data_5M9G # _model_server_result.job_id UWWlRnzaY1paf0yVIegPjw _model_server_result.datetime_utc '2025-07-26 00:35:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5M9G # _exptl.entry_id 5M9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M9G _cell.length_a 82.904 _cell.length_b 118.755 _cell.length_c 37.053 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 26 1_555 A SG CYS 82 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 40 A CYS 39 1_555 A SG CYS 93 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 58 A CYS 57 1_555 A SG CYS 108 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 306 n n O11 C1 TAR sing 307 n n O11 HO1 TAR sing 308 n n C1 C2 TAR sing 309 n n C2 O2 TAR sing 310 n n C2 C3 TAR sing 311 n n C2 H2 TAR sing 312 n n O2 HO2 TAR sing 313 n n C3 O3 TAR sing 314 n n C3 C4 TAR sing 315 n n C3 H3 TAR sing 316 n n O3 HO3 TAR sing 317 n n C4 O4 TAR doub 318 n n C4 O41 TAR sing 319 n n O41 HO4 TAR sing 320 n n # _atom_sites.entry_id 5M9G _atom_sites.fract_transf_matrix[1][1] 0.012062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAR A 1 201 1 TAR TAR . C 3 PEG A 1 202 1 PEG PEG . D 4 HOH A 1 301 30 HOH HOH . D 4 HOH A 2 302 20 HOH HOH . D 4 HOH A 3 303 4 HOH HOH . D 4 HOH A 4 304 28 HOH HOH . D 4 HOH A 5 305 13 HOH HOH . D 4 HOH A 6 306 14 HOH HOH . D 4 HOH A 7 307 3 HOH HOH . D 4 HOH A 8 308 12 HOH HOH . D 4 HOH A 9 309 7 HOH HOH . D 4 HOH A 10 310 27 HOH HOH . D 4 HOH A 11 311 15 HOH HOH . D 4 HOH A 12 312 21 HOH HOH . D 4 HOH A 13 313 10 HOH HOH . D 4 HOH A 14 314 18 HOH HOH . D 4 HOH A 15 315 32 HOH HOH . D 4 HOH A 16 316 29 HOH HOH . D 4 HOH A 17 317 6 HOH HOH . D 4 HOH A 18 318 5 HOH HOH . D 4 HOH A 19 319 8 HOH HOH . D 4 HOH A 20 320 25 HOH HOH . D 4 HOH A 21 321 9 HOH HOH . D 4 HOH A 22 322 31 HOH HOH . D 4 HOH A 23 323 1 HOH HOH . D 4 HOH A 24 324 24 HOH HOH . D 4 HOH A 25 325 11 HOH HOH . D 4 HOH A 26 326 16 HOH HOH . D 4 HOH A 27 327 22 HOH HOH . D 4 HOH A 28 328 19 HOH HOH . D 4 HOH A 29 329 2 HOH HOH . D 4 HOH A 30 330 17 HOH HOH . D 4 HOH A 31 331 23 HOH HOH . D 4 HOH A 32 332 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . B 2 -38.534 -19.62 15.615 1 53.69 ? O1 TAR 201 A 1 HETATM 2 O O11 TAR . . . B 2 -37.771 -21.635 15.772 1 48.48 ? O11 TAR 201 A 1 HETATM 3 C C1 TAR . . . B 2 -38.448 -20.774 15.177 1 52.87 ? C1 TAR 201 A 1 HETATM 4 C C2 TAR . . . B 2 -39.182 -21.116 13.912 1 55.25 ? C2 TAR 201 A 1 HETATM 5 O O2 TAR . . . B 2 -38.22 -21.797 13.121 1 60.86 ? O2 TAR 201 A 1 HETATM 6 C C3 TAR . . . B 2 -40.448 -21.974 14.163 1 58.95 ? C3 TAR 201 A 1 HETATM 7 O O3 TAR . . . B 2 -40.257 -22.789 15.326 1 65.26 ? O3 TAR 201 A 1 HETATM 8 C C4 TAR . . . B 2 -40.863 -22.904 13.034 1 56.19 ? C4 TAR 201 A 1 HETATM 9 O O4 TAR . . . B 2 -39.979 -23.47 12.349 1 44.88 ? O4 TAR 201 A 1 HETATM 10 O O41 TAR . . . B 2 -42.087 -23.092 12.809 1 60.95 ? O41 TAR 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #