data_5M7S # _model_server_result.job_id VsE4sbHBcpXpqVXX8boQVQ _model_server_result.datetime_utc '2024-11-25 00:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5M7S # _exptl.entry_id 5M7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7S _cell.length_a 101.908 _cell.length_b 101.908 _cell.length_c 282.799 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 663 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 663 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 663 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 663 _struct_conn.ptnr2_symmetry 6_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.944 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H16 N2 O4 S' _chem_comp.formula_weight 248.299 _chem_comp.id NHT _chem_comp.mon_nstd_flag . _chem_comp.name (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 NHT sing 237 n n C6 C5 NHT sing 238 n n C5 O5 NHT sing 239 n n C5 C4 NHT sing 240 n n O5 C1 NHT sing 241 n n C4 O4 NHT sing 242 n n C4 C3 NHT sing 243 n n C3 O3 NHT sing 244 n n C3 C2 NHT sing 245 n n C2 N2 NHT sing 246 n n C2 C1 NHT sing 247 n n N2 C7 NHT doub 248 n n C1 S1 NHT sing 249 n n S1 C7 NHT sing 250 n n C7 N1 NHT sing 251 n n N1 C9 NHT sing 252 n n C9 C10 NHT sing 253 n n O6 H6 NHT sing 254 n n C6 H6C1 NHT sing 255 n n C6 H6C2 NHT sing 256 n n C5 H5 NHT sing 257 n n C4 H4 NHT sing 258 n n C1 H1 NHT sing 259 n n O4 HA NHT sing 260 n n C3 H3 NHT sing 261 n n O3 HB NHT sing 262 n n C2 H2 NHT sing 263 n n C9 H9C1 NHT sing 264 n n C9 H9C2 NHT sing 265 n n C10 H8 NHT sing 266 n n C10 H11 NHT sing 267 n n C10 H12 NHT sing 268 n n N1 H13 NHT sing 269 n n # _atom_sites.entry_id 5M7S _atom_sites.fract_transf_matrix[1][1] 0.009813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NHT A 1 1001 1 NHT NHT . D 2 NHT B 1 1001 2 NHT NHT . E 3 HOH A 1 1101 19 HOH HOH . E 3 HOH A 2 1102 10 HOH HOH . E 3 HOH A 3 1103 20 HOH HOH . E 3 HOH A 4 1104 18 HOH HOH . E 3 HOH A 5 1105 1 HOH HOH . E 3 HOH A 6 1106 12 HOH HOH . E 3 HOH A 7 1107 13 HOH HOH . E 3 HOH A 8 1108 21 HOH HOH . F 3 HOH B 1 1101 23 HOH HOH . F 3 HOH B 2 1102 26 HOH HOH . F 3 HOH B 3 1103 9 HOH HOH . F 3 HOH B 4 1104 15 HOH HOH . F 3 HOH B 5 1105 8 HOH HOH . F 3 HOH B 6 1106 22 HOH HOH . F 3 HOH B 7 1107 14 HOH HOH . F 3 HOH B 8 1108 27 HOH HOH . F 3 HOH B 9 1109 25 HOH HOH . F 3 HOH B 10 1110 7 HOH HOH . F 3 HOH B 11 1111 24 HOH HOH . F 3 HOH B 12 1112 16 HOH HOH . F 3 HOH B 13 1113 6 HOH HOH . F 3 HOH B 14 1114 2 HOH HOH . F 3 HOH B 15 1115 3 HOH HOH . F 3 HOH B 16 1116 5 HOH HOH . F 3 HOH B 17 1117 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NHT . . . C 2 -16.216 3.795 38.188 1 54.88 ? C1 NHT 1001 A 1 HETATM 2 C C2 NHT . . . C 2 -16.243 2.654 37.17 1 55.11 ? C2 NHT 1001 A 1 HETATM 3 C C3 NHT . . . C 2 -15.204 1.558 37.411 1 54.75 ? C3 NHT 1001 A 1 HETATM 4 C C4 NHT . . . C 2 -13.833 2.208 37.633 1 53.02 ? C4 NHT 1001 A 1 HETATM 5 C C5 NHT . . . C 2 -13.931 3.181 38.805 1 53.19 ? C5 NHT 1001 A 1 HETATM 6 C C6 NHT . . . C 2 -12.626 3.877 39.123 1 49.74 ? C6 NHT 1001 A 1 HETATM 7 C C7 NHT . . . C 2 -18.095 2.213 38.441 1 53.13 ? C7 NHT 1001 A 1 HETATM 8 C C10 NHT . . . C 2 -19.77 0.926 41.049 1 50.46 ? C10 NHT 1001 A 1 HETATM 9 N N2 NHT . . . C 2 -17.633 2.15 37.228 1 51.99 ? N2 NHT 1001 A 1 HETATM 10 O O3 NHT . . . C 2 -15.173 0.673 36.279 1 53.1 ? O3 NHT 1001 A 1 HETATM 11 O O4 NHT . . . C 2 -12.841 1.215 37.92 1 50.99 ? O4 NHT 1001 A 1 HETATM 12 O O5 NHT . . . C 2 -14.901 4.212 38.513 1 53.57 ? O5 NHT 1001 A 1 HETATM 13 N N1 NHT . . . C 2 -19.271 1.621 38.751 1 52.3 ? N1 NHT 1001 A 1 HETATM 14 O O6 NHT . . . C 2 -12.149 4.602 37.984 1 49.74 ? O6 NHT 1001 A 1 HETATM 15 S S1 NHT . . . C 2 -17.156 3.138 39.61 1 54.28 ? S1 NHT 1001 A 1 HETATM 16 C C9 NHT . . . C 2 -20.058 1.894 39.944 1 50.14 ? C9 NHT 1001 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #