data_5M7P # _model_server_result.job_id '_JNylsY5BRkqF4jrO9utcA' _model_server_result.datetime_utc '2024-11-05 01:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5M7P # _exptl.entry_id 5M7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7P _cell.length_a 116.979 _cell.length_b 190.84 _cell.length_c 111.883 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 9 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc2 A OD1 ASP 11 A ASP 10 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A OD2 ASP 54 A ASP 53 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc4 B OD1 ASP 10 B ASP 9 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 B OD2 ASP 10 B ASP 9 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc6 B OD1 ASP 11 B ASP 10 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc7 B OE1 GLU 12 B GLU 11 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc8 B OD2 ASP 54 B ASP 53 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc9 E MG MG . B MG 501 1_555 H O HOH . B HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M7P _atom_sites.fract_transf_matrix[1][1] 0.008549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 1 MG MG . D 3 ADP A 1 502 2 ADP ADP . E 2 MG B 1 501 2 MG MG . F 3 ADP B 1 502 1 ADP ADP . G 4 HOH A 1 601 82 HOH HOH . G 4 HOH A 2 602 109 HOH HOH . G 4 HOH A 3 603 12 HOH HOH . G 4 HOH A 4 604 7 HOH HOH . G 4 HOH A 5 605 248 HOH HOH . G 4 HOH A 6 606 152 HOH HOH . G 4 HOH A 7 607 73 HOH HOH . G 4 HOH A 8 608 223 HOH HOH . G 4 HOH A 9 609 241 HOH HOH . G 4 HOH A 10 610 95 HOH HOH . G 4 HOH A 11 611 86 HOH HOH . G 4 HOH A 12 612 8 HOH HOH . G 4 HOH A 13 613 135 HOH HOH . G 4 HOH A 14 614 131 HOH HOH . G 4 HOH A 15 615 155 HOH HOH . G 4 HOH A 16 616 184 HOH HOH . G 4 HOH A 17 617 38 HOH HOH . G 4 HOH A 18 618 146 HOH HOH . G 4 HOH A 19 619 52 HOH HOH . G 4 HOH A 20 620 149 HOH HOH . G 4 HOH A 21 621 147 HOH HOH . G 4 HOH A 22 622 103 HOH HOH . G 4 HOH A 23 623 265 HOH HOH . G 4 HOH A 24 624 224 HOH HOH . G 4 HOH A 25 625 50 HOH HOH . G 4 HOH A 26 626 88 HOH HOH . G 4 HOH A 27 627 142 HOH HOH . G 4 HOH A 28 628 85 HOH HOH . G 4 HOH A 29 629 34 HOH HOH . G 4 HOH A 30 630 205 HOH HOH . G 4 HOH A 31 631 183 HOH HOH . G 4 HOH A 32 632 270 HOH HOH . G 4 HOH A 33 633 79 HOH HOH . G 4 HOH A 34 634 71 HOH HOH . G 4 HOH A 35 635 27 HOH HOH . G 4 HOH A 36 636 59 HOH HOH . G 4 HOH A 37 637 153 HOH HOH . G 4 HOH A 38 638 24 HOH HOH . G 4 HOH A 39 639 192 HOH HOH . G 4 HOH A 40 640 181 HOH HOH . G 4 HOH A 41 641 163 HOH HOH . G 4 HOH A 42 642 133 HOH HOH . G 4 HOH A 43 643 202 HOH HOH . G 4 HOH A 44 644 55 HOH HOH . G 4 HOH A 45 645 217 HOH HOH . G 4 HOH A 46 646 18 HOH HOH . G 4 HOH A 47 647 195 HOH HOH . G 4 HOH A 48 648 227 HOH HOH . G 4 HOH A 49 649 159 HOH HOH . G 4 HOH A 50 650 10 HOH HOH . G 4 HOH A 51 651 190 HOH HOH . G 4 HOH A 52 652 164 HOH HOH . G 4 HOH A 53 653 37 HOH HOH . G 4 HOH A 54 654 2 HOH HOH . G 4 HOH A 55 655 267 HOH HOH . G 4 HOH A 56 656 287 HOH HOH . G 4 HOH A 57 657 288 HOH HOH . G 4 HOH A 58 658 42 HOH HOH . G 4 HOH A 59 659 292 HOH HOH . G 4 HOH A 60 660 251 HOH HOH . G 4 HOH A 61 661 14 HOH HOH . G 4 HOH A 62 662 165 HOH HOH . G 4 HOH A 63 663 178 HOH HOH . G 4 HOH A 64 664 169 HOH HOH . G 4 HOH A 65 665 279 HOH HOH . G 4 HOH A 66 666 110 HOH HOH . G 4 HOH A 67 667 233 HOH HOH . G 4 HOH A 68 668 20 HOH HOH . G 4 HOH A 69 669 72 HOH HOH . G 4 HOH A 70 670 99 HOH HOH . G 4 HOH A 71 671 44 HOH HOH . G 4 HOH A 72 672 266 HOH HOH . G 4 HOH A 73 673 254 HOH HOH . G 4 HOH A 74 674 253 HOH HOH . G 4 HOH A 75 675 83 HOH HOH . G 4 HOH A 76 676 274 HOH HOH . G 4 HOH A 77 677 294 HOH HOH . G 4 HOH A 78 678 252 HOH HOH . G 4 HOH A 79 679 172 HOH HOH . G 4 HOH A 80 680 104 HOH HOH . G 4 HOH A 81 681 186 HOH HOH . G 4 HOH A 82 682 58 HOH HOH . G 4 HOH A 83 683 209 HOH HOH . G 4 HOH A 84 684 66 HOH HOH . G 4 HOH A 85 685 286 HOH HOH . G 4 HOH A 86 686 221 HOH HOH . G 4 HOH A 87 687 98 HOH HOH . G 4 HOH A 88 688 105 HOH HOH . G 4 HOH A 89 689 3 HOH HOH . G 4 HOH A 90 690 162 HOH HOH . G 4 HOH A 91 691 257 HOH HOH . G 4 HOH A 92 692 93 HOH HOH . G 4 HOH A 93 693 30 HOH HOH . G 4 HOH A 94 694 170 HOH HOH . G 4 HOH A 95 695 13 HOH HOH . G 4 HOH A 96 696 167 HOH HOH . G 4 HOH A 97 697 177 HOH HOH . G 4 HOH A 98 698 180 HOH HOH . G 4 HOH A 99 699 194 HOH HOH . G 4 HOH A 100 700 89 HOH HOH . G 4 HOH A 101 701 130 HOH HOH . G 4 HOH A 102 702 189 HOH HOH . G 4 HOH A 103 703 139 HOH HOH . G 4 HOH A 104 704 187 HOH HOH . G 4 HOH A 105 705 46 HOH HOH . G 4 HOH A 106 706 107 HOH HOH . G 4 HOH A 107 707 97 HOH HOH . G 4 HOH A 108 708 234 HOH HOH . G 4 HOH A 109 709 117 HOH HOH . G 4 HOH A 110 710 35 HOH HOH . G 4 HOH A 111 711 249 HOH HOH . G 4 HOH A 112 712 275 HOH HOH . G 4 HOH A 113 713 126 HOH HOH . G 4 HOH A 114 714 45 HOH HOH . G 4 HOH A 115 715 236 HOH HOH . G 4 HOH A 116 716 102 HOH HOH . G 4 HOH A 117 717 182 HOH HOH . G 4 HOH A 118 718 239 HOH HOH . G 4 HOH A 119 719 106 HOH HOH . G 4 HOH A 120 720 19 HOH HOH . G 4 HOH A 121 721 75 HOH HOH . G 4 HOH A 122 722 6 HOH HOH . G 4 HOH A 123 723 285 HOH HOH . G 4 HOH A 124 724 219 HOH HOH . G 4 HOH A 125 725 295 HOH HOH . G 4 HOH A 126 726 193 HOH HOH . G 4 HOH A 127 727 228 HOH HOH . G 4 HOH A 128 728 39 HOH HOH . G 4 HOH A 129 729 69 HOH HOH . G 4 HOH A 130 730 1 HOH HOH . G 4 HOH A 131 731 96 HOH HOH . G 4 HOH A 132 732 11 HOH HOH . G 4 HOH A 133 733 282 HOH HOH . G 4 HOH A 134 734 116 HOH HOH . G 4 HOH A 135 735 48 HOH HOH . G 4 HOH A 136 736 51 HOH HOH . G 4 HOH A 137 737 113 HOH HOH . G 4 HOH A 138 738 47 HOH HOH . G 4 HOH A 139 739 264 HOH HOH . G 4 HOH A 140 740 161 HOH HOH . G 4 HOH A 141 741 166 HOH HOH . G 4 HOH A 142 742 151 HOH HOH . G 4 HOH A 143 743 247 HOH HOH . G 4 HOH A 144 744 84 HOH HOH . G 4 HOH A 145 745 213 HOH HOH . G 4 HOH A 146 746 76 HOH HOH . G 4 HOH A 147 747 263 HOH HOH . G 4 HOH A 148 748 206 HOH HOH . G 4 HOH A 149 749 77 HOH HOH . G 4 HOH A 150 750 214 HOH HOH . G 4 HOH A 151 751 284 HOH HOH . G 4 HOH A 152 752 272 HOH HOH . G 4 HOH A 153 753 43 HOH HOH . G 4 HOH A 154 754 230 HOH HOH . G 4 HOH A 155 755 188 HOH HOH . G 4 HOH A 156 756 115 HOH HOH . G 4 HOH A 157 757 246 HOH HOH . G 4 HOH A 158 758 207 HOH HOH . G 4 HOH A 159 759 158 HOH HOH . H 4 HOH B 1 601 114 HOH HOH . H 4 HOH B 2 602 56 HOH HOH . H 4 HOH B 3 603 22 HOH HOH . H 4 HOH B 4 604 23 HOH HOH . H 4 HOH B 5 605 67 HOH HOH . H 4 HOH B 6 606 9 HOH HOH . H 4 HOH B 7 607 64 HOH HOH . H 4 HOH B 8 608 138 HOH HOH . H 4 HOH B 9 609 53 HOH HOH . H 4 HOH B 10 610 154 HOH HOH . H 4 HOH B 11 611 17 HOH HOH . H 4 HOH B 12 612 212 HOH HOH . H 4 HOH B 13 613 120 HOH HOH . H 4 HOH B 14 614 100 HOH HOH . H 4 HOH B 15 615 31 HOH HOH . H 4 HOH B 16 616 134 HOH HOH . H 4 HOH B 17 617 49 HOH HOH . H 4 HOH B 18 618 293 HOH HOH . H 4 HOH B 19 619 127 HOH HOH . H 4 HOH B 20 620 136 HOH HOH . H 4 HOH B 21 621 156 HOH HOH . H 4 HOH B 22 622 41 HOH HOH . H 4 HOH B 23 623 242 HOH HOH . H 4 HOH B 24 624 36 HOH HOH . H 4 HOH B 25 625 191 HOH HOH . H 4 HOH B 26 626 70 HOH HOH . H 4 HOH B 27 627 40 HOH HOH . H 4 HOH B 28 628 278 HOH HOH . H 4 HOH B 29 629 281 HOH HOH . H 4 HOH B 30 630 28 HOH HOH . H 4 HOH B 31 631 289 HOH HOH . H 4 HOH B 32 632 33 HOH HOH . H 4 HOH B 33 633 235 HOH HOH . H 4 HOH B 34 634 199 HOH HOH . H 4 HOH B 35 635 176 HOH HOH . H 4 HOH B 36 636 173 HOH HOH . H 4 HOH B 37 637 74 HOH HOH . H 4 HOH B 38 638 26 HOH HOH . H 4 HOH B 39 639 185 HOH HOH . H 4 HOH B 40 640 157 HOH HOH . H 4 HOH B 41 641 208 HOH HOH . H 4 HOH B 42 642 280 HOH HOH . H 4 HOH B 43 643 21 HOH HOH . H 4 HOH B 44 644 60 HOH HOH . H 4 HOH B 45 645 262 HOH HOH . H 4 HOH B 46 646 16 HOH HOH . H 4 HOH B 47 647 196 HOH HOH . H 4 HOH B 48 648 143 HOH HOH . H 4 HOH B 49 649 200 HOH HOH . H 4 HOH B 50 650 271 HOH HOH . H 4 HOH B 51 651 259 HOH HOH . H 4 HOH B 52 652 91 HOH HOH . H 4 HOH B 53 653 137 HOH HOH . H 4 HOH B 54 654 124 HOH HOH . H 4 HOH B 55 655 111 HOH HOH . H 4 HOH B 56 656 92 HOH HOH . H 4 HOH B 57 657 145 HOH HOH . H 4 HOH B 58 658 25 HOH HOH . H 4 HOH B 59 659 197 HOH HOH . H 4 HOH B 60 660 78 HOH HOH . H 4 HOH B 61 661 226 HOH HOH . H 4 HOH B 62 662 90 HOH HOH . H 4 HOH B 63 663 215 HOH HOH . H 4 HOH B 64 664 179 HOH HOH . H 4 HOH B 65 665 243 HOH HOH . H 4 HOH B 66 666 123 HOH HOH . H 4 HOH B 67 667 216 HOH HOH . H 4 HOH B 68 668 250 HOH HOH . H 4 HOH B 69 669 81 HOH HOH . H 4 HOH B 70 670 218 HOH HOH . H 4 HOH B 71 671 277 HOH HOH . H 4 HOH B 72 672 80 HOH HOH . H 4 HOH B 73 673 237 HOH HOH . H 4 HOH B 74 674 5 HOH HOH . H 4 HOH B 75 675 290 HOH HOH . H 4 HOH B 76 676 54 HOH HOH . H 4 HOH B 77 677 269 HOH HOH . H 4 HOH B 78 678 273 HOH HOH . H 4 HOH B 79 679 256 HOH HOH . H 4 HOH B 80 680 260 HOH HOH . H 4 HOH B 81 681 174 HOH HOH . H 4 HOH B 82 682 68 HOH HOH . H 4 HOH B 83 683 171 HOH HOH . H 4 HOH B 84 684 94 HOH HOH . H 4 HOH B 85 685 144 HOH HOH . H 4 HOH B 86 686 296 HOH HOH . H 4 HOH B 87 687 121 HOH HOH . H 4 HOH B 88 688 150 HOH HOH . H 4 HOH B 89 689 238 HOH HOH . H 4 HOH B 90 690 87 HOH HOH . H 4 HOH B 91 691 63 HOH HOH . H 4 HOH B 92 692 210 HOH HOH . H 4 HOH B 93 693 203 HOH HOH . H 4 HOH B 94 694 160 HOH HOH . H 4 HOH B 95 695 245 HOH HOH . H 4 HOH B 96 696 132 HOH HOH . H 4 HOH B 97 697 198 HOH HOH . H 4 HOH B 98 698 141 HOH HOH . H 4 HOH B 99 699 61 HOH HOH . H 4 HOH B 100 700 291 HOH HOH . H 4 HOH B 101 701 255 HOH HOH . H 4 HOH B 102 702 119 HOH HOH . H 4 HOH B 103 703 122 HOH HOH . H 4 HOH B 104 704 112 HOH HOH . H 4 HOH B 105 705 175 HOH HOH . H 4 HOH B 106 706 204 HOH HOH . H 4 HOH B 107 707 62 HOH HOH . H 4 HOH B 108 708 125 HOH HOH . H 4 HOH B 109 709 128 HOH HOH . H 4 HOH B 110 710 4 HOH HOH . H 4 HOH B 111 711 240 HOH HOH . H 4 HOH B 112 712 118 HOH HOH . H 4 HOH B 113 713 148 HOH HOH . H 4 HOH B 114 714 225 HOH HOH . H 4 HOH B 115 715 232 HOH HOH . H 4 HOH B 116 716 15 HOH HOH . H 4 HOH B 117 717 29 HOH HOH . H 4 HOH B 118 718 168 HOH HOH . H 4 HOH B 119 719 229 HOH HOH . H 4 HOH B 120 720 261 HOH HOH . H 4 HOH B 121 721 57 HOH HOH . H 4 HOH B 122 722 108 HOH HOH . H 4 HOH B 123 723 65 HOH HOH . H 4 HOH B 124 724 32 HOH HOH . H 4 HOH B 125 725 283 HOH HOH . H 4 HOH B 126 726 258 HOH HOH . H 4 HOH B 127 727 220 HOH HOH . H 4 HOH B 128 728 276 HOH HOH . H 4 HOH B 129 729 231 HOH HOH . H 4 HOH B 130 730 211 HOH HOH . H 4 HOH B 131 731 101 HOH HOH . H 4 HOH B 132 732 268 HOH HOH . H 4 HOH B 133 733 222 HOH HOH . H 4 HOH B 134 734 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 48.811 _atom_site.Cartn_y 53.379 _atom_site.Cartn_z -20.407 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.48 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #