data_5M7S # _model_server_result.job_id Fte1FFJJUDm79Ghc8KYT5w _model_server_result.datetime_utc '2024-10-10 21:22:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 5M7S # _exptl.entry_id 5M7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7S _cell.length_a 101.908 _cell.length_b 101.908 _cell.length_c 282.799 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 663 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 663 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 663 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 663 _struct_conn.ptnr2_symmetry 6_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.944 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H16 N2 O4 S' _chem_comp.formula_weight 248.299 _chem_comp.id NHT _chem_comp.mon_nstd_flag . _chem_comp.name (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M7S _atom_sites.fract_transf_matrix[1][1] 0.009813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NHT A 1 1001 1 NHT NHT . D 2 NHT B 1 1001 2 NHT NHT . E 3 HOH A 1 1101 19 HOH HOH . E 3 HOH A 2 1102 10 HOH HOH . E 3 HOH A 3 1103 20 HOH HOH . E 3 HOH A 4 1104 18 HOH HOH . E 3 HOH A 5 1105 1 HOH HOH . E 3 HOH A 6 1106 12 HOH HOH . E 3 HOH A 7 1107 13 HOH HOH . E 3 HOH A 8 1108 21 HOH HOH . F 3 HOH B 1 1101 23 HOH HOH . F 3 HOH B 2 1102 26 HOH HOH . F 3 HOH B 3 1103 9 HOH HOH . F 3 HOH B 4 1104 15 HOH HOH . F 3 HOH B 5 1105 8 HOH HOH . F 3 HOH B 6 1106 22 HOH HOH . F 3 HOH B 7 1107 14 HOH HOH . F 3 HOH B 8 1108 27 HOH HOH . F 3 HOH B 9 1109 25 HOH HOH . F 3 HOH B 10 1110 7 HOH HOH . F 3 HOH B 11 1111 24 HOH HOH . F 3 HOH B 12 1112 16 HOH HOH . F 3 HOH B 13 1113 6 HOH HOH . F 3 HOH B 14 1114 2 HOH HOH . F 3 HOH B 15 1115 3 HOH HOH . F 3 HOH B 16 1116 5 HOH HOH . F 3 HOH B 17 1117 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NHT . . . D 2 19.812 3.375 26.967 1 47.6 ? C1 NHT 1001 B 1 HETATM 2 C C2 NHT . . . D 2 19.747 1.987 27.601 1 49.8 ? C2 NHT 1001 B 1 HETATM 3 C C3 NHT . . . D 2 18.604 1.122 27.073 1 49.23 ? C3 NHT 1001 B 1 HETATM 4 C C4 NHT . . . D 2 17.293 1.936 27.086 1 47.49 ? C4 NHT 1001 B 1 HETATM 5 C C5 NHT . . . D 2 17.496 3.172 26.211 1 47.54 ? C5 NHT 1001 B 1 HETATM 6 C C6 NHT . . . D 2 16.265 4.053 26.085 1 46.26 ? C6 NHT 1001 B 1 HETATM 7 C C7 NHT . . . D 2 21.542 1.814 26.193 1 49.33 ? C7 NHT 1001 B 1 HETATM 8 C C10 NHT . . . D 2 23.861 1.449 23.54 1 53.74 ? C10 NHT 1001 B 1 HETATM 9 N N2 NHT . . . D 2 21.079 1.396 27.334 1 48.84 ? N2 NHT 1001 B 1 HETATM 10 O O3 NHT . . . D 2 18.496 -0.052 27.885 1 45.57 ? O3 NHT 1001 B 1 HETATM 11 O O4 NHT . . . D 2 16.202 1.164 26.569 1 45 ? O4 NHT 1001 B 1 HETATM 12 O O5 NHT . . . D 2 18.555 3.986 26.767 1 50.35 ? O5 NHT 1001 B 1 HETATM 13 N N1 NHT . . . D 2 22.632 1.258 25.623 1 47.32 ? N1 NHT 1001 B 1 HETATM 14 O O6 NHT . . . D 2 15.742 4.425 27.368 1 42.86 ? O6 NHT 1001 B 1 HETATM 15 S S1 NHT . . . D 2 20.623 3.064 25.377 1 47.61 ? S1 NHT 1001 B 1 HETATM 16 C C9 NHT . . . D 2 22.677 0.873 24.224 1 50.42 ? C9 NHT 1001 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #