data_5M7N # _model_server_result.job_id h0BzqIyxqEabn4JJR3DbkA _model_server_result.datetime_utc '2024-11-05 00:33:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5M7N # _exptl.entry_id 5M7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7N _cell.length_a 116.867 _cell.length_b 191.611 _cell.length_c 111.702 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 9 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A OD1 ASP 11 A ASP 10 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 C MG MG . A MG 501 1_555 G O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc4 B OD1 ASP 10 B ASP 9 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 B OD2 ASP 54 B ASP 53 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5M7N _atom_sites.fract_transf_matrix[1][1] 0.008557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 1 MG MG . D 3 ATP A 1 502 1 ATP ATP . E 2 MG B 1 501 2 MG MG . F 3 ATP B 1 502 2 ATP ATP . G 4 HOH A 1 601 101 HOH HOH . G 4 HOH A 2 602 74 HOH HOH . G 4 HOH A 3 603 38 HOH HOH . G 4 HOH A 4 604 15 HOH HOH . G 4 HOH A 5 605 93 HOH HOH . G 4 HOH A 6 606 69 HOH HOH . G 4 HOH A 7 607 24 HOH HOH . G 4 HOH A 8 608 115 HOH HOH . G 4 HOH A 9 609 45 HOH HOH . G 4 HOH A 10 610 9 HOH HOH . G 4 HOH A 11 611 124 HOH HOH . G 4 HOH A 12 612 23 HOH HOH . G 4 HOH A 13 613 50 HOH HOH . G 4 HOH A 14 614 36 HOH HOH . G 4 HOH A 15 615 33 HOH HOH . G 4 HOH A 16 616 106 HOH HOH . G 4 HOH A 17 617 37 HOH HOH . G 4 HOH A 18 618 102 HOH HOH . G 4 HOH A 19 619 88 HOH HOH . G 4 HOH A 20 620 65 HOH HOH . G 4 HOH A 21 621 108 HOH HOH . G 4 HOH A 22 622 46 HOH HOH . G 4 HOH A 23 623 27 HOH HOH . G 4 HOH A 24 624 111 HOH HOH . G 4 HOH A 25 625 67 HOH HOH . G 4 HOH A 26 626 112 HOH HOH . G 4 HOH A 27 627 79 HOH HOH . G 4 HOH A 28 628 118 HOH HOH . G 4 HOH A 29 629 40 HOH HOH . G 4 HOH A 30 630 114 HOH HOH . G 4 HOH A 31 631 5 HOH HOH . G 4 HOH A 32 632 116 HOH HOH . G 4 HOH A 33 633 41 HOH HOH . G 4 HOH A 34 634 44 HOH HOH . G 4 HOH A 35 635 29 HOH HOH . G 4 HOH A 36 636 54 HOH HOH . G 4 HOH A 37 637 91 HOH HOH . G 4 HOH A 38 638 7 HOH HOH . G 4 HOH A 39 639 52 HOH HOH . G 4 HOH A 40 640 21 HOH HOH . G 4 HOH A 41 641 109 HOH HOH . G 4 HOH A 42 642 58 HOH HOH . G 4 HOH A 43 643 71 HOH HOH . G 4 HOH A 44 644 122 HOH HOH . G 4 HOH A 45 645 57 HOH HOH . G 4 HOH A 46 646 85 HOH HOH . G 4 HOH A 47 647 25 HOH HOH . G 4 HOH A 48 648 110 HOH HOH . G 4 HOH A 49 649 75 HOH HOH . G 4 HOH A 50 650 107 HOH HOH . G 4 HOH A 51 651 55 HOH HOH . H 4 HOH B 1 601 105 HOH HOH . H 4 HOH B 2 602 34 HOH HOH . H 4 HOH B 3 603 11 HOH HOH . H 4 HOH B 4 604 89 HOH HOH . H 4 HOH B 5 605 80 HOH HOH . H 4 HOH B 6 606 113 HOH HOH . H 4 HOH B 7 607 28 HOH HOH . H 4 HOH B 8 608 86 HOH HOH . H 4 HOH B 9 609 97 HOH HOH . H 4 HOH B 10 610 51 HOH HOH . H 4 HOH B 11 611 94 HOH HOH . H 4 HOH B 12 612 32 HOH HOH . H 4 HOH B 13 613 20 HOH HOH . H 4 HOH B 14 614 87 HOH HOH . H 4 HOH B 15 615 42 HOH HOH . H 4 HOH B 16 616 62 HOH HOH . H 4 HOH B 17 617 61 HOH HOH . H 4 HOH B 18 618 99 HOH HOH . H 4 HOH B 19 619 19 HOH HOH . H 4 HOH B 20 620 56 HOH HOH . H 4 HOH B 21 621 98 HOH HOH . H 4 HOH B 22 622 18 HOH HOH . H 4 HOH B 23 623 70 HOH HOH . H 4 HOH B 24 624 126 HOH HOH . H 4 HOH B 25 625 13 HOH HOH . H 4 HOH B 26 626 35 HOH HOH . H 4 HOH B 27 627 95 HOH HOH . H 4 HOH B 28 628 30 HOH HOH . H 4 HOH B 29 629 103 HOH HOH . H 4 HOH B 30 630 22 HOH HOH . H 4 HOH B 31 631 123 HOH HOH . H 4 HOH B 32 632 16 HOH HOH . H 4 HOH B 33 633 121 HOH HOH . H 4 HOH B 34 634 119 HOH HOH . H 4 HOH B 35 635 63 HOH HOH . H 4 HOH B 36 636 117 HOH HOH . H 4 HOH B 37 637 31 HOH HOH . H 4 HOH B 38 638 82 HOH HOH . H 4 HOH B 39 639 12 HOH HOH . H 4 HOH B 40 640 100 HOH HOH . H 4 HOH B 41 641 10 HOH HOH . H 4 HOH B 42 642 83 HOH HOH . H 4 HOH B 43 643 77 HOH HOH . H 4 HOH B 44 644 49 HOH HOH . H 4 HOH B 45 645 60 HOH HOH . H 4 HOH B 46 646 53 HOH HOH . H 4 HOH B 47 647 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 -45.509 19.628 -16.624 1 67.74 ? PG ATP 502 A 1 HETATM 2 O O1G ATP . . . D 3 -44.262 18.813 -16.95 1 63.15 ? O1G ATP 502 A 1 HETATM 3 O O2G ATP . . . D 3 -45.298 20.726 -15.522 1 72.47 ? O2G ATP 502 A 1 HETATM 4 O O3G ATP . . . D 3 -46.681 18.762 -16.123 1 67.71 ? O3G ATP 502 A 1 HETATM 5 P PB ATP . . . D 3 -45.985 21.944 -18.369 1 57.57 ? PB ATP 502 A 1 HETATM 6 O O1B ATP . . . D 3 -46.782 22.114 -19.599 1 57.4 ? O1B ATP 502 A 1 HETATM 7 O O2B ATP . . . D 3 -46.555 22.83 -17.248 1 56.26 ? O2B ATP 502 A 1 HETATM 8 O O3B ATP . . . D 3 -46.001 20.41 -17.928 1 62.32 ? O3B ATP 502 A 1 HETATM 9 P PA ATP . . . D 3 -43.477 23.287 -17.771 1 54.43 ? PA ATP 502 A 1 HETATM 10 O O1A ATP . . . D 3 -43.584 24.776 -18.13 1 53.36 ? O1A ATP 502 A 1 HETATM 11 O O2A ATP . . . D 3 -43.777 23.043 -16.326 1 57.05 ? O2A ATP 502 A 1 HETATM 12 O O3A ATP . . . D 3 -44.503 22.448 -18.655 1 57.5 ? O3A ATP 502 A 1 HETATM 13 O O5' ATP . . . D 3 -42.033 22.777 -18.092 1 49.28 ? O5' ATP 502 A 1 HETATM 14 C C5' ATP . . . D 3 -41.525 22.471 -19.398 1 50.92 ? C5' ATP 502 A 1 HETATM 15 C C4' ATP . . . D 3 -40.013 22.471 -19.34 1 52.76 ? C4' ATP 502 A 1 HETATM 16 O O4' ATP . . . D 3 -39.478 23.027 -20.557 1 53.99 ? O4' ATP 502 A 1 HETATM 17 C C3' ATP . . . D 3 -39.365 23.286 -18.231 1 54.73 ? C3' ATP 502 A 1 HETATM 18 O O3' ATP . . . D 3 -38.112 22.715 -17.873 1 57.75 ? O3' ATP 502 A 1 HETATM 19 C C2' ATP . . . D 3 -39.274 24.684 -18.852 1 56.31 ? C2' ATP 502 A 1 HETATM 20 O O2' ATP . . . D 3 -38.139 25.421 -18.425 1 61.02 ? O2' ATP 502 A 1 HETATM 21 C C1' ATP . . . D 3 -39.087 24.372 -20.338 1 55.5 ? C1' ATP 502 A 1 HETATM 22 N N9 ATP . . . D 3 -39.856 25.246 -21.262 1 54.98 ? N9 ATP 502 A 1 HETATM 23 C C8 ATP . . . D 3 -41.182 25.2 -21.481 1 52.99 ? C8 ATP 502 A 1 HETATM 24 N N7 ATP . . . D 3 -41.573 25.901 -22.551 1 54.22 ? N7 ATP 502 A 1 HETATM 25 C C5 ATP . . . D 3 -40.361 26.431 -23.014 1 54.78 ? C5 ATP 502 A 1 HETATM 26 C C6 ATP . . . D 3 -40.06 27.151 -24.189 1 52.64 ? C6 ATP 502 A 1 HETATM 27 N N6 ATP . . . D 3 -40.955 27.515 -25.106 1 51.71 ? N6 ATP 502 A 1 HETATM 28 N N1 ATP . . . D 3 -38.754 27.455 -24.403 1 51.59 ? N1 ATP 502 A 1 HETATM 29 C C2 ATP . . . D 3 -37.845 27.092 -23.493 1 51.36 ? C2 ATP 502 A 1 HETATM 30 N N3 ATP . . . D 3 -38.02 26.404 -22.366 1 52.5 ? N3 ATP 502 A 1 HETATM 31 C C4 ATP . . . D 3 -39.305 26.065 -22.191 1 54.93 ? C4 ATP 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #