data_5M9B # _model_server_result.job_id PVxaLUF4l_5jHnVejcJM-Q _model_server_result.datetime_utc '2024-11-24 03:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":807}' # _entry.id 5M9B # _exptl.entry_id 5M9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M9B _cell.length_a 87.89 _cell.length_b 158.18 _cell.length_c 77.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 487 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 484 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 494 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 491 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.077 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 5M9B _atom_sites.fract_transf_matrix[1][1] 0.011378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 801 1 ACY ACY . C 2 ACY A 1 802 2 ACY ACY . D 2 ACY A 1 803 3 ACY ACY . E 2 ACY A 1 804 4 ACY ACY . F 2 ACY A 1 805 5 ACY ACY . G 2 ACY A 1 806 6 ACY ACY . H 3 EDO A 1 807 1 EDO EDO . I 3 EDO A 1 808 2 EDO EDO . J 3 EDO A 1 809 3 EDO EDO . K 3 EDO A 1 810 4 EDO EDO . L 3 EDO A 1 811 5 EDO EDO . M 4 HOH A 1 901 258 HOH HOH . M 4 HOH A 2 902 200 HOH HOH . M 4 HOH A 3 903 237 HOH HOH . M 4 HOH A 4 904 235 HOH HOH . M 4 HOH A 5 905 12 HOH HOH . M 4 HOH A 6 906 123 HOH HOH . M 4 HOH A 7 907 210 HOH HOH . M 4 HOH A 8 908 96 HOH HOH . M 4 HOH A 9 909 42 HOH HOH . M 4 HOH A 10 910 107 HOH HOH . M 4 HOH A 11 911 151 HOH HOH . M 4 HOH A 12 912 180 HOH HOH . M 4 HOH A 13 913 256 HOH HOH . M 4 HOH A 14 914 176 HOH HOH . M 4 HOH A 15 915 51 HOH HOH . M 4 HOH A 16 916 79 HOH HOH . M 4 HOH A 17 917 103 HOH HOH . M 4 HOH A 18 918 128 HOH HOH . M 4 HOH A 19 919 197 HOH HOH . M 4 HOH A 20 920 155 HOH HOH . M 4 HOH A 21 921 54 HOH HOH . M 4 HOH A 22 922 227 HOH HOH . M 4 HOH A 23 923 164 HOH HOH . M 4 HOH A 24 924 8 HOH HOH . M 4 HOH A 25 925 132 HOH HOH . M 4 HOH A 26 926 70 HOH HOH . M 4 HOH A 27 927 245 HOH HOH . M 4 HOH A 28 928 126 HOH HOH . M 4 HOH A 29 929 62 HOH HOH . M 4 HOH A 30 930 116 HOH HOH . M 4 HOH A 31 931 223 HOH HOH . M 4 HOH A 32 932 63 HOH HOH . M 4 HOH A 33 933 69 HOH HOH . M 4 HOH A 34 934 49 HOH HOH . M 4 HOH A 35 935 4 HOH HOH . M 4 HOH A 36 936 195 HOH HOH . M 4 HOH A 37 937 255 HOH HOH . M 4 HOH A 38 938 248 HOH HOH . M 4 HOH A 39 939 39 HOH HOH . M 4 HOH A 40 940 194 HOH HOH . M 4 HOH A 41 941 260 HOH HOH . M 4 HOH A 42 942 189 HOH HOH . M 4 HOH A 43 943 27 HOH HOH . M 4 HOH A 44 944 92 HOH HOH . M 4 HOH A 45 945 85 HOH HOH . M 4 HOH A 46 946 209 HOH HOH . M 4 HOH A 47 947 238 HOH HOH . M 4 HOH A 48 948 82 HOH HOH . M 4 HOH A 49 949 242 HOH HOH . M 4 HOH A 50 950 11 HOH HOH . M 4 HOH A 51 951 19 HOH HOH . M 4 HOH A 52 952 254 HOH HOH . M 4 HOH A 53 953 234 HOH HOH . M 4 HOH A 54 954 55 HOH HOH . M 4 HOH A 55 955 100 HOH HOH . M 4 HOH A 56 956 215 HOH HOH . M 4 HOH A 57 957 137 HOH HOH . M 4 HOH A 58 958 67 HOH HOH . M 4 HOH A 59 959 16 HOH HOH . M 4 HOH A 60 960 72 HOH HOH . M 4 HOH A 61 961 243 HOH HOH . M 4 HOH A 62 962 7 HOH HOH . M 4 HOH A 63 963 44 HOH HOH . M 4 HOH A 64 964 101 HOH HOH . M 4 HOH A 65 965 77 HOH HOH . M 4 HOH A 66 966 212 HOH HOH . M 4 HOH A 67 967 78 HOH HOH . M 4 HOH A 68 968 211 HOH HOH . M 4 HOH A 69 969 74 HOH HOH . M 4 HOH A 70 970 229 HOH HOH . M 4 HOH A 71 971 131 HOH HOH . M 4 HOH A 72 972 156 HOH HOH . M 4 HOH A 73 973 141 HOH HOH . M 4 HOH A 74 974 110 HOH HOH . M 4 HOH A 75 975 17 HOH HOH . M 4 HOH A 76 976 158 HOH HOH . M 4 HOH A 77 977 122 HOH HOH . M 4 HOH A 78 978 52 HOH HOH . M 4 HOH A 79 979 105 HOH HOH . M 4 HOH A 80 980 34 HOH HOH . M 4 HOH A 81 981 38 HOH HOH . M 4 HOH A 82 982 157 HOH HOH . M 4 HOH A 83 983 230 HOH HOH . M 4 HOH A 84 984 66 HOH HOH . M 4 HOH A 85 985 1 HOH HOH . M 4 HOH A 86 986 24 HOH HOH . M 4 HOH A 87 987 9 HOH HOH . M 4 HOH A 88 988 25 HOH HOH . M 4 HOH A 89 989 97 HOH HOH . M 4 HOH A 90 990 58 HOH HOH . M 4 HOH A 91 991 18 HOH HOH . M 4 HOH A 92 992 64 HOH HOH . M 4 HOH A 93 993 118 HOH HOH . M 4 HOH A 94 994 219 HOH HOH . M 4 HOH A 95 995 168 HOH HOH . M 4 HOH A 96 996 239 HOH HOH . M 4 HOH A 97 997 10 HOH HOH . M 4 HOH A 98 998 241 HOH HOH . M 4 HOH A 99 999 76 HOH HOH . M 4 HOH A 100 1000 162 HOH HOH . M 4 HOH A 101 1001 81 HOH HOH . M 4 HOH A 102 1002 48 HOH HOH . M 4 HOH A 103 1003 29 HOH HOH . M 4 HOH A 104 1004 50 HOH HOH . M 4 HOH A 105 1005 198 HOH HOH . M 4 HOH A 106 1006 117 HOH HOH . M 4 HOH A 107 1007 148 HOH HOH . M 4 HOH A 108 1008 114 HOH HOH . M 4 HOH A 109 1009 106 HOH HOH . M 4 HOH A 110 1010 99 HOH HOH . M 4 HOH A 111 1011 91 HOH HOH . M 4 HOH A 112 1012 125 HOH HOH . M 4 HOH A 113 1013 65 HOH HOH . M 4 HOH A 114 1014 88 HOH HOH . M 4 HOH A 115 1015 187 HOH HOH . M 4 HOH A 116 1016 206 HOH HOH . M 4 HOH A 117 1017 2 HOH HOH . M 4 HOH A 118 1018 21 HOH HOH . M 4 HOH A 119 1019 113 HOH HOH . M 4 HOH A 120 1020 224 HOH HOH . M 4 HOH A 121 1021 87 HOH HOH . M 4 HOH A 122 1022 75 HOH HOH . M 4 HOH A 123 1023 68 HOH HOH . M 4 HOH A 124 1024 150 HOH HOH . M 4 HOH A 125 1025 59 HOH HOH . M 4 HOH A 126 1026 232 HOH HOH . M 4 HOH A 127 1027 45 HOH HOH . M 4 HOH A 128 1028 171 HOH HOH . M 4 HOH A 129 1029 47 HOH HOH . M 4 HOH A 130 1030 89 HOH HOH . M 4 HOH A 131 1031 178 HOH HOH . M 4 HOH A 132 1032 37 HOH HOH . M 4 HOH A 133 1033 181 HOH HOH . M 4 HOH A 134 1034 225 HOH HOH . M 4 HOH A 135 1035 163 HOH HOH . M 4 HOH A 136 1036 93 HOH HOH . M 4 HOH A 137 1037 108 HOH HOH . M 4 HOH A 138 1038 124 HOH HOH . M 4 HOH A 139 1039 172 HOH HOH . M 4 HOH A 140 1040 136 HOH HOH . M 4 HOH A 141 1041 15 HOH HOH . M 4 HOH A 142 1042 252 HOH HOH . M 4 HOH A 143 1043 133 HOH HOH . M 4 HOH A 144 1044 22 HOH HOH . M 4 HOH A 145 1045 217 HOH HOH . M 4 HOH A 146 1046 3 HOH HOH . M 4 HOH A 147 1047 6 HOH HOH . M 4 HOH A 148 1048 35 HOH HOH . M 4 HOH A 149 1049 166 HOH HOH . M 4 HOH A 150 1050 143 HOH HOH . M 4 HOH A 151 1051 250 HOH HOH . M 4 HOH A 152 1052 138 HOH HOH . M 4 HOH A 153 1053 102 HOH HOH . M 4 HOH A 154 1054 41 HOH HOH . M 4 HOH A 155 1055 221 HOH HOH . M 4 HOH A 156 1056 13 HOH HOH . M 4 HOH A 157 1057 40 HOH HOH . M 4 HOH A 158 1058 246 HOH HOH . M 4 HOH A 159 1059 214 HOH HOH . M 4 HOH A 160 1060 32 HOH HOH . M 4 HOH A 161 1061 115 HOH HOH . M 4 HOH A 162 1062 31 HOH HOH . M 4 HOH A 163 1063 5 HOH HOH . M 4 HOH A 164 1064 139 HOH HOH . M 4 HOH A 165 1065 135 HOH HOH . M 4 HOH A 166 1066 56 HOH HOH . M 4 HOH A 167 1067 14 HOH HOH . M 4 HOH A 168 1068 36 HOH HOH . M 4 HOH A 169 1069 83 HOH HOH . M 4 HOH A 170 1070 205 HOH HOH . M 4 HOH A 171 1071 142 HOH HOH . M 4 HOH A 172 1072 216 HOH HOH . M 4 HOH A 173 1073 130 HOH HOH . M 4 HOH A 174 1074 199 HOH HOH . M 4 HOH A 175 1075 71 HOH HOH . M 4 HOH A 176 1076 61 HOH HOH . M 4 HOH A 177 1077 53 HOH HOH . M 4 HOH A 178 1078 182 HOH HOH . M 4 HOH A 179 1079 207 HOH HOH . M 4 HOH A 180 1080 129 HOH HOH . M 4 HOH A 181 1081 33 HOH HOH . M 4 HOH A 182 1082 147 HOH HOH . M 4 HOH A 183 1083 86 HOH HOH . M 4 HOH A 184 1084 57 HOH HOH . M 4 HOH A 185 1085 233 HOH HOH . M 4 HOH A 186 1086 90 HOH HOH . M 4 HOH A 187 1087 184 HOH HOH . M 4 HOH A 188 1088 257 HOH HOH . M 4 HOH A 189 1089 73 HOH HOH . M 4 HOH A 190 1090 202 HOH HOH . M 4 HOH A 191 1091 169 HOH HOH . M 4 HOH A 192 1092 109 HOH HOH . M 4 HOH A 193 1093 196 HOH HOH . M 4 HOH A 194 1094 112 HOH HOH . M 4 HOH A 195 1095 186 HOH HOH . M 4 HOH A 196 1096 98 HOH HOH . M 4 HOH A 197 1097 145 HOH HOH . M 4 HOH A 198 1098 20 HOH HOH . M 4 HOH A 199 1099 140 HOH HOH . M 4 HOH A 200 1100 240 HOH HOH . M 4 HOH A 201 1101 104 HOH HOH . M 4 HOH A 202 1102 28 HOH HOH . M 4 HOH A 203 1103 43 HOH HOH . M 4 HOH A 204 1104 208 HOH HOH . M 4 HOH A 205 1105 119 HOH HOH . M 4 HOH A 206 1106 84 HOH HOH . M 4 HOH A 207 1107 220 HOH HOH . M 4 HOH A 208 1108 154 HOH HOH . M 4 HOH A 209 1109 30 HOH HOH . M 4 HOH A 210 1110 160 HOH HOH . M 4 HOH A 211 1111 111 HOH HOH . M 4 HOH A 212 1112 170 HOH HOH . M 4 HOH A 213 1113 134 HOH HOH . M 4 HOH A 214 1114 183 HOH HOH . M 4 HOH A 215 1115 167 HOH HOH . M 4 HOH A 216 1116 174 HOH HOH . M 4 HOH A 217 1117 146 HOH HOH . M 4 HOH A 218 1118 144 HOH HOH . M 4 HOH A 219 1119 46 HOH HOH . M 4 HOH A 220 1120 231 HOH HOH . M 4 HOH A 221 1121 95 HOH HOH . M 4 HOH A 222 1122 23 HOH HOH . M 4 HOH A 223 1123 60 HOH HOH . M 4 HOH A 224 1124 127 HOH HOH . M 4 HOH A 225 1125 193 HOH HOH . M 4 HOH A 226 1126 249 HOH HOH . M 4 HOH A 227 1127 222 HOH HOH . M 4 HOH A 228 1128 218 HOH HOH . M 4 HOH A 229 1129 191 HOH HOH . M 4 HOH A 230 1130 213 HOH HOH . M 4 HOH A 231 1131 121 HOH HOH . M 4 HOH A 232 1132 253 HOH HOH . M 4 HOH A 233 1133 152 HOH HOH . M 4 HOH A 234 1134 203 HOH HOH . M 4 HOH A 235 1135 251 HOH HOH . M 4 HOH A 236 1136 201 HOH HOH . M 4 HOH A 237 1137 179 HOH HOH . M 4 HOH A 238 1138 173 HOH HOH . M 4 HOH A 239 1139 244 HOH HOH . M 4 HOH A 240 1140 165 HOH HOH . M 4 HOH A 241 1141 26 HOH HOH . M 4 HOH A 242 1142 236 HOH HOH . M 4 HOH A 243 1143 94 HOH HOH . M 4 HOH A 244 1144 161 HOH HOH . M 4 HOH A 245 1145 226 HOH HOH . M 4 HOH A 246 1146 153 HOH HOH . M 4 HOH A 247 1147 185 HOH HOH . M 4 HOH A 248 1148 188 HOH HOH . M 4 HOH A 249 1149 159 HOH HOH . M 4 HOH A 250 1150 247 HOH HOH . M 4 HOH A 251 1151 175 HOH HOH . M 4 HOH A 252 1152 149 HOH HOH . M 4 HOH A 253 1153 228 HOH HOH . M 4 HOH A 254 1154 192 HOH HOH . M 4 HOH A 255 1155 177 HOH HOH . M 4 HOH A 256 1156 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 77.011 36.633 69.476 1 54.61 ? C1 EDO 807 A 1 HETATM 2 O O1 EDO . . . H 3 75.916 35.747 69.719 1 48.84 ? O1 EDO 807 A 1 HETATM 3 C C2 EDO . . . H 3 76.509 38.069 69.487 1 47.83 ? C2 EDO 807 A 1 HETATM 4 O O2 EDO . . . H 3 76.279 38.515 70.821 1 57 ? O2 EDO 807 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #