data_5M7T # _model_server_result.job_id QowRhEqNawXeoSRZVewzkQ _model_server_result.datetime_utc '2024-11-25 02:41:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5M7T # _exptl.entry_id 5M7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7T _cell.length_a 101.146 _cell.length_b 101.146 _cell.length_c 283.289 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 663 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 663 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 663 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 663 _struct_conn.ptnr2_symmetry 6_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.348 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O5 1' _chem_comp.formula_weight 361.372 _chem_comp.id GDV _chem_comp.mon_nstd_flag . _chem_comp.name (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C10 GDV doub 83 n n C10 C12 GDV sing 84 n n C10 N4 GDV sing 85 n n C12 H121 GDV sing 86 n n C12 H122 GDV sing 87 n n C12 H123 GDV sing 88 n n N4 C2 GDV sing 89 n n N4 H4 GDV sing 90 n n C2 C3 GDV sing 91 n n C2 C1 GDV sing 92 n n C2 H2 GDV sing 93 n n C3 O3 GDV sing 94 n n C3 C4 GDV sing 95 n n C3 H3 GDV sing 96 n n O3 HA GDV sing 97 n n C4 O4 GDV sing 98 n n C4 C5 GDV sing 99 n n C4 HB GDV sing 100 n n O4 HC GDV sing 101 n n C5 C6 GDV sing 102 n n C5 N1 GDV sing 103 n n C5 H5 GDV sing 104 n n C6 O5 GDV sing 105 n n C6 H6C1 GDV sing 106 n n C6 H6C2 GDV sing 107 n n O5 HD GDV sing 108 n n C1 N1 GDV doub 109 n y C1 N2 GDV sing 110 n y N1 C7 GDV sing 111 n y C7 C8 GDV doub 112 n y C7 H7 GDV sing 113 n n C8 N2 GDV sing 114 n y C8 C9 GDV sing 115 n n N2 HE GDV sing 116 n n C9 O2 GDV doub 117 n n C9 N3 GDV sing 118 n n N3 C11 GDV sing 119 n n N3 HF GDV sing 120 n n C11 C17 GDV sing 121 n y C11 C13 GDV doub 122 n y C17 C16 GDV doub 123 n y C17 H17 GDV sing 124 n n C16 C15 GDV sing 125 n y C16 H16 GDV sing 126 n n C15 C14 GDV doub 127 n y C15 H15 GDV sing 128 n n C14 C13 GDV sing 129 n y C14 H14 GDV sing 130 n n C13 H13 GDV sing 131 n n # _atom_sites.entry_id 5M7T _atom_sites.fract_transf_matrix[1][1] 0.009887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDV A 1 1001 2 GDV GDV . D 2 GDV B 1 1001 1 GDV GDV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 GDV . . . C 2 -21.687 -2.829 24.379 1 81.29 ? O1 GDV 1001 A 1 HETATM 2 C C10 GDV . . . C 2 -22.593 -2.14 24.796 1 67.54 ? C10 GDV 1001 A 1 HETATM 3 C C12 GDV . . . C 2 -23.736 -1.758 23.911 1 64.74 ? C12 GDV 1001 A 1 HETATM 4 N N4 GDV . . . C 2 -22.592 -1.661 26.03 1 63.99 ? N4 GDV 1001 A 1 HETATM 5 C C2 GDV . . . C 2 -21.496 -1.829 26.967 1 67.82 ? C2 GDV 1001 A 1 HETATM 6 C C3 GDV . . . C 2 -20.174 -1.141 26.523 1 71.86 ? C3 GDV 1001 A 1 HETATM 7 O O3 GDV . . . C 2 -20.189 0.167 27.104 1 67.5 ? O3 GDV 1001 A 1 HETATM 8 C C4 GDV . . . C 2 -18.862 -1.92 26.863 1 70.33 ? C4 GDV 1001 A 1 HETATM 9 O O4 GDV . . . C 2 -17.687 -1.297 26.286 1 62.46 ? O4 GDV 1001 A 1 HETATM 10 C C5 GDV . . . C 2 -19.01 -3.377 26.361 1 70.04 ? C5 GDV 1001 A 1 HETATM 11 C C6 GDV . . . C 2 -17.787 -4.274 26.509 1 64.65 ? C6 GDV 1001 A 1 HETATM 12 O O5 GDV . . . C 2 -17.488 -4.382 27.902 1 65.79 ? O5 GDV 1001 A 1 HETATM 13 C C1 GDV . . . C 2 -21.267 -3.249 27.347 1 77.59 ? C1 GDV 1001 A 1 HETATM 14 N N1 GDV . . . C 2 -20.151 -3.948 27.117 1 76.29 ? N1 GDV 1001 A 1 HETATM 15 C C7 GDV . . . C 2 -20.295 -5.164 27.668 1 79.03 ? C7 GDV 1001 A 1 HETATM 16 C C8 GDV . . . C 2 -21.537 -5.196 28.266 1 83.61 ? C8 GDV 1001 A 1 HETATM 17 N N2 GDV . . . C 2 -22.104 -4.015 28.056 1 87.45 ? N2 GDV 1001 A 1 HETATM 18 C C9 GDV . . . C 2 -22.157 -6.322 28.999 1 80.47 ? C9 GDV 1001 A 1 HETATM 19 O O2 GDV . . . C 2 -23.346 -6.437 28.857 1 82.33 ? O2 GDV 1001 A 1 HETATM 20 N N3 GDV . . . C 2 -21.356 -7.11 29.723 1 87.43 ? N3 GDV 1001 A 1 HETATM 21 C C11 GDV . . . C 2 -21.646 -8.309 30.307 1 104 ? C11 GDV 1001 A 1 HETATM 22 C C17 GDV . . . C 2 -20.573 -8.992 30.91 1 118.42 ? C17 GDV 1001 A 1 HETATM 23 C C16 GDV . . . C 2 -20.76 -10.234 31.528 1 120.97 ? C16 GDV 1001 A 1 HETATM 24 C C15 GDV . . . C 2 -22.028 -10.814 31.549 1 117.66 ? C15 GDV 1001 A 1 HETATM 25 C C14 GDV . . . C 2 -23.102 -10.155 30.949 1 108.23 ? C14 GDV 1001 A 1 HETATM 26 C C13 GDV . . . C 2 -22.912 -8.919 30.333 1 107.71 ? C13 GDV 1001 A 1 # _model_server_stats.io_time_ms 123 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 26 #