data_5M7S
#
_model_server_result.job_id            SwDcHObl9K0rRxU9FCHCSQ 
_model_server_result.datetime_utc      '2024-11-28 17:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m7s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    5M7S 
#
_exptl.entry_id    5M7S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              248.299 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M7S 
_cell.length_a            101.908 
_cell.length_b            101.908 
_cell.length_c            282.799 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M7S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             663 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              663 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             663 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              663 
_struct_conn.ptnr2_symmetry                 6_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.944 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C9 H16 N2 O4 S' 
_chem_comp.formula_weight    248.299 
_chem_comp.id                NHT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 NHT sing 237 n n 
C6 C5 NHT sing 238 n n 
C5 O5 NHT sing 239 n n 
C5 C4 NHT sing 240 n n 
O5 C1 NHT sing 241 n n 
C4 O4 NHT sing 242 n n 
C4 C3 NHT sing 243 n n 
C3 O3 NHT sing 244 n n 
C3 C2 NHT sing 245 n n 
C2 N2 NHT sing 246 n n 
C2 C1 NHT sing 247 n n 
N2 C7 NHT doub 248 n n 
C1 S1 NHT sing 249 n n 
S1 C7 NHT sing 250 n n 
C7 N1 NHT sing 251 n n 
N1 C9 NHT sing 252 n n 
C9 C10 NHT sing 253 n n 
O6 H6 NHT sing 254 n n 
C6 H6C1 NHT sing 255 n n 
C6 H6C2 NHT sing 256 n n 
C5 H5 NHT sing 257 n n 
C4 H4 NHT sing 258 n n 
C1 H1 NHT sing 259 n n 
O4 HA NHT sing 260 n n 
C3 H3 NHT sing 261 n n 
O3 HB NHT sing 262 n n 
C2 H2 NHT sing 263 n n 
C9 H9C1 NHT sing 264 n n 
C9 H9C2 NHT sing 265 n n 
C10 H8 NHT sing 266 n n 
C10 H11 NHT sing 267 n n 
C10 H12 NHT sing 268 n n 
N1 H13 NHT sing 269 n n 
#
_atom_sites.entry_id                     5M7S 
_atom_sites.fract_transf_matrix[1][1]    0.009813 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NHT A 1 1001 1 NHT NHT . 
D 2 NHT B 1 1001 2 NHT NHT . 
E 3 HOH A 1 1101 19 HOH HOH . 
E 3 HOH A 2 1102 10 HOH HOH . 
E 3 HOH A 3 1103 20 HOH HOH . 
E 3 HOH A 4 1104 18 HOH HOH . 
E 3 HOH A 5 1105 1 HOH HOH . 
E 3 HOH A 6 1106 12 HOH HOH . 
E 3 HOH A 7 1107 13 HOH HOH . 
E 3 HOH A 8 1108 21 HOH HOH . 
F 3 HOH B 1 1101 23 HOH HOH . 
F 3 HOH B 2 1102 26 HOH HOH . 
F 3 HOH B 3 1103 9 HOH HOH . 
F 3 HOH B 4 1104 15 HOH HOH . 
F 3 HOH B 5 1105 8 HOH HOH . 
F 3 HOH B 6 1106 22 HOH HOH . 
F 3 HOH B 7 1107 14 HOH HOH . 
F 3 HOH B 8 1108 27 HOH HOH . 
F 3 HOH B 9 1109 25 HOH HOH . 
F 3 HOH B 10 1110 7 HOH HOH . 
F 3 HOH B 11 1111 24 HOH HOH . 
F 3 HOH B 12 1112 16 HOH HOH . 
F 3 HOH B 13 1113 6 HOH HOH . 
F 3 HOH B 14 1114 2 HOH HOH . 
F 3 HOH B 15 1115 3 HOH HOH . 
F 3 HOH B 16 1116 5 HOH HOH . 
F 3 HOH B 17 1117 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NHT . . . D 2 19.812 3.375 26.967 1 47.6 ? C1 NHT 1001 B 1 
HETATM 2 C C2 NHT . . . D 2 19.747 1.987 27.601 1 49.8 ? C2 NHT 1001 B 1 
HETATM 3 C C3 NHT . . . D 2 18.604 1.122 27.073 1 49.23 ? C3 NHT 1001 B 1 
HETATM 4 C C4 NHT . . . D 2 17.293 1.936 27.086 1 47.49 ? C4 NHT 1001 B 1 
HETATM 5 C C5 NHT . . . D 2 17.496 3.172 26.211 1 47.54 ? C5 NHT 1001 B 1 
HETATM 6 C C6 NHT . . . D 2 16.265 4.053 26.085 1 46.26 ? C6 NHT 1001 B 1 
HETATM 7 C C7 NHT . . . D 2 21.542 1.814 26.193 1 49.33 ? C7 NHT 1001 B 1 
HETATM 8 C C10 NHT . . . D 2 23.861 1.449 23.54 1 53.74 ? C10 NHT 1001 B 1 
HETATM 9 N N2 NHT . . . D 2 21.079 1.396 27.334 1 48.84 ? N2 NHT 1001 B 1 
HETATM 10 O O3 NHT . . . D 2 18.496 -0.052 27.885 1 45.57 ? O3 NHT 1001 B 1 
HETATM 11 O O4 NHT . . . D 2 16.202 1.164 26.569 1 45 ? O4 NHT 1001 B 1 
HETATM 12 O O5 NHT . . . D 2 18.555 3.986 26.767 1 50.35 ? O5 NHT 1001 B 1 
HETATM 13 N N1 NHT . . . D 2 22.632 1.258 25.623 1 47.32 ? N1 NHT 1001 B 1 
HETATM 14 O O6 NHT . . . D 2 15.742 4.425 27.368 1 42.86 ? O6 NHT 1001 B 1 
HETATM 15 S S1 NHT . . . D 2 20.623 3.064 25.377 1 47.61 ? S1 NHT 1001 B 1 
HETATM 16 C C9 NHT . . . D 2 22.677 0.873 24.224 1 50.42 ? C9 NHT 1001 B 1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           437 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           16 
#