data_5M7T
#
_model_server_result.job_id            ZsO-VJa7EVuU-AY8QiVjUw 
_model_server_result.datetime_utc      '2024-11-28 19:21:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m7t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    5M7T 
#
_exptl.entry_id    5M7T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              361.372 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M7T 
_cell.length_a            101.146 
_cell.length_b            101.146 
_cell.length_c            283.289 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M7T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             663 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              663 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             663 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              663 
_struct_conn.ptnr2_symmetry                 6_545 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.348 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C17 H21 N4 O5 1' 
_chem_comp.formula_weight    361.372 
_chem_comp.id                GDV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C10 GDV doub 83 n n 
C10 C12 GDV sing 84 n n 
C10 N4 GDV sing 85 n n 
C12 H121 GDV sing 86 n n 
C12 H122 GDV sing 87 n n 
C12 H123 GDV sing 88 n n 
N4 C2 GDV sing 89 n n 
N4 H4 GDV sing 90 n n 
C2 C3 GDV sing 91 n n 
C2 C1 GDV sing 92 n n 
C2 H2 GDV sing 93 n n 
C3 O3 GDV sing 94 n n 
C3 C4 GDV sing 95 n n 
C3 H3 GDV sing 96 n n 
O3 HA GDV sing 97 n n 
C4 O4 GDV sing 98 n n 
C4 C5 GDV sing 99 n n 
C4 HB GDV sing 100 n n 
O4 HC GDV sing 101 n n 
C5 C6 GDV sing 102 n n 
C5 N1 GDV sing 103 n n 
C5 H5 GDV sing 104 n n 
C6 O5 GDV sing 105 n n 
C6 H6C1 GDV sing 106 n n 
C6 H6C2 GDV sing 107 n n 
O5 HD GDV sing 108 n n 
C1 N1 GDV doub 109 n y 
C1 N2 GDV sing 110 n y 
N1 C7 GDV sing 111 n y 
C7 C8 GDV doub 112 n y 
C7 H7 GDV sing 113 n n 
C8 N2 GDV sing 114 n y 
C8 C9 GDV sing 115 n n 
N2 HE GDV sing 116 n n 
C9 O2 GDV doub 117 n n 
C9 N3 GDV sing 118 n n 
N3 C11 GDV sing 119 n n 
N3 HF GDV sing 120 n n 
C11 C17 GDV sing 121 n y 
C11 C13 GDV doub 122 n y 
C17 C16 GDV doub 123 n y 
C17 H17 GDV sing 124 n n 
C16 C15 GDV sing 125 n y 
C16 H16 GDV sing 126 n n 
C15 C14 GDV doub 127 n y 
C15 H15 GDV sing 128 n n 
C14 C13 GDV sing 129 n y 
C14 H14 GDV sing 130 n n 
C13 H13 GDV sing 131 n n 
#
_atom_sites.entry_id                     5M7T 
_atom_sites.fract_transf_matrix[1][1]    0.009887 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00353 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDV A 1 1001 2 GDV GDV . 
D 2 GDV B 1 1001 1 GDV GDV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 GDV . . . D 2 14.973 -2.808 40.829 1 77.69 ? O1 GDV 1001 B 1 
HETATM 2 C C10 GDV . . . D 2 15.929 -2.425 40.146 1 85.36 ? C10 GDV 1001 B 1 
HETATM 3 C C12 GDV . . . D 2 17.244 -2.009 40.755 1 89.88 ? C12 GDV 1001 B 1 
HETATM 4 N N4 GDV . . . D 2 15.902 -2.318 38.814 1 79.67 ? N4 GDV 1001 B 1 
HETATM 5 C C2 GDV . . . D 2 14.746 -2.63 37.979 1 84.74 ? C2 GDV 1001 B 1 
HETATM 6 C C3 GDV . . . D 2 13.542 -1.696 38.246 1 78.81 ? C3 GDV 1001 B 1 
HETATM 7 O O3 GDV . . . D 2 13.551 -0.696 37.234 1 82.53 ? O3 GDV 1001 B 1 
HETATM 8 C C4 GDV . . . D 2 12.178 -2.39 38.202 1 81.01 ? C4 GDV 1001 B 1 
HETATM 9 O O4 GDV . . . D 2 11.169 -1.401 38.48 1 75.32 ? O4 GDV 1001 B 1 
HETATM 10 C C5 GDV . . . D 2 12.178 -3.629 39.141 1 79.78 ? C5 GDV 1001 B 1 
HETATM 11 C C6 GDV . . . D 2 10.812 -4.308 39.312 1 76.72 ? C6 GDV 1001 B 1 
HETATM 12 O O5 GDV . . . D 2 10.315 -4.773 38.049 1 73.18 ? O5 GDV 1001 B 1 
HETATM 13 C C1 GDV . . . D 2 14.349 -4.07 38.045 1 86.53 ? C1 GDV 1001 B 1 
HETATM 14 N N1 GDV . . . D 2 13.198 -4.541 38.555 1 76.88 ? N1 GDV 1001 B 1 
HETATM 15 C C7 GDV . . . D 2 13.193 -5.868 38.394 1 86.15 ? C7 GDV 1001 B 1 
HETATM 16 C C8 GDV . . . D 2 14.398 -6.223 37.776 1 92.53 ? C8 GDV 1001 B 1 
HETATM 17 N N2 GDV . . . D 2 15.067 -5.088 37.558 1 83.56 ? N2 GDV 1001 B 1 
HETATM 18 C C9 GDV . . . D 2 14.913 -7.563 37.33 1 97.24 ? C9 GDV 1001 B 1 
HETATM 19 O O2 GDV . . . D 2 15.971 -7.531 36.71 1 84.79 ? O2 GDV 1001 B 1 
HETATM 20 N N3 GDV . . . D 2 14.173 -8.674 37.529 1 106.11 ? N3 GDV 1001 B 1 
HETATM 21 C C11 GDV . . . D 2 14.384 -9.921 36.986 1 121.89 ? C11 GDV 1001 B 1 
HETATM 22 C C17 GDV . . . D 2 15.459 -10.291 36.147 1 123.07 ? C17 GDV 1001 B 1 
HETATM 23 C C16 GDV . . . D 2 15.578 -11.595 35.665 1 127.89 ? C16 GDV 1001 B 1 
HETATM 24 C C15 GDV . . . D 2 14.628 -12.559 35.995 1 133.05 ? C15 GDV 1001 B 1 
HETATM 25 C C14 GDV . . . D 2 13.556 -12.217 36.817 1 135.82 ? C14 GDV 1001 B 1 
HETATM 26 C C13 GDV . . . D 2 13.437 -10.912 37.305 1 135.09 ? C13 GDV 1001 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#