data_5M7K # _model_server_result.job_id X_P8zM3P-EWVBJHsLAIrpA _model_server_result.datetime_utc '2024-11-08 13:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":405}' # _entry.id 5M7K # _exptl.entry_id 5M7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.904 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 15-cis-1,2-dihydroneurosporene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7K _cell.length_a 57.9 _cell.length_b 84.8 _cell.length_c 384.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C FME 1 D FME 1 1_555 D N TYR 2 D TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 111 A HIS 91 1_555 E FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A NE2 HIS 144 A HIS 124 1_555 H FE HEC . A HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A NE2 HIS 156 A HIS 136 1_555 F FE HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc4 A NE2 HIS 268 A HIS 248 1_555 G FE HEC . A HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc5 A NE2 HIS 329 A HIS 309 1_555 H FE HEC . A HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 B NE2 HIS 191 B HIS 190 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc7 B NE2 HIS 231 B HIS 230 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 C NE2 HIS 218 C HIS 217 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc9 C OE1 GLU 233 C GLU 232 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc10 C OE2 GLU 233 C GLU 232 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc11 C NE2 HIS 265 C HIS 264 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'C40 H60' _chem_comp.formula_weight 540.904 _chem_comp.id NS5 _chem_comp.mon_nstd_flag . _chem_comp.name 15-cis-1,2-dihydroneurosporene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CM1 NS5 sing 928 n n C1 CM2 NS5 sing 929 n n C1 C2 NS5 sing 930 n n C1 H1 NS5 sing 931 n n CM1 HM11 NS5 sing 932 n n CM1 HM12 NS5 sing 933 n n CM1 HM13 NS5 sing 934 n n CM2 HM21 NS5 sing 935 n n CM2 HM22 NS5 sing 936 n n CM2 HM23 NS5 sing 937 n n C2 C3 NS5 sing 938 n n C2 H21 NS5 sing 939 n n C2 H22 NS5 sing 940 n n C3 C4 NS5 sing 941 n n C3 H31 NS5 sing 942 n n C3 H32 NS5 sing 943 n n C4 C5 NS5 sing 944 n n C4 H41 NS5 sing 945 n n C4 H42 NS5 sing 946 n n C5 C6 NS5 sing 947 n n C5 C7 NS5 doub 948 e n C6 H61 NS5 sing 949 n n C6 H62 NS5 sing 950 n n C6 H63 NS5 sing 951 n n C7 C8 NS5 sing 952 n n C7 H7 NS5 sing 953 n n C8 C9 NS5 sing 954 n n C8 H81 NS5 sing 955 n n C8 H82 NS5 sing 956 n n C9 C10 NS5 sing 957 n n C9 H91 NS5 sing 958 n n C9 H92 NS5 sing 959 n n C10 C11 NS5 sing 960 n n C10 C12 NS5 doub 961 e n C11 H111 NS5 sing 962 n n C11 H112 NS5 sing 963 n n C11 H113 NS5 sing 964 n n C12 C13 NS5 sing 965 n n C12 H12 NS5 sing 966 n n C13 C14 NS5 doub 967 e n C13 H13 NS5 sing 968 n n C14 C15 NS5 sing 969 n n C14 H14 NS5 sing 970 n n C15 C16 NS5 sing 971 n n C15 C17 NS5 doub 972 e n C16 H161 NS5 sing 973 n n C16 H162 NS5 sing 974 n n C16 H163 NS5 sing 975 n n C17 C18 NS5 sing 976 n n C17 H17 NS5 sing 977 n n C18 C19 NS5 doub 978 z n C18 H18 NS5 sing 979 n n C19 C20 NS5 sing 980 n n C19 H19 NS5 sing 981 n n C20 C21 NS5 doub 982 e n C20 H20 NS5 sing 983 n n C21 C22 NS5 sing 984 n n C21 C23 NS5 sing 985 n n C22 H221 NS5 sing 986 n n C22 H222 NS5 sing 987 n n C22 H223 NS5 sing 988 n n C23 C24 NS5 doub 989 e n C23 H23 NS5 sing 990 n n C24 C25 NS5 sing 991 n n C24 H24 NS5 sing 992 n n C25 C26 NS5 doub 993 e n C25 H25 NS5 sing 994 n n C26 C27 NS5 sing 995 n n C26 C28 NS5 sing 996 n n C27 H271 NS5 sing 997 n n C27 H272 NS5 sing 998 n n C27 H273 NS5 sing 999 n n C28 C29 NS5 doub 1000 e n C28 H28 NS5 sing 1001 n n C29 C30 NS5 sing 1002 n n C29 H29 NS5 sing 1003 n n C30 C31 NS5 doub 1004 e n C30 H30 NS5 sing 1005 n n C31 C32 NS5 sing 1006 n n C31 C33 NS5 sing 1007 n n C32 H321 NS5 sing 1008 n n C32 H322 NS5 sing 1009 n n C32 H323 NS5 sing 1010 n n C33 C34 NS5 sing 1011 n n C33 H331 NS5 sing 1012 n n C33 H332 NS5 sing 1013 n n C34 C35 NS5 sing 1014 n n C34 H341 NS5 sing 1015 n n C34 H342 NS5 sing 1016 n n C35 C36 NS5 doub 1017 n n C35 H351 NS5 sing 1018 n n C36 CM3 NS5 sing 1019 n n C36 CM4 NS5 sing 1020 n n CM3 HM31 NS5 sing 1021 n n CM3 HM32 NS5 sing 1022 n n CM3 HM33 NS5 sing 1023 n n CM4 HM41 NS5 sing 1024 n n CM4 HM42 NS5 sing 1025 n n CM4 HM43 NS5 sing 1026 n n # _atom_sites.entry_id 5M7K _atom_sites.fract_transf_matrix[1][1] 0.017271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC A 1 401 1333 HEC HEM . F 5 HEC A 1 402 1334 HEC HEM . G 5 HEC A 1 403 1335 HEC HEM . H 5 HEC A 1 404 1336 HEC HEM . I 6 DGA A 1 405 1278 DGA DGA . J 7 BCL B 1 301 1274 BCL BCL . K 7 BCL B 1 302 1275 BCL BCL . L 7 BCL B 1 303 1276 BCL BCL . M 8 BPB B 1 304 1277 BPB BPB . N 9 MPG B 1 305 1279 MPG MPG . O 9 MPG B 1 306 1280 MPG MPG . P 7 BCL C 1 401 1324 BCL BCL . Q 8 BPB C 1 402 1325 BPB BPB . R 10 FE2 C 1 403 1326 FE2 FE2 . S 11 MQ7 C 1 404 1327 MQ7 MQ7 . T 12 NS5 C 1 405 1328 NS5 NS5 . U 13 OTP C 1 406 1329 OTP OTP . V 9 MPG C 1 407 1330 MPG MPG . W 14 PO4 C 1 408 1331 PO4 PO4 . X 14 PO4 C 1 409 1332 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NS5 . . . T 12 25.125 -39.044 56.111 1 75.2 ? C1 NS5 405 C 1 HETATM 2 C CM1 NS5 . . . T 12 26.372 -39.032 57.016 1 56.21 ? CM1 NS5 405 C 1 HETATM 3 C CM2 NS5 . . . T 12 24.127 -40.106 56.639 1 68.21 ? CM2 NS5 405 C 1 HETATM 4 C C2 NS5 . . . T 12 24.481 -37.64 56.118 1 83.32 ? C2 NS5 405 C 1 HETATM 5 C C3 NS5 . . . T 12 23.91 -37.274 54.731 0 83.61 ? C3 NS5 405 C 1 HETATM 6 C C4 NS5 . . . T 12 22.389 -37.655 54.677 0 82.56 ? C4 NS5 405 C 1 HETATM 7 C C5 NS5 . . . T 12 21.516 -36.452 54.17 0 85.06 ? C5 NS5 405 C 1 HETATM 8 C C6 NS5 . . . T 12 22.147 -35.327 53.344 0 85.12 ? C6 NS5 405 C 1 HETATM 9 C C7 NS5 . . . T 12 20.163 -36.429 54.481 0 85.45 ? C7 NS5 405 C 1 HETATM 10 C C8 NS5 . . . T 12 19.213 -35.311 54.044 0 80.32 ? C8 NS5 405 C 1 HETATM 11 C C9 NS5 . . . T 12 17.866 -35.626 54.74 0 81.05 ? C9 NS5 405 C 1 HETATM 12 C C10 NS5 . . . T 12 16.704 -34.731 54.251 0 73.67 ? C10 NS5 405 C 1 HETATM 13 C C11 NS5 . . . T 12 16.915 -33.704 53.147 1 67.86 ? C11 NS5 405 C 1 HETATM 14 C C12 NS5 . . . T 12 15.469 -34.888 54.836 0 71.16 ? C12 NS5 405 C 1 HETATM 15 C C13 NS5 . . . T 12 14.272 -34.045 54.422 1 67.49 ? C13 NS5 405 C 1 HETATM 16 C C14 NS5 . . . T 12 12.993 -34.426 54.857 1 63.24 ? C14 NS5 405 C 1 HETATM 17 C C15 NS5 . . . T 12 11.762 -33.577 54.464 1 55.14 ? C15 NS5 405 C 1 HETATM 18 C C16 NS5 . . . T 12 11.974 -32.256 53.744 1 53.85 ? C16 NS5 405 C 1 HETATM 19 C C17 NS5 . . . T 12 10.477 -33.984 54.775 1 51.86 ? C17 NS5 405 C 1 HETATM 20 C C18 NS5 . . . T 12 9.309 -33.072 54.364 1 54.55 ? C18 NS5 405 C 1 HETATM 21 C C19 NS5 . . . T 12 8.025 -33.577 54.139 1 50.88 ? C19 NS5 405 C 1 HETATM 22 C C20 NS5 . . . T 12 7.727 -35.087 54.298 1 47.76 ? C20 NS5 405 C 1 HETATM 23 C C21 NS5 . . . T 12 6.416 -35.53 54.153 1 49.74 ? C21 NS5 405 C 1 HETATM 24 C C22 NS5 . . . T 12 5.291 -34.558 53.84 1 49.44 ? C22 NS5 405 C 1 HETATM 25 C C23 NS5 . . . T 12 6.101 -37.016 54.309 1 53.63 ? C23 NS5 405 C 1 HETATM 26 C C24 NS5 . . . T 12 4.883 -37.542 53.934 1 56.05 ? C24 NS5 405 C 1 HETATM 27 C C25 NS5 . . . T 12 4.745 -39.049 54.159 1 54.56 ? C25 NS5 405 C 1 HETATM 28 C C26 NS5 . . . T 12 3.678 -39.781 53.701 1 57.22 ? C26 NS5 405 C 1 HETATM 29 C C27 NS5 . . . T 12 2.551 -39.118 52.946 1 59.02 ? C27 NS5 405 C 1 HETATM 30 C C28 NS5 . . . T 12 3.64 -41.286 53.977 1 66.04 ? C28 NS5 405 C 1 HETATM 31 C C29 NS5 . . . T 12 3.86 -42.236 52.976 1 73.74 ? C29 NS5 405 C 1 HETATM 32 C C30 NS5 . . . T 12 4.143 -41.872 51.515 1 70.77 ? C30 NS5 405 C 1 HETATM 33 C C31 NS5 . . . T 12 3.133 -42.13 50.599 1 68.37 ? C31 NS5 405 C 1 HETATM 34 C C32 NS5 . . . T 12 1.831 -42.752 51.105 1 66.72 ? C32 NS5 405 C 1 HETATM 35 C C33 NS5 . . . T 12 3.286 -41.82 49.077 1 73.45 ? C33 NS5 405 C 1 HETATM 36 C C34 NS5 . . . T 12 2.746 -43.054 48.33 1 83.33 ? C34 NS5 405 C 1 HETATM 37 C C35 NS5 . . . T 12 2.533 -42.767 46.82 1 95.07 ? C35 NS5 405 C 1 HETATM 38 C C36 NS5 . . . T 12 1.684 -43.58 46.1 1 96.38 ? C36 NS5 405 C 1 HETATM 39 C CM3 NS5 . . . T 12 1.458 -43.326 44.618 1 85.19 ? CM3 NS5 405 C 1 HETATM 40 C CM4 NS5 . . . T 12 0.96 -44.75 46.807 1 89.64 ? CM4 NS5 405 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #