data_5M7L # _model_server_result.job_id p0eZhQ0hPo7LjAIcTzyWvg _model_server_result.datetime_utc '2024-11-23 18:03:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5M7L # _exptl.entry_id 5M7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7L _cell.length_a 57.6 _cell.length_b 82.9 _cell.length_c 382.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C FME 1 D FME 1 1_555 D N TYR 2 D TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 111 A HIS 91 1_555 E FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc2 A NE2 HIS 144 A HIS 124 1_555 H FE HEC . A HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A NE2 HIS 156 A HIS 136 1_555 F FE HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A NE2 HIS 268 A HIS 248 1_555 G FE HEC . A HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc5 A NE2 HIS 329 A HIS 309 1_555 H FE HEC . A HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 B NE2 HIS 191 B HIS 190 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc7 B NE2 HIS 231 B HIS 230 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc8 C NE2 HIS 218 C HIS 217 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc9 C OE1 GLU 233 C GLU 232 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc10 C OE2 GLU 233 C GLU 232 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc11 C NE2 HIS 265 C HIS 264 1_555 R FE FE2 . C FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 561 n n FE NB HEC sing 562 n n FE NC HEC sing 563 n n FE ND HEC sing 564 n n CHA C1A HEC doub 565 n n CHA C4D HEC sing 566 n n CHA HHA HEC sing 567 n n CHB C4A HEC doub 568 n n CHB C1B HEC sing 569 n n CHB HHB HEC sing 570 n n CHC C4B HEC doub 571 n n CHC C1C HEC sing 572 n n CHC HHC HEC sing 573 n n CHD C4C HEC doub 574 n n CHD C1D HEC sing 575 n n CHD HHD HEC sing 576 n n NA C1A HEC sing 577 n y NA C4A HEC sing 578 n y C1A C2A HEC sing 579 n y C2A C3A HEC doub 580 n y C2A CAA HEC sing 581 n n C3A C4A HEC sing 582 n y C3A CMA HEC sing 583 n n CMA HMA1 HEC sing 584 n n CMA HMA2 HEC sing 585 n n CMA HMA3 HEC sing 586 n n CAA CBA HEC sing 587 n n CAA HAA1 HEC sing 588 n n CAA HAA2 HEC sing 589 n n CBA CGA HEC sing 590 n n CBA HBA1 HEC sing 591 n n CBA HBA2 HEC sing 592 n n CGA O1A HEC doub 593 n n CGA O2A HEC sing 594 n n O2A H2A HEC sing 595 n n NB C1B HEC sing 596 n y NB C4B HEC sing 597 n y C1B C2B HEC doub 598 n y C2B C3B HEC sing 599 n y C2B CMB HEC sing 600 n n C3B C4B HEC sing 601 n y C3B CAB HEC doub 602 e n CMB HMB1 HEC sing 603 n n CMB HMB2 HEC sing 604 n n CMB HMB3 HEC sing 605 n n CAB CBB HEC sing 606 n n CAB HAB HEC sing 607 n n CBB HBB1 HEC sing 608 n n CBB HBB2 HEC sing 609 n n CBB HBB3 HEC sing 610 n n NC C1C HEC sing 611 n y NC C4C HEC sing 612 n y C1C C2C HEC doub 613 n y C2C C3C HEC sing 614 n y C2C CMC HEC sing 615 n n C3C C4C HEC sing 616 n y C3C CAC HEC doub 617 e n CMC HMC1 HEC sing 618 n n CMC HMC2 HEC sing 619 n n CMC HMC3 HEC sing 620 n n CAC CBC HEC sing 621 n n CAC HAC HEC sing 622 n n CBC HBC1 HEC sing 623 n n CBC HBC2 HEC sing 624 n n CBC HBC3 HEC sing 625 n n ND C1D HEC sing 626 n y ND C4D HEC sing 627 n y C1D C2D HEC doub 628 n y C2D C3D HEC sing 629 n y C2D CMD HEC sing 630 n n C3D C4D HEC doub 631 n y C3D CAD HEC sing 632 n n CMD HMD1 HEC sing 633 n n CMD HMD2 HEC sing 634 n n CMD HMD3 HEC sing 635 n n CAD CBD HEC sing 636 n n CAD HAD1 HEC sing 637 n n CAD HAD2 HEC sing 638 n n CBD CGD HEC sing 639 n n CBD HBD1 HEC sing 640 n n CBD HBD2 HEC sing 641 n n CGD O1D HEC doub 642 n n CGD O2D HEC sing 643 n n O2D H2D HEC sing 644 n n # _atom_sites.entry_id 5M7L _atom_sites.fract_transf_matrix[1][1] 0.017361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC A 1 401 1333 HEC HEM . F 5 HEC A 1 402 1334 HEC HEM . G 5 HEC A 1 403 1335 HEC HEM . H 5 HEC A 1 404 1336 HEC HEM . I 6 DGA A 1 405 1278 DGA DGA . J 7 BCL B 1 301 1274 BCL BCL . K 7 BCL B 1 302 1275 BCL BCL . L 7 BCL B 1 303 1276 BCL BCL . M 8 BPB B 1 304 1277 BPB BPB . N 9 MPG B 1 305 1279 MPG MPG . O 9 MPG B 1 306 1280 MPG MPG . P 7 BCL C 1 401 1324 BCL BCL . Q 8 BPB C 1 402 1325 BPB BPB . R 10 FE2 C 1 403 1326 FE2 FE2 . S 11 MQ7 C 1 404 1327 MQ7 MQ7 . T 12 NS5 C 1 405 1328 NS5 NS5 . U 13 OTP C 1 406 1329 OTP OTP . V 9 MPG C 1 407 1330 MPG MPG . W 14 PO4 C 1 408 1331 PO4 PO4 . X 14 PO4 C 1 409 1332 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 5 14.619 -35.565 -109.757 1 45.23 ? FE HEC 401 A 1 HETATM 2 C CHA HEC . . . E 5 12.125 -35.022 -112.074 1 74.7 ? CHA HEC 401 A 1 HETATM 3 C CHB HEC . . . E 5 16.897 -35.816 -112.188 1 76.15 ? CHB HEC 401 A 1 HETATM 4 C CHC HEC . . . E 5 17.06 -36.124 -107.365 1 72.96 ? CHC HEC 401 A 1 HETATM 5 C CHD HEC . . . E 5 12.232 -36.387 -107.37 1 72.1 ? CHD HEC 401 A 1 HETATM 6 N NA HEC . . . E 5 14.516 -35.414 -111.762 1 74.63 ? NA HEC 401 A 1 HETATM 7 C C1A HEC . . . E 5 13.4 -35.23 -112.552 1 75.06 ? C1A HEC 401 A 1 HETATM 8 C C2A HEC . . . E 5 13.815 -35.305 -113.943 1 75.98 ? C2A HEC 401 A 1 HETATM 9 C C3A HEC . . . E 5 15.14 -35.521 -113.964 1 76.17 ? C3A HEC 401 A 1 HETATM 10 C C4A HEC . . . E 5 15.6 -35.598 -112.594 1 75.67 ? C4A HEC 401 A 1 HETATM 11 C CMA HEC . . . E 5 16.061 -35.671 -115.195 1 77.01 ? CMA HEC 401 A 1 HETATM 12 C CAA HEC . . . E 5 12.877 -35.147 -115.162 1 76.35 ? CAA HEC 401 A 1 HETATM 13 C CBA HEC . . . E 5 12.857 -36.428 -115.988 1 77.89 ? CBA HEC 401 A 1 HETATM 14 C CGA HEC . . . E 5 11.581 -36.454 -116.771 1 79.32 ? CGA HEC 401 A 1 HETATM 15 O O1A HEC . . . E 5 10.527 -36.139 -116.165 1 79.25 ? O1A HEC 401 A 1 HETATM 16 O O2A HEC . . . E 5 11.62 -36.793 -117.983 1 80.83 ? O2A HEC 401 A 1 HETATM 17 N NB HEC . . . E 5 16.615 -36.055 -109.764 1 73.97 ? NB HEC 401 A 1 HETATM 18 C C1B HEC . . . E 5 17.359 -35.792 -110.89 1 75.37 ? C1B HEC 401 A 1 HETATM 19 C C2B HEC . . . E 5 18.711 -35.476 -110.475 1 75.89 ? C2B HEC 401 A 1 HETATM 20 C C3B HEC . . . E 5 18.772 -35.56 -109.135 1 74.8 ? C3B HEC 401 A 1 HETATM 21 C C4B HEC . . . E 5 17.447 -35.928 -108.671 1 73.78 ? C4B HEC 401 A 1 HETATM 22 C CMB HEC . . . E 5 19.834 -35.118 -111.475 1 77.37 ? CMB HEC 401 A 1 HETATM 23 C CAB HEC . . . E 5 19.969 -35.308 -108.183 1 51.03 ? CAB HEC 401 A 1 HETATM 24 C CBB HEC . . . E 5 21.172 -34.861 -108.563 1 51.49 ? CBB HEC 401 A 1 HETATM 25 N NC HEC . . . E 5 14.646 -36.261 -107.763 1 72.31 ? NC HEC 401 A 1 HETATM 26 C C1C HEC . . . E 5 15.753 -36.195 -106.943 1 72.07 ? C1C HEC 401 A 1 HETATM 27 C C2C HEC . . . E 5 15.308 -36.199 -105.568 1 70.68 ? C2C HEC 401 A 1 HETATM 28 C C3C HEC . . . E 5 13.968 -36.271 -105.565 1 70.13 ? C3C HEC 401 A 1 HETATM 29 C C4C HEC . . . E 5 13.536 -36.312 -106.944 1 71.36 ? C4C HEC 401 A 1 HETATM 30 C CMC HEC . . . E 5 16.282 -36.137 -104.374 1 70.43 ? CMC HEC 401 A 1 HETATM 31 C CAC HEC . . . E 5 12.969 -36.298 -104.384 1 69 ? CAC HEC 401 A 1 HETATM 32 C CBC HEC . . . E 5 13.302 -36.179 -103.095 1 68.73 ? CBC HEC 401 A 1 HETATM 33 N ND HEC . . . E 5 12.502 -35.75 -109.743 1 74.17 ? ND HEC 401 A 1 HETATM 34 C C1D HEC . . . E 5 11.75 -35.956 -108.586 1 73.19 ? C1D HEC 401 A 1 HETATM 35 C C2D HEC . . . E 5 10.366 -35.637 -108.857 1 73.12 ? C2D HEC 401 A 1 HETATM 36 C C3D HEC . . . E 5 10.339 -35.218 -110.33 1 73.94 ? C3D HEC 401 A 1 HETATM 37 C C4D HEC . . . E 5 11.701 -35.314 -110.796 1 74.31 ? C4D HEC 401 A 1 HETATM 38 C CMD HEC . . . E 5 9.172 -35.712 -107.881 1 72.34 ? CMD HEC 401 A 1 HETATM 39 C CAD HEC . . . E 5 9.118 -34.758 -111.141 1 74.26 ? CAD HEC 401 A 1 HETATM 40 C CBD HEC . . . E 5 8.787 -33.36 -110.636 1 73.86 ? CBD HEC 401 A 1 HETATM 41 C CGD HEC . . . E 5 7.823 -32.689 -111.57 1 74.46 ? CGD HEC 401 A 1 HETATM 42 O O1D HEC . . . E 5 7.063 -33.413 -112.264 1 75.43 ? O1D HEC 401 A 1 HETATM 43 O O2D HEC . . . E 5 7.816 -31.431 -111.609 1 74.01 ? O2D HEC 401 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #