data_5M8Q # _model_server_result.job_id WWrJV3-Lzcgx0UezFtZLAA _model_server_result.datetime_utc '2024-11-14 22:02:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":510}' # _entry.id 5M8Q # _exptl.entry_id 5M8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.109 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M8Q _cell.length_a 89.64 _cell.length_b 140.426 _cell.length_c 191.559 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,P,Q,R,S,JA 1 1 B,I,T,U,V,W,X,Y,KA 2 1 C,J,K,L,Z,AA,BA,CA,DA,EA,LA 3 1 D,M,N,O,FA,GA,HA,IA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 S N N ? 9 Y N N ? 9 DA N N ? 9 IA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 4 5 3 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 5 2 1 FUC NAG C1 O1 . O6 HO6 . sing 9 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 6 3 2 MAN NAG C1 O1 . O3 HO3 . sing 11 ? 6 4 3 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 6 5 3 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 961 NAG 2 n E NAG 2 E 2 NAG A 962 NAG 2 n E FUC 3 E 3 FUC A 965 FUC 3 n F NAG 1 F 1 NAG A 3041 NAG 3 n F NAG 2 F 2 NAG A 3042 NAG 4 n G NAG 1 G 1 NAG A 3501 NAG 4 n G NAG 2 G 2 NAG A 3502 NAG 4 n G MAN 3 G 3 MAN A 3503 MAN 4 n G MAN 4 G 4 MAN A 3511 MAN 4 n G MAN 5 G 5 MAN A 3504 MAN 3 n H NAG 1 H 1 NAG A 3851 NAG 3 n H NAG 2 H 2 NAG A 3852 NAG 5 n I NAG 1 I 1 NAG B 1811 NAG 5 n I FUC 2 I 2 FUC B 1812 FUC 5 n J NAG 1 J 1 NAG C 961 NAG 5 n J FUC 2 J 2 FUC C 965 FUC 3 n K NAG 1 K 1 NAG C 3041 NAG 3 n K NAG 2 K 2 NAG C 3042 NAG 6 n L NAG 1 L 1 NAG C 3501 NAG 6 n L NAG 2 L 2 NAG C 3502 NAG 6 n L MAN 3 L 3 MAN C 3503 MAN 6 n L MAN 4 L 4 MAN C 3507 MAN 6 n L MAN 5 L 5 MAN C 3504 MAN 5 n M NAG 1 M 1 NAG D 961 NAG 5 n M FUC 2 M 2 FUC D 965 FUC 5 n N NAG 1 N 1 NAG D 1811 NAG 5 n N FUC 2 N 2 FUC D 1812 FUC 3 n O NAG 1 O 1 NAG D 3041 NAG 3 n O NAG 2 O 2 NAG D 3042 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 30 1_555 A SG CYS 17 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 18 A CYS 42 1_555 A SG CYS 41 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 32 A CYS 56 1_555 A SG CYS 75 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 A SG CYS 77 A CYS 101 1_555 A SG CYS 86 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 89 A CYS 113 1_555 A SG CYS 98 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 A SG CYS 234 A CYS 258 1_555 A SG CYS 237 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf7 A SG CYS 266 A CYS 290 1_555 A SG CYS 279 A CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 6 B CYS 30 1_555 B SG CYS 17 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 18 B CYS 42 1_555 B SG CYS 41 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 32 B CYS 56 1_555 B SG CYS 75 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf11 B SG CYS 77 B CYS 101 1_555 B SG CYS 86 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf12 B SG CYS 89 B CYS 113 1_555 B SG CYS 98 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 B SG CYS 234 B CYS 258 1_555 B SG CYS 237 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 B SG CYS 266 B CYS 290 1_555 B SG CYS 279 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 C SG CYS 6 C CYS 30 1_555 C SG CYS 17 C CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf16 C SG CYS 18 C CYS 42 1_555 C SG CYS 41 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf17 C SG CYS 32 C CYS 56 1_555 C SG CYS 75 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf18 C SG CYS 77 C CYS 101 1_555 C SG CYS 86 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 C SG CYS 89 C CYS 113 1_555 C SG CYS 98 C CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 C SG CYS 234 C CYS 258 1_555 C SG CYS 237 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 C SG CYS 266 C CYS 290 1_555 C SG CYS 279 C CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf22 D SG CYS 6 D CYS 30 1_555 D SG CYS 17 D CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf23 D SG CYS 18 D CYS 42 1_555 D SG CYS 41 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf24 D SG CYS 32 D CYS 56 1_555 D SG CYS 75 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf25 D SG CYS 77 D CYS 101 1_555 D SG CYS 86 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf26 D SG CYS 89 D CYS 113 1_555 D SG CYS 98 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf27 D SG CYS 234 D CYS 258 1_555 D SG CYS 237 D CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf28 D SG CYS 266 D CYS 290 1_555 D SG CYS 279 D CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 72 A ASN 96 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? covale ? covale2 A ND2 ASN 157 A ASN 181 1_555 P C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 280 A ASN 304 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 326 A ASN 350 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 A ND2 ASN 361 A ASN 385 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 72 B ASN 96 1_555 T C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale7 B ND2 ASN 157 B ASN 181 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 B ND2 ASN 361 B ASN 385 1_555 V C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale9 C ND2 ASN 72 C ASN 96 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 C ND2 ASN 280 C ASN 304 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 C ND2 ASN 326 C ASN 350 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale12 C ND2 ASN 361 C ASN 385 1_555 AA C1 NAG . C NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale13 D ND2 ASN 72 D ASN 96 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale14 D ND2 ASN 157 D ASN 181 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 D ND2 ASN 280 D ASN 304 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale16 D ND2 ASN 361 D ASN 385 1_555 FA C1 NAG . D NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale18 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale19 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale20 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale21 G O4 NAG . G NAG 2 1_555 G C1 MAN . G MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale22 G O3 MAN . G MAN 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale23 G O6 MAN . G MAN 3 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale24 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale25 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale26 J O6 NAG . J NAG 1 1_555 J C1 FUC . J FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale27 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale28 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale29 L O3 NAG . L NAG 2 1_555 L C1 MAN . L MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale30 L O3 MAN . L MAN 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale31 L O6 MAN . L MAN 3 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale32 M O6 NAG . M NAG 1 1_555 M C1 FUC . M FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale33 N O6 NAG . N NAG 1 1_555 N C1 FUC . N FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale34 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A NE2 HIS 168 A HIS 192 1_555 R ZN ZN . A ZN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A NE2 HIS 191 A HIS 215 1_555 R ZN ZN . A ZN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A NE2 HIS 200 A HIS 224 1_555 R ZN ZN . A ZN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 A NE2 HIS 353 A HIS 377 1_555 Q ZN ZN . A ZN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc5 A NE2 HIS 380 A HIS 404 1_555 Q ZN ZN . A ZN 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 Q ZN ZN . A ZN 514 1_555 JA O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 R ZN ZN . A ZN 515 1_555 JA O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc8 B NE2 HIS 168 B HIS 192 1_555 W ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc9 B NE2 HIS 191 B HIS 215 1_555 W ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc10 B NE2 HIS 200 B HIS 224 1_555 W ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc11 B NE2 HIS 353 B HIS 377 1_555 X ZN ZN . B ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc12 B NE2 HIS 357 B HIS 381 1_555 X ZN ZN . B ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc13 B NE2 HIS 380 B HIS 404 1_555 X ZN ZN . B ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc14 W ZN ZN . B ZN 506 1_555 KA O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc15 X ZN ZN . B ZN 507 1_555 KA O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc16 C OE1 GLU 42 C GLU 66 1_555 EA ZN ZN . C ZN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc17 C OE2 GLU 42 C GLU 66 1_555 EA ZN ZN . C ZN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc18 C ND1 HIS 76 C HIS 100 1_555 EA ZN ZN . C ZN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc19 C NE2 HIS 168 C HIS 192 1_555 CA ZN ZN . C ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc20 C NE2 HIS 191 C HIS 215 1_555 CA ZN ZN . C ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc21 C NE2 HIS 200 C HIS 224 1_555 CA ZN ZN . C ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc22 C NE2 HIS 353 C HIS 377 1_555 BA ZN ZN . C ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc23 C NE2 HIS 357 C HIS 381 1_555 BA ZN ZN . C ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc24 C NE2 HIS 380 C HIS 404 1_555 BA ZN ZN . C ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc25 BA ZN ZN . C ZN 512 1_555 LA O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc26 CA ZN ZN . C ZN 513 1_555 LA O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc27 EA ZN ZN . C ZN 515 1_555 D NH2 ARG 40 D ARG 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc28 EA ZN ZN . C ZN 515 1_555 D OE2 GLU 42 D GLU 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc29 EA ZN ZN . C ZN 515 1_555 D ND1 HIS 76 D HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc30 D NE2 HIS 168 D HIS 192 1_555 HA ZN ZN . D ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc31 D NE2 HIS 191 D HIS 215 1_555 HA ZN ZN . D ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc32 D NE2 HIS 200 D HIS 224 1_555 HA ZN ZN . D ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc33 D NE2 HIS 353 D HIS 377 1_555 GA ZN ZN . D ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc34 D NE2 HIS 357 D HIS 381 1_555 GA ZN ZN . D ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc35 D NE2 HIS 380 D HIS 404 1_555 GA ZN ZN . D ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc36 GA ZN ZN . D ZN 508 1_555 MA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc37 HA ZN ZN . D ZN 509 1_555 MA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C6 H6 O4' _chem_comp.formula_weight 142.109 _chem_comp.id KOJ _chem_comp.mon_nstd_flag . _chem_comp.name 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KOJ doub 196 n y C1 O5 KOJ sing 197 n y C1 H1 KOJ sing 198 n n C2 C3 KOJ sing 199 n y C2 O2 KOJ sing 200 n n C3 C4 KOJ sing 201 n y C3 O3 KOJ doub 202 n n C4 C5 KOJ doub 203 n y C4 H4 KOJ sing 204 n n C5 C6 KOJ sing 205 n n C5 O5 KOJ sing 206 n y C6 O6 KOJ sing 207 n n C6 H6C1 KOJ sing 208 n n C6 H6C2 KOJ sing 209 n n O2 H2 KOJ sing 210 n n O6 H6 KOJ sing 211 n n # _atom_sites.entry_id 5M8Q _atom_sites.fract_transf_matrix[1][1] 0.011156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 7 NAG A 1 504 1811 NAG NAG . Q 8 ZN A 1 514 1 ZN ZN . R 8 ZN A 1 515 2 ZN ZN . S 9 KOJ A 1 516 1 KOJ KOJ . T 7 NAG B 1 501 961 NAG NAG . U 7 NAG B 1 504 3041 NAG NAG . V 7 NAG B 1 505 3851 NAG NAG . W 8 ZN B 1 506 3 ZN ZN . X 8 ZN B 1 507 4 ZN ZN . Y 9 KOJ B 1 508 2 KOJ KOJ . Z 7 NAG C 1 503 1811 NAG NAG . AA 7 NAG C 1 511 3851 NAG NAG . BA 8 ZN C 1 512 7 ZN ZN . CA 8 ZN C 1 513 8 ZN ZN . DA 9 KOJ C 1 514 3 KOJ KOJ . EA 8 ZN C 1 515 9 ZN ZN . FA 7 NAG D 1 507 3851 NAG NAG . GA 8 ZN D 1 508 5 ZN ZN . HA 8 ZN D 1 509 6 ZN ZN . IA 9 KOJ D 1 510 4 KOJ KOJ . JA 10 HOH A 1 601 1 HOH HOH . KA 10 HOH B 1 601 5 HOH HOH . LA 10 HOH C 1 601 3 HOH HOH . MA 10 HOH D 1 601 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KOJ . . . IA 9 31.631 -2.113 25.258 1 50.54 ? C1 KOJ 510 D 1 HETATM 2 C C2 KOJ . . . IA 9 32.054 -1.675 24.079 1 51.36 ? C2 KOJ 510 D 1 HETATM 3 C C3 KOJ . . . IA 9 32.497 -2.643 23.076 1 52.91 ? C3 KOJ 510 D 1 HETATM 4 C C4 KOJ . . . IA 9 32.465 -4.094 23.343 1 46.16 ? C4 KOJ 510 D 1 HETATM 5 C C5 KOJ . . . IA 9 32.038 -4.535 24.501 1 48.48 ? C5 KOJ 510 D 1 HETATM 6 C C6 KOJ . . . IA 9 31.998 -6.044 24.767 1 49.07 ? C6 KOJ 510 D 1 HETATM 7 O O2 KOJ . . . IA 9 32.106 -0.312 23.719 1 45.82 ? O2 KOJ 510 D 1 HETATM 8 O O3 KOJ . . . IA 9 32.89 -2.208 22.041 1 56.11 ? O3 KOJ 510 D 1 HETATM 9 O O5 KOJ . . . IA 9 31.597 -3.565 25.518 1 53.63 ? O5 KOJ 510 D 1 HETATM 10 O O6 KOJ . . . IA 9 30.718 -6.354 25.267 1 56.78 ? O6 KOJ 510 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #