data_5M7U
#
_model_server_result.job_id            CGVUjKM_r1evU91uiFYKiQ 
_model_server_result.datetime_utc      '2024-11-22 21:03:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m7u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    5M7U 
#
_exptl.entry_id    5M7U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.397 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-[3-[3-(trifluoromethyl)phenyl]propyl]pyrrolidin-2-yl]-~{N}-methyl-ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M7U 
_cell.length_a            101.23 
_cell.length_b            101.23 
_cell.length_c            284.673 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M7U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             663 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              663 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             663 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              663 
_struct_conn.ptnr2_symmetry                 6_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.53 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C18 H25 F3 N2 O4' 
_chem_comp.formula_weight    390.397 
_chem_comp.id                XHA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-[3-[3-(trifluoromethyl)phenyl]propyl]pyrrolidin-2-yl]-~{N}-methyl-ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C17 XHA sing 376 n n 
F2 C17 XHA sing 377 n n 
C17 F3 XHA sing 378 n n 
C17 C16 XHA sing 379 n n 
C15 C16 XHA doub 380 n y 
C15 C14 XHA sing 381 n y 
C16 C18 XHA sing 382 n y 
C14 C13 XHA doub 383 n y 
C18 C12 XHA doub 384 n y 
C13 C12 XHA sing 385 n y 
C12 C11 XHA sing 386 n n 
C11 C10 XHA sing 387 n n 
C10 C9 XHA sing 388 n n 
C4 C5 XHA sing 389 n n 
C4 C3 XHA sing 390 n n 
C4 N2 XHA sing 391 n n 
C5 C6 XHA sing 392 n n 
C5 O2 XHA sing 393 n n 
C9 N2 XHA sing 394 n n 
C3 C2 XHA sing 395 n n 
C6 O3 XHA sing 396 n n 
C6 C7 XHA sing 397 n n 
O4 C8 XHA sing 398 n n 
N2 C7 XHA sing 399 n n 
C7 C8 XHA sing 400 n n 
C2 N1 XHA sing 401 n n 
C2 O1 XHA doub 402 n n 
N1 C1 XHA sing 403 n n 
C4 H1 XHA sing 404 n n 
C14 H2 XHA sing 405 n n 
C5 H3 XHA sing 406 n n 
C6 H4 XHA sing 407 n n 
C11 H5 XHA sing 408 n n 
C11 H6 XHA sing 409 n n 
C7 H7 XHA sing 410 n n 
C8 H8 XHA sing 411 n n 
C8 H9 XHA sing 412 n n 
C9 H10 XHA sing 413 n n 
C9 H11 XHA sing 414 n n 
C10 H12 XHA sing 415 n n 
C10 H13 XHA sing 416 n n 
C13 H14 XHA sing 417 n n 
N1 H15 XHA sing 418 n n 
C3 H17 XHA sing 419 n n 
C3 H18 XHA sing 420 n n 
C1 H19 XHA sing 421 n n 
C1 H20 XHA sing 422 n n 
C1 H21 XHA sing 423 n n 
O2 H22 XHA sing 424 n n 
O3 H23 XHA sing 425 n n 
O4 H24 XHA sing 426 n n 
C15 H25 XHA sing 427 n n 
C18 H26 XHA sing 428 n n 
#
_atom_sites.entry_id                     5M7U 
_atom_sites.fract_transf_matrix[1][1]    0.009878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009878 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XHA A 1 1001 1 XHA DRG . 
D 2 XHA B 1 1001 2 XHA DRG . 
E 3 HOH A 1 1101 41 HOH HOH . 
E 3 HOH A 2 1102 1 HOH HOH . 
E 3 HOH A 3 1103 209 HOH HOH . 
E 3 HOH A 4 1104 45 HOH HOH . 
E 3 HOH A 5 1105 20 HOH HOH . 
E 3 HOH A 6 1106 1 HOH HOH . 
E 3 HOH A 7 1107 210 HOH HOH . 
E 3 HOH A 8 1108 22 HOH HOH . 
E 3 HOH A 9 1109 27 HOH HOH . 
E 3 HOH A 10 1110 31 HOH HOH . 
E 3 HOH A 11 1111 19 HOH HOH . 
E 3 HOH A 12 1112 70 HOH HOH . 
E 3 HOH A 13 1113 21 HOH HOH . 
E 3 HOH A 14 1114 30 HOH HOH . 
E 3 HOH A 15 1115 73 HOH HOH . 
E 3 HOH A 16 1116 16 HOH HOH . 
E 3 HOH A 17 1117 71 HOH HOH . 
E 3 HOH A 18 1118 3 HOH HOH . 
F 3 HOH B 1 1101 47 HOH HOH . 
F 3 HOH B 2 1102 2 HOH HOH . 
F 3 HOH B 3 1103 212 HOH HOH . 
F 3 HOH B 4 1104 69 HOH HOH . 
F 3 HOH B 5 1105 208 HOH HOH . 
F 3 HOH B 6 1106 1 HOH HOH . 
F 3 HOH B 7 1107 40 HOH HOH . 
F 3 HOH B 8 1108 46 HOH HOH . 
F 3 HOH B 9 1109 32 HOH HOH . 
F 3 HOH B 10 1110 50 HOH HOH . 
F 3 HOH B 11 1111 42 HOH HOH . 
F 3 HOH B 12 1112 53 HOH HOH . 
F 3 HOH B 13 1113 205 HOH HOH . 
F 3 HOH B 14 1114 5 HOH HOH . 
F 3 HOH B 15 1115 43 HOH HOH . 
F 3 HOH B 16 1116 211 HOH HOH . 
F 3 HOH B 17 1117 64 HOH HOH . 
F 3 HOH B 18 1118 41 HOH HOH . 
F 3 HOH B 19 1119 44 HOH HOH . 
F 3 HOH B 20 1120 48 HOH HOH . 
F 3 HOH B 21 1121 213 HOH HOH . 
F 3 HOH B 22 1122 38 HOH HOH . 
F 3 HOH B 23 1123 2 HOH HOH . 
F 3 HOH B 24 1124 37 HOH HOH . 
F 3 HOH B 25 1125 22 HOH HOH . 
F 3 HOH B 26 1126 72 HOH HOH . 
F 3 HOH B 27 1127 207 HOH HOH . 
F 3 HOH B 28 1128 36 HOH HOH . 
F 3 HOH B 29 1129 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 XHA . . . D 2 19.072 2.299 27.855 1 50.76 ? C4 XHA 1001 B 1 
HETATM 2 C C14 XHA . . . D 2 18.497 5.253 32.996 1 73.63 ? C14 XHA 1001 B 1 
HETATM 3 C C5 XHA . . . D 2 18.069 1.161 27.593 1 48.37 ? C5 XHA 1001 B 1 
HETATM 4 C C6 XHA . . . D 2 16.778 1.938 27.299 1 49.42 ? C6 XHA 1001 B 1 
HETATM 5 C C11 XHA . . . D 2 19.401 6.437 29.499 1 59.93 ? C11 XHA 1001 B 1 
HETATM 6 C C7 XHA . . . D 2 17.301 3.054 26.388 1 50.91 ? C7 XHA 1001 B 1 
HETATM 7 C C8 XHA . . . D 2 16.24 4.105 26.071 1 51.07 ? C8 XHA 1001 B 1 
HETATM 8 C C9 XHA . . . D 2 18.28 4.642 28.059 1 52.1 ? C9 XHA 1001 B 1 
HETATM 9 C C10 XHA . . . D 2 19.557 5.182 28.683 1 60.01 ? C10 XHA 1001 B 1 
HETATM 10 C C12 XHA . . . D 2 18.687 6.275 30.819 1 64.02 ? C12 XHA 1001 B 1 
HETATM 11 C C13 XHA . . . D 2 19.151 5.386 31.781 1 68.12 ? C13 XHA 1001 B 1 
HETATM 12 N N1 XHA . . . D 2 21.752 1.304 25.517 1 49.66 ? N1 XHA 1001 B 1 
HETATM 13 N N2 XHA . . . D 2 18.504 3.495 27.154 1 52.75 ? N2 XHA 1001 B 1 
HETATM 14 C C3 XHA . . . D 2 20.533 1.99 27.488 1 47.68 ? C3 XHA 1001 B 1 
HETATM 15 C C1 XHA . . . D 2 22.15 1.324 24.119 1 50.86 ? C1 XHA 1001 B 1 
HETATM 16 C C2 XHA . . . D 2 20.852 2.148 26.017 1 49.3 ? C2 XHA 1001 B 1 
HETATM 17 O O1 XHA . . . D 2 20.307 3.022 25.344 1 51.16 ? O1 XHA 1001 B 1 
HETATM 18 O O2 XHA . . . D 2 18.464 0.315 26.522 1 46.84 ? O2 XHA 1001 B 1 
HETATM 19 O O3 XHA . . . D 2 15.75 1.188 26.668 1 48.23 ? O3 XHA 1001 B 1 
HETATM 20 O O4 XHA . . . D 2 15.501 4.5 27.22 1 45.66 ? O4 XHA 1001 B 1 
HETATM 21 C C15 XHA . . . D 2 17.37 6.013 33.276 1 75.25 ? C15 XHA 1001 B 1 
HETATM 22 C C16 XHA . . . D 2 16.894 6.911 32.33 1 78.43 ? C16 XHA 1001 B 1 
HETATM 23 C C17 XHA . . . D 2 15.679 7.756 32.63 1 94.12 ? C17 XHA 1001 B 1 
HETATM 24 F F1 XHA . . . D 2 15.191 8.384 31.563 1 100.12 ? F1 XHA 1001 B 1 
HETATM 25 F F2 XHA . . . D 2 14.649 7.064 33.121 1 114.13 ? F2 XHA 1001 B 1 
HETATM 26 F F3 XHA . . . D 2 15.917 8.715 33.533 1 102.53 ? F3 XHA 1001 B 1 
HETATM 27 C C18 XHA . . . D 2 17.556 7.034 31.115 1 68.87 ? C18 XHA 1001 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#