data_5M87 # _model_server_result.job_id aixnxDSutrIWU-bGsC9UYg _model_server_result.datetime_utc '2024-11-21 14:18:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5M87 # _exptl.entry_id 5M87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.57 _cell.angle_gamma 90 _cell.entry_id 5M87 _cell.length_a 149.2 _cell.length_b 81.65 _cell.length_c 96.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 5M87 _atom_sites.fract_transf_matrix[1][1] 0.006702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DMU _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 4 _pdbx_nonpoly_scheme.pdb_mon_id DMU _pdbx_nonpoly_scheme.auth_mon_id DMU _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . B 2 -36.721 1.435 -16.059 1 189.48 ? C1 DMU 601 A 1 HETATM 2 C C2 DMU . . . B 2 -36.928 0.895 -14.687 1 185.62 ? C2 DMU 601 A 1 HETATM 3 C C3 DMU . . . B 2 -38.125 0.022 -14.606 1 182.26 ? C3 DMU 601 A 1 HETATM 4 C C4 DMU . . . B 2 -38.068 -1.096 -15.647 1 180.12 ? C4 DMU 601 A 1 HETATM 5 O O5 DMU . . . B 2 -37.909 -0.544 -17.015 1 188.91 ? O5 DMU 601 A 1 HETATM 6 C C6 DMU . . . B 2 -36.73 0.34 -17.126 1 171.87 ? C6 DMU 601 A 1 HETATM 7 O O7 DMU . . . B 2 -38.316 -0.543 -13.273 1 189.27 ? O7 DMU 601 A 1 HETATM 8 O O16 DMU . . . B 2 -36.693 0.942 -18.375 1 164.3 ? O16 DMU 601 A 1 HETATM 9 C C18 DMU . . . B 2 -37.675 0.497 -19.302 1 189.23 ? C18 DMU 601 A 1 HETATM 10 C C19 DMU . . . B 2 -37.129 0.677 -20.763 1 173.13 ? C19 DMU 601 A 1 HETATM 11 C C22 DMU . . . B 2 -38.218 0.257 -21.798 1 177.27 ? C22 DMU 601 A 1 HETATM 12 C C25 DMU . . . B 2 -37.53 -0.258 -23.116 1 188.1 ? C25 DMU 601 A 1 HETATM 13 C C28 DMU . . . B 2 -38.638 -0.612 -24.169 1 180.12 ? C28 DMU 601 A 1 HETATM 14 C C31 DMU . . . B 2 -38.198 -1.861 -25 1 181.75 ? C31 DMU 601 A 1 HETATM 15 C C34 DMU . . . B 2 -39.466 -2.574 -25.558 1 199.3 ? C34 DMU 601 A 1 HETATM 16 C C37 DMU . . . B 2 -39.104 -4.015 -25.997 1 187.98 ? C37 DMU 601 A 1 HETATM 17 C C40 DMU . . . B 2 -40.395 -4.8 -26.276 1 177.58 ? C40 DMU 601 A 1 HETATM 18 C C43 DMU . . . B 2 -40.049 -6.259 -26.598 1 158.25 ? C43 DMU 601 A 1 HETATM 19 O O49 DMU . . . B 2 -35.454 2.12 -16.107 1 184.95 ? O49 DMU 601 A 1 HETATM 20 O O55 DMU . . . B 2 -37.081 2.022 -13.765 1 180.19 ? O55 DMU 601 A 1 HETATM 21 C C57 DMU . . . B 2 -39.329 -1.893 -15.578 1 174.39 ? C57 DMU 601 A 1 HETATM 22 O O61 DMU . . . B 2 -40.425 -1.043 -15.781 1 196.8 ? O61 DMU 601 A 1 HETATM 23 C C5 DMU . . . B 2 -37.328 -2.375 -12.121 1 186.95 ? C5 DMU 601 A 1 HETATM 24 C C7 DMU . . . B 2 -36.574 -2.604 -10.902 1 164.81 ? C7 DMU 601 A 1 HETATM 25 C C8 DMU . . . B 2 -35.244 -1.949 -10.924 1 159.66 ? C8 DMU 601 A 1 HETATM 26 C C9 DMU . . . B 2 -35.377 -0.392 -10.972 1 174.65 ? C9 DMU 601 A 1 HETATM 27 O O1 DMU . . . B 2 -36.716 -0.049 -11.631 1 184.16 ? O1 DMU 601 A 1 HETATM 28 C C10 DMU . . . B 2 -37.118 -0.999 -12.681 1 186.37 ? C10 DMU 601 A 1 HETATM 29 O O2 DMU . . . B 2 -34.516 -2.321 -9.761 1 174.62 ? O2 DMU 601 A 1 HETATM 30 O O3 DMU . . . B 2 -38.766 -2.553 -11.825 1 187.23 ? O3 DMU 601 A 1 HETATM 31 O O4 DMU . . . B 2 -36.391 -4.063 -10.708 1 167.92 ? O4 DMU 601 A 1 HETATM 32 C C11 DMU . . . B 2 -34.324 0.167 -11.728 1 173.16 ? C11 DMU 601 A 1 HETATM 33 O O6 DMU . . . B 2 -34.369 1.558 -11.626 1 174.23 ? O6 DMU 601 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #