data_5M7T # _model_server_result.job_id 8xctYk3a2Lv8Ag4G_qYWGA _model_server_result.datetime_utc '2024-10-10 23:27:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 5M7T # _exptl.entry_id 5M7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M7T _cell.length_a 101.146 _cell.length_b 101.146 _cell.length_c 283.289 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 663 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 663 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 663 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 663 _struct_conn.ptnr2_symmetry 6_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.348 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O5 1' _chem_comp.formula_weight 361.372 _chem_comp.id GDV _chem_comp.mon_nstd_flag . _chem_comp.name (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M7T _atom_sites.fract_transf_matrix[1][1] 0.009887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDV A 1 1001 2 GDV GDV . D 2 GDV B 1 1001 1 GDV GDV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 GDV . . . D 2 14.973 -2.808 40.829 1 77.69 ? O1 GDV 1001 B 1 HETATM 2 C C10 GDV . . . D 2 15.929 -2.425 40.146 1 85.36 ? C10 GDV 1001 B 1 HETATM 3 C C12 GDV . . . D 2 17.244 -2.009 40.755 1 89.88 ? C12 GDV 1001 B 1 HETATM 4 N N4 GDV . . . D 2 15.902 -2.318 38.814 1 79.67 ? N4 GDV 1001 B 1 HETATM 5 C C2 GDV . . . D 2 14.746 -2.63 37.979 1 84.74 ? C2 GDV 1001 B 1 HETATM 6 C C3 GDV . . . D 2 13.542 -1.696 38.246 1 78.81 ? C3 GDV 1001 B 1 HETATM 7 O O3 GDV . . . D 2 13.551 -0.696 37.234 1 82.53 ? O3 GDV 1001 B 1 HETATM 8 C C4 GDV . . . D 2 12.178 -2.39 38.202 1 81.01 ? C4 GDV 1001 B 1 HETATM 9 O O4 GDV . . . D 2 11.169 -1.401 38.48 1 75.32 ? O4 GDV 1001 B 1 HETATM 10 C C5 GDV . . . D 2 12.178 -3.629 39.141 1 79.78 ? C5 GDV 1001 B 1 HETATM 11 C C6 GDV . . . D 2 10.812 -4.308 39.312 1 76.72 ? C6 GDV 1001 B 1 HETATM 12 O O5 GDV . . . D 2 10.315 -4.773 38.049 1 73.18 ? O5 GDV 1001 B 1 HETATM 13 C C1 GDV . . . D 2 14.349 -4.07 38.045 1 86.53 ? C1 GDV 1001 B 1 HETATM 14 N N1 GDV . . . D 2 13.198 -4.541 38.555 1 76.88 ? N1 GDV 1001 B 1 HETATM 15 C C7 GDV . . . D 2 13.193 -5.868 38.394 1 86.15 ? C7 GDV 1001 B 1 HETATM 16 C C8 GDV . . . D 2 14.398 -6.223 37.776 1 92.53 ? C8 GDV 1001 B 1 HETATM 17 N N2 GDV . . . D 2 15.067 -5.088 37.558 1 83.56 ? N2 GDV 1001 B 1 HETATM 18 C C9 GDV . . . D 2 14.913 -7.563 37.33 1 97.24 ? C9 GDV 1001 B 1 HETATM 19 O O2 GDV . . . D 2 15.971 -7.531 36.71 1 84.79 ? O2 GDV 1001 B 1 HETATM 20 N N3 GDV . . . D 2 14.173 -8.674 37.529 1 106.11 ? N3 GDV 1001 B 1 HETATM 21 C C11 GDV . . . D 2 14.384 -9.921 36.986 1 121.89 ? C11 GDV 1001 B 1 HETATM 22 C C17 GDV . . . D 2 15.459 -10.291 36.147 1 123.07 ? C17 GDV 1001 B 1 HETATM 23 C C16 GDV . . . D 2 15.578 -11.595 35.665 1 127.89 ? C16 GDV 1001 B 1 HETATM 24 C C15 GDV . . . D 2 14.628 -12.559 35.995 1 133.05 ? C15 GDV 1001 B 1 HETATM 25 C C14 GDV . . . D 2 13.556 -12.217 36.817 1 135.82 ? C14 GDV 1001 B 1 HETATM 26 C C13 GDV . . . D 2 13.437 -10.912 37.305 1 135.09 ? C13 GDV 1001 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #