data_5M84
#
_model_server_result.job_id            Dqpy5ftkKxhLtr_QyQrUxw 
_model_server_result.datetime_utc      '2025-02-05 06:57:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m84 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5M84 
#
_exptl.entry_id    5M84 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.84 
_cell.angle_gamma         90 
_cell.entry_id            5M84 
_cell.length_a            46.946 
_cell.length_b            59.763 
_cell.length_c            149.428 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M84 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5M84 
_atom_sites.fract_transf_matrix[1][1]    0.021301 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002181 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006727 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YDZ A 1 301 300 YDZ SSA . 
D 3 GOL A 1 302 1 GOL GOL . 
E 3 GOL A 1 303 2 GOL GOL . 
F 2 YDZ B 1 300 300 YDZ SSA . 
G 4 HOH A 1 401 68 HOH HOH . 
G 4 HOH A 2 402 18 HOH HOH . 
G 4 HOH A 3 403 1 HOH HOH . 
G 4 HOH A 4 404 54 HOH HOH . 
G 4 HOH A 5 405 130 HOH HOH . 
G 4 HOH A 6 406 15 HOH HOH . 
G 4 HOH A 7 407 78 HOH HOH . 
G 4 HOH A 8 408 96 HOH HOH . 
G 4 HOH A 9 409 25 HOH HOH . 
G 4 HOH A 10 410 86 HOH HOH . 
G 4 HOH A 11 411 101 HOH HOH . 
G 4 HOH A 12 412 8 HOH HOH . 
G 4 HOH A 13 413 51 HOH HOH . 
G 4 HOH A 14 414 9 HOH HOH . 
G 4 HOH A 15 415 22 HOH HOH . 
G 4 HOH A 16 416 12 HOH HOH . 
G 4 HOH A 17 417 27 HOH HOH . 
G 4 HOH A 18 418 33 HOH HOH . 
G 4 HOH A 19 419 103 HOH HOH . 
G 4 HOH A 20 420 23 HOH HOH . 
G 4 HOH A 21 421 40 HOH HOH . 
G 4 HOH A 22 422 67 HOH HOH . 
G 4 HOH A 23 423 110 HOH HOH . 
G 4 HOH A 24 424 28 HOH HOH . 
G 4 HOH A 25 425 109 HOH HOH . 
G 4 HOH A 26 426 3 HOH HOH . 
G 4 HOH A 27 427 16 HOH HOH . 
G 4 HOH A 28 428 170 HOH HOH . 
G 4 HOH A 29 429 14 HOH HOH . 
G 4 HOH A 30 430 108 HOH HOH . 
G 4 HOH A 31 431 11 HOH HOH . 
G 4 HOH A 32 432 32 HOH HOH . 
G 4 HOH A 33 433 62 HOH HOH . 
G 4 HOH A 34 434 88 HOH HOH . 
G 4 HOH A 35 435 31 HOH HOH . 
G 4 HOH A 36 436 45 HOH HOH . 
G 4 HOH A 37 437 7 HOH HOH . 
G 4 HOH A 38 438 102 HOH HOH . 
G 4 HOH A 39 439 5 HOH HOH . 
G 4 HOH A 40 440 47 HOH HOH . 
G 4 HOH A 41 441 172 HOH HOH . 
G 4 HOH A 42 442 4 HOH HOH . 
G 4 HOH A 43 443 53 HOH HOH . 
G 4 HOH A 44 444 71 HOH HOH . 
G 4 HOH A 45 445 20 HOH HOH . 
G 4 HOH A 46 446 131 HOH HOH . 
G 4 HOH A 47 447 2 HOH HOH . 
G 4 HOH A 48 448 99 HOH HOH . 
G 4 HOH A 49 449 179 HOH HOH . 
G 4 HOH A 50 450 35 HOH HOH . 
G 4 HOH A 51 451 90 HOH HOH . 
G 4 HOH A 52 452 19 HOH HOH . 
G 4 HOH A 53 453 116 HOH HOH . 
G 4 HOH A 54 454 120 HOH HOH . 
G 4 HOH A 55 455 147 HOH HOH . 
G 4 HOH A 56 456 161 HOH HOH . 
G 4 HOH A 57 457 89 HOH HOH . 
G 4 HOH A 58 458 30 HOH HOH . 
G 4 HOH A 59 459 183 HOH HOH . 
G 4 HOH A 60 460 91 HOH HOH . 
G 4 HOH A 61 461 168 HOH HOH . 
G 4 HOH A 62 462 26 HOH HOH . 
G 4 HOH A 63 463 41 HOH HOH . 
G 4 HOH A 64 464 159 HOH HOH . 
G 4 HOH A 65 465 84 HOH HOH . 
G 4 HOH A 66 466 177 HOH HOH . 
G 4 HOH A 67 467 160 HOH HOH . 
G 4 HOH A 68 468 49 HOH HOH . 
G 4 HOH A 69 469 66 HOH HOH . 
G 4 HOH A 70 470 10 HOH HOH . 
G 4 HOH A 71 471 69 HOH HOH . 
G 4 HOH A 72 472 122 HOH HOH . 
G 4 HOH A 73 473 57 HOH HOH . 
G 4 HOH A 74 474 21 HOH HOH . 
G 4 HOH A 75 475 114 HOH HOH . 
G 4 HOH A 76 476 80 HOH HOH . 
G 4 HOH A 77 477 140 HOH HOH . 
G 4 HOH A 78 478 95 HOH HOH . 
G 4 HOH A 79 479 184 HOH HOH . 
G 4 HOH A 80 480 119 HOH HOH . 
G 4 HOH A 81 481 52 HOH HOH . 
G 4 HOH A 82 482 17 HOH HOH . 
G 4 HOH A 83 483 143 HOH HOH . 
G 4 HOH A 84 484 87 HOH HOH . 
G 4 HOH A 85 485 167 HOH HOH . 
G 4 HOH A 86 486 107 HOH HOH . 
G 4 HOH A 87 487 173 HOH HOH . 
G 4 HOH A 88 488 39 HOH HOH . 
G 4 HOH A 89 489 97 HOH HOH . 
G 4 HOH A 90 490 171 HOH HOH . 
G 4 HOH A 91 491 37 HOH HOH . 
G 4 HOH A 92 492 42 HOH HOH . 
G 4 HOH A 93 493 138 HOH HOH . 
G 4 HOH A 94 494 169 HOH HOH . 
G 4 HOH A 95 495 163 HOH HOH . 
G 4 HOH A 96 496 151 HOH HOH . 
G 4 HOH A 97 497 121 HOH HOH . 
G 4 HOH A 98 498 155 HOH HOH . 
G 4 HOH A 99 499 63 HOH HOH . 
H 4 HOH B 1 401 145 HOH HOH . 
H 4 HOH B 2 402 48 HOH HOH . 
H 4 HOH B 3 403 61 HOH HOH . 
H 4 HOH B 4 404 38 HOH HOH . 
H 4 HOH B 5 405 158 HOH HOH . 
H 4 HOH B 6 406 76 HOH HOH . 
H 4 HOH B 7 407 113 HOH HOH . 
H 4 HOH B 8 408 64 HOH HOH . 
H 4 HOH B 9 409 106 HOH HOH . 
H 4 HOH B 10 410 34 HOH HOH . 
H 4 HOH B 11 411 176 HOH HOH . 
H 4 HOH B 12 412 60 HOH HOH . 
H 4 HOH B 13 413 58 HOH HOH . 
H 4 HOH B 14 414 125 HOH HOH . 
H 4 HOH B 15 415 59 HOH HOH . 
H 4 HOH B 16 416 6 HOH HOH . 
H 4 HOH B 17 417 127 HOH HOH . 
H 4 HOH B 18 418 70 HOH HOH . 
H 4 HOH B 19 419 13 HOH HOH . 
H 4 HOH B 20 420 46 HOH HOH . 
H 4 HOH B 21 421 79 HOH HOH . 
H 4 HOH B 22 422 85 HOH HOH . 
H 4 HOH B 23 423 44 HOH HOH . 
H 4 HOH B 24 424 24 HOH HOH . 
H 4 HOH B 25 425 92 HOH HOH . 
H 4 HOH B 26 426 175 HOH HOH . 
H 4 HOH B 27 427 98 HOH HOH . 
H 4 HOH B 28 428 135 HOH HOH . 
H 4 HOH B 29 429 77 HOH HOH . 
H 4 HOH B 30 430 93 HOH HOH . 
H 4 HOH B 31 431 82 HOH HOH . 
H 4 HOH B 32 432 136 HOH HOH . 
H 4 HOH B 33 433 128 HOH HOH . 
H 4 HOH B 34 434 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -79.841 12.964 64.494 1 63.72 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . D 3 -80.687 13.939 65.067 1 65.74 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . D 3 -78.552 13.599 63.972 1 67.51 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . D 3 -78.747 14.968 63.694 1 61.27 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . D 3 -78.109 12.879 62.705 1 71.03 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . D 3 -77.405 13.77 61.868 1 71.09 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#