data_5M85 # _model_server_result.job_id 6Wt5vys6jASIIccSpAGHkQ _model_server_result.datetime_utc '2024-11-28 06:06:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":707}' # _entry.id 5M85 # _exptl.entry_id 5M85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M85 _cell.length_a 75.101 _cell.length_b 75.101 _cell.length_c 71.21 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 138 A CYS 528 1_555 B CAC CYC . A CYC 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? metalc ? metalc1 A OD1 ASP 69 A ASP 459 1_555 E NA NA . A NA 704 4_8105 ? ? ? ? ? ? ? ? ? ? ? ? 35.065 ? metalc ? metalc2 A OD2 ASP 69 A ASP 459 1_555 E NA NA . A NA 704 4_8105 ? ? ? ? ? ? ? ? ? ? ? ? 34.516 ? metalc ? metalc3 A OD1 ASP 108 A ASP 498 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 A OH TYR 119 A TYR 509 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc5 A OG1 THR 136 A THR 526 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc6 A O ASN 171 A ASN 561 1_555 E NA NA . A NA 704 4_8105 ? ? ? ? ? ? ? ? ? ? ? ? 37.607 ? metalc ? metalc7 B O2A CYC . A CYC 701 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 B O2D CYC . A CYC 701 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc9 F NA NA . A NA 705 1_555 I O HOH . A HOH 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc10 G NA NA . A NA 706 1_555 I O HOH . A HOH 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc11 G NA NA . A NA 706 1_555 I O HOH . A HOH 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 454 n n C C2 TRS sing 455 n n C C3 TRS sing 456 n n C N TRS sing 457 n n C1 O1 TRS sing 458 n n C1 H11 TRS sing 459 n n C1 H12 TRS sing 460 n n C2 O2 TRS sing 461 n n C2 H21 TRS sing 462 n n C2 H22 TRS sing 463 n n C3 O3 TRS sing 464 n n C3 H31 TRS sing 465 n n C3 H32 TRS sing 466 n n N HN1 TRS sing 467 n n N HN2 TRS sing 468 n n N HN3 TRS sing 469 n n O1 HO1 TRS sing 470 n n O2 HO2 TRS sing 471 n n O3 HO3 TRS sing 472 n n # _atom_sites.entry_id 5M85 _atom_sites.fract_transf_matrix[1][1] 0.013315 _atom_sites.fract_transf_matrix[1][2] 0.007688 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYC A 1 701 2 CYC CYC . C 3 3CX A 1 702 1 3CX 3CX . D 4 NA A 1 703 2 NA NA . E 4 NA A 1 704 3 NA NA . F 4 NA A 1 705 4 NA NA . G 4 NA A 1 706 5 NA NA . H 5 TRS A 1 707 1 TRS TRS . I 6 HOH A 1 801 59 HOH HOH . I 6 HOH A 2 802 21 HOH HOH . I 6 HOH A 3 803 64 HOH HOH . I 6 HOH A 4 804 77 HOH HOH . I 6 HOH A 5 805 47 HOH HOH . I 6 HOH A 6 806 50 HOH HOH . I 6 HOH A 7 807 7 HOH HOH . I 6 HOH A 8 808 4 HOH HOH . I 6 HOH A 9 809 9 HOH HOH . I 6 HOH A 10 810 71 HOH HOH . I 6 HOH A 11 811 11 HOH HOH . I 6 HOH A 12 812 34 HOH HOH . I 6 HOH A 13 813 15 HOH HOH . I 6 HOH A 14 814 30 HOH HOH . I 6 HOH A 15 815 61 HOH HOH . I 6 HOH A 16 816 42 HOH HOH . I 6 HOH A 17 817 3 HOH HOH . I 6 HOH A 18 818 63 HOH HOH . I 6 HOH A 19 819 41 HOH HOH . I 6 HOH A 20 820 5 HOH HOH . I 6 HOH A 21 821 58 HOH HOH . I 6 HOH A 22 822 35 HOH HOH . I 6 HOH A 23 823 44 HOH HOH . I 6 HOH A 24 824 12 HOH HOH . I 6 HOH A 25 825 31 HOH HOH . I 6 HOH A 26 826 51 HOH HOH . I 6 HOH A 27 827 55 HOH HOH . I 6 HOH A 28 828 38 HOH HOH . I 6 HOH A 29 829 10 HOH HOH . I 6 HOH A 30 830 60 HOH HOH . I 6 HOH A 31 831 45 HOH HOH . I 6 HOH A 32 832 39 HOH HOH . I 6 HOH A 33 833 49 HOH HOH . I 6 HOH A 34 834 33 HOH HOH . I 6 HOH A 35 835 56 HOH HOH . I 6 HOH A 36 836 8 HOH HOH . I 6 HOH A 37 837 52 HOH HOH . I 6 HOH A 38 838 62 HOH HOH . I 6 HOH A 39 839 14 HOH HOH . I 6 HOH A 40 840 18 HOH HOH . I 6 HOH A 41 841 6 HOH HOH . I 6 HOH A 42 842 40 HOH HOH . I 6 HOH A 43 843 13 HOH HOH . I 6 HOH A 44 844 26 HOH HOH . I 6 HOH A 45 845 36 HOH HOH . I 6 HOH A 46 846 67 HOH HOH . I 6 HOH A 47 847 74 HOH HOH . I 6 HOH A 48 848 46 HOH HOH . I 6 HOH A 49 849 43 HOH HOH . I 6 HOH A 50 850 16 HOH HOH . I 6 HOH A 51 851 29 HOH HOH . I 6 HOH A 52 852 73 HOH HOH . I 6 HOH A 53 853 65 HOH HOH . I 6 HOH A 54 854 25 HOH HOH . I 6 HOH A 55 855 19 HOH HOH . I 6 HOH A 56 856 75 HOH HOH . I 6 HOH A 57 857 48 HOH HOH . I 6 HOH A 58 858 27 HOH HOH . I 6 HOH A 59 859 54 HOH HOH . I 6 HOH A 60 860 20 HOH HOH . I 6 HOH A 61 861 28 HOH HOH . I 6 HOH A 62 862 22 HOH HOH . I 6 HOH A 63 863 24 HOH HOH . I 6 HOH A 64 864 32 HOH HOH . I 6 HOH A 65 865 17 HOH HOH . I 6 HOH A 66 866 57 HOH HOH . I 6 HOH A 67 867 76 HOH HOH . I 6 HOH A 68 868 23 HOH HOH . I 6 HOH A 69 869 72 HOH HOH . I 6 HOH A 70 870 53 HOH HOH . I 6 HOH A 71 871 68 HOH HOH . I 6 HOH A 72 872 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . H 5 14.843 149.072 4.101 0.9 46.03 ? C TRS 707 A 1 HETATM 2 C C1 TRS . . . H 5 14.091 150.23 3.441 0.9 53.21 ? C1 TRS 707 A 1 HETATM 3 C C2 TRS . . . H 5 16.361 149.278 4.049 0.9 56.94 ? C2 TRS 707 A 1 HETATM 4 C C3 TRS . . . H 5 14.171 147.956 3.361 0.9 55.74 ? C3 TRS 707 A 1 HETATM 5 N N TRS . . . H 5 14.702 148.591 5.527 0.9 53.69 ? N TRS 707 A 1 HETATM 6 O O1 TRS . . . H 5 13.192 149.843 2.333 0.9 33.13 ? O1 TRS 707 A 1 HETATM 7 O O2 TRS . . . H 5 16.834 149.867 5.288 0.9 51.13 ? O2 TRS 707 A 1 HETATM 8 O O3 TRS . . . H 5 12.743 148.056 3.251 0.9 34.32 ? O3 TRS 707 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #