HA52 DGA sing 389 n n CA6 CA7 DGA sing 390 n n CA6 HA61 DGA sing 391 n n CA6 HA62 DGA sing 392 n n CA7 CA8 DGA sing 393 n n CA7 HA71 DGA sing 394 n n CA7 HA72 DGA sing 395 n n CA8 CA9 DGA sing 396 n n CA8 HA81 DGA sing 397 n n CA8 HA82 DGA sing 398 n n CA9 CAA DGA sing 399 n n CA9 HA91 DGA sing 400 n n CA9 HA92 DGA sing 401 n n CAA CBA DGA sing 402 n n CAA HAT1 DGA sing 403 n n CAA HAT2 DGA sing 404 n n CBA CCA DGA sing 405 n n CBA HAE1 DGA sing 406 n n CBA HAE2 DGA sing 407 n n CCA CDA DGA sing 408 n n CCA HAW1 DGA sing 409 n n CCA HAW2 DGA sing 410 n n CDA CEA DGA sing 411 n n CDA HAH1 DGA sing 412 n n CDA HAH2 DGA sing 413 n n CEA CFA DGA sing 414 n n CEA HAF1 DGA sing 415 n n CEA HAF2 DGA sing 416 n n CFA CGA DGA sing 417 n n CFA HAN1 DGA sing 418 n n CFA HAN2 DGA sing 419 n n CGA CHA DGA sing 420 n n CGA HAS1 DGA sing 421 n n CGA HAS2 DGA sing 422 n n CHA CIA DGA sing 423 n n CHA HAV1 DGA sing 424 n n CHA HAV2 DGA sing 425 n n CIA HAG1 DGA sing 426 n n CIA HAG2 DGA sing 427 n n CIA HAG3 DGA sing 428 n n CB1 CB2 DGA sing 429 n n CB1 OB1 DGA doub 430 n n CB1 OG2 DGA sing 431 n n CB2 CB3 DGA sing 432 n n CB2 HB21 DGA sing 433 n n CB2 HB22 DGA sing 434 n n CB3 CB4 DGA sing 435 n n CB3 HB31 DGA sing 436 n n CB3 HB32 DGA sing 437 n n CB4 CB5 DGA sing 438 n n CB4 HB41 DGA sing 439 n n CB4 HB42 DGA sing 440 n n CB5 CB6 DGA sing 441 n n CB5 HB51 DGA sing 442 n n CB5 HB52 DGA sing 443 n n CB6 CB7 DGA sing 444 n n CB6 HB61 DGA sing 445 n n CB6 HB62 DGA sing 446 n n CB7 CB8 DGA sing 447 n n CB7 HB71 DGA sing 448 n n CB7 HB72 DGA sing 449 n n CB8 CB9 DGA sing 450 n n CB8 HB81 DGA sing 451 n n CB8 HB82 DGA sing 452 n n CB9 CAB DGA sing 453 n n CB9 HB91 DGA sing 454 n n CB9 HB92 DGA sing 455 n n CAB CBB DGA sing 456 n n CAB HBT1 DGA sing 457 n n CAB HBT2 DGA sing 458 n n CBB CCB DGA sing 459 n n CBB HBE1 DGA sing 460 n n CBB HBE2 DGA sing 461 n n CCB CDB DGA sing 462 n n CCB HBW1 DGA sing 463 n n CCB HBW2 DGA sing 464 n n CDB CEB DGA sing 465 n n CDB HBH1 DGA sing 466 n n CDB HBH2 DGA sing 467 n n CEB CFB DGA sing 468 n n CEB HBF1 DGA sing 469 n n CEB HBF2 DGA sing 470 n n CFB CGB DGA sing 471 n n CFB HBN1 DGA sing 472 n n CFB HBN2 DGA sing 473 n n CGB CHB DGA sing 474 n n CGB HBS1 DGA sing 475 n n CGB HBS2 DGA sing 476 n n CHB CIB DGA sing 477 n n CHB HBV1 DGA sing 478 n n CHB HBV2 DGA sing 479 n n CIB HBG1 DGA sing 480 n n CIB HBG2 DGA sing 481 n n CIB HBG3 DGA sing 482 n n OG1 CG1 DGA sing 483 n n CG1 CG2 DGA sing 484 n n CG1 HG11 DGA sing 485 n n CG1 HG12 DGA sing 486 n n CG2 OG2 DGA sing 487 n n CG2 CG3 DGA sing 488 n n CG2 HG2 DGA sing 489 n n CG3 OXT DGA sing 490 n n CG3 HG31 DGA sing 491 n n CG3 HG32 DGA sing 492 n n OXT HXT DGA sing 493 n n # _atom_sites.entry_id 5M7K _atom_sites.fract_transf_matrix[1][1] 0.017271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC A 1 401 1333 HEC HEM . F 5 HEC A 1 402 1334 HEC HEM . G 5 HEC A 1 403 1335 HEC HEM . H 5 HEC A 1 404 1336 HEC HEM . I 6 DGA A 1 405 1278 DGA DGA . J 7 BCL B 1 301 1274 BCL BCL . K 7 BCL B 1 302 1275 BCL BCL . L 7 BCL B 1 303 1276 BCL BCL . M 8 BPB B 1 304 1277 BPB BPB . N 9 MPG B 1 305 1279 MPG MPG . O 9 MPG B 1 306 1280 MPG MPG . P 7 BCL C 1 401 1324 BCL BCL . Q 8 BPB C 1 402 1325 BPB BPB . R 10 FE2 C 1 403 1326 FE2 FE2 . S 11 MQ7 C 1 404 1327 MQ7 MQ7 . T 12 NS5 C 1 405 1328 NS5 NS5 . U 13 OTP C 1 406 1329 OTP OTP . V 9 MPG C 1 407 1330 MPG MPG . W 14 PO4 C 1 408 1331 PO4 PO4 . X 14 PO4 C 1 409 1332 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . I 6 -16.316 -30.546 54.017 1 70.63 ? CA1 DGA 405 A 1 HETATM 2 C CA2 DGA . . . I 6 -17.056 -31.208 52.845 1 78.3 ? CA2 DGA 405 A 1 HETATM 3 C CA3 DGA . . . I 6 -16.088 -31.326 51.649 1 88.99 ? CA3 DGA 405 A 1 HETATM 4 C CA4 DGA . . . I 6 -16.729 -32.148 50.503 1 91.99 ? CA4 DGA 405 A 1 HETATM 5 C CA5 DGA . . . I 6 -15.957 -31.922 49.18 1 91.23 ? CA5 DGA 405 A 1 HETATM 6 C CA6 DGA . . . I 6 -14.619 -32.71 49.178 1 87.12 ? CA6 DGA 405 A 1 HETATM 7 C CA7 DGA . . . I 6 -13.657 -32.138 48.108 1 89.34 ? CA7 DGA 405 A 1 HETATM 8 C CA8 DGA . . . I 6 -13.67 -33.033 46.846 1 90.74 ? CA8 DGA 405 A 1 HETATM 9 C CA9 DGA . . . I 6 -12.977 -32.288 45.682 1 88.23 ? CA9 DGA 405 A 1 HETATM 10 C CAA DGA . . . I 6 -13.891 -32.313 44.443 0 91.19 ? CAA DGA 405 A 1 HETATM 11 C CBA DGA . . . I 6 -13.506 -31.137 43.522 0 90.69 ? CBA DGA 405 A 1 HETATM 12 C CCA DGA . . . I 6 -14.642 -30.896 42.51 0 92.87 ? CCA DGA 405 A 1 HETATM 13 O OA1 DGA . . . I 6 -15.472 -29.695 53.783 1 66.98 ? OA1 DGA 405 A 1 HETATM 14 C CB1 DGA . . . I 6 -15.385 -33.743 55.205 1 76.62 ? CB1 DGA 405 A 1 HETATM 15 C CB2 DGA . . . I 6 -13.842 -33.674 55.213 1 71.05 ? CB2 DGA 405 A 1 HETATM 16 C CB3 DGA . . . I 6 -13.287 -33.251 53.833 1 76.35 ? CB3 DGA 405 A 1 HETATM 17 C CB4 DGA . . . I 6 -11.75 -33.085 53.946 1 64.56 ? CB4 DGA 405 A 1 HETATM 18 C CB5 DGA . . . I 6 -11.141 -32.628 52.598 1 58.41 ? CB5 DGA 405 A 1 HETATM 19 C CB6 DGA . . . I 6 -9.61 -32.798 52.667 1 50.21 ? CB6 DGA 405 A 1 HETATM 20 C CB7 DGA . . . I 6 -8.929 -31.512 52.146 1 53.62 ? CB7 DGA 405 A 1 HETATM 21 C CB8 DGA . . . I 6 -7.414 -31.761 52.004 1 56.09 ? CB8 DGA 405 A 1 HETATM 22 C CB9 DGA . . . I 6 -6.93 -31.224 50.635 1 70.95 ? CB9 DGA 405 A 1 HETATM 23 C CAB DGA . . . I 6 -5.406 -30.967 50.7 1 60.94 ? CAB DGA 405 A 1 HETATM 24 C CBB DGA . . . I 6 -4.676 -32.021 49.837 1 62.15 ? CBB DGA 405 A 1 HETATM 25 C CCB DGA . . . I 6 -3.526 -32.64 50.655 1 61.04 ? CCB DGA 405 A 1 HETATM 26 C CDB DGA . . . I 6 -4.09 -33.677 51.648 1 56.33 ? CDB DGA 405 A 1 HETATM 27 C CEB DGA . . . I 6 -3.018 -34.749 51.914 1 60.17 ? CEB DGA 405 A 1 HETATM 28 C CFB DGA . . . I 6 -3.439 -36.086 51.27 1 67.91 ? CFB DGA 405 A 1 HETATM 29 C CGB DGA . . . I 6 -2.201 -37.002 51.147 1 75.9 ? CGB DGA 405 A 1 HETATM 30 C CHB DGA . . . I 6 -2.584 -38.457 51.49 1 66.88 ? CHB DGA 405 A 1 HETATM 31 C CIB DGA . . . I 6 -1.306 -39.288 51.693 1 62.45 ? CIB DGA 405 A 1 HETATM 32 O OB1 DGA . . . I 6 -15.967 -34.608 54.573 0 77.05 ? OB1 DGA 405 A 1 HETATM 33 O OG1 DGA . . . I 6 -16.612 -30.925 55.363 0 74.2 ? OG1 DGA 405 A 1 HETATM 34 C CG1 DGA . . . I 6 -17.789 -31.731 55.519 1 78.43 ? CG1 DGA 405 A 1 HETATM 35 C CG2 DGA . . . I 6 -17.516 -33.135 56.195 1 77.95 ? CG2 DGA 405 A 1 HETATM 36 O OG2 DGA . . . I 6 -16.13 -32.778 55.949 1 80.05 ? OG2 DGA 405 A 1 HETATM 37 C CG3 DGA . . . I 6 -16.846 -33.55 57.543 1 62.77 ? CG3 DGA 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #