data_5M9N # _model_server_result.job_id nr-XXIhL2ISjPOqXyAX6ew _model_server_result.datetime_utc '2024-11-25 19:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 5M9N # _exptl.entry_id 5M9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 64.94 _cell.angle_beta 88.85 _cell.angle_gamma 67.67 _cell.entry_id 5M9N _cell.length_a 42.91 _cell.length_b 52.962 _cell.length_c 59.619 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 530 1_555 A SG CYS 132 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? disulf ? disulf2 B SG CYS 72 B CYS 530 1_555 B SG CYS 132 B CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? covale ? covale1 C C GLY 7 C GLY 7 1_555 C N 2MR 8 C 2MR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 C C 2MR 8 C 2MR 8 1_555 C N GLY 9 C GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 C C GLY 9 C GLY 9 1_555 C N 2MR 10 C 2MR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 114 n n C1 C2 EDO sing 115 n n C1 H11 EDO sing 116 n n C1 H12 EDO sing 117 n n O1 HO1 EDO sing 118 n n C2 O2 EDO sing 119 n n C2 H21 EDO sing 120 n n C2 H22 EDO sing 121 n n O2 HO2 EDO sing 122 n n # _atom_sites.entry_id 5M9N _atom_sites.fract_transf_matrix[1][1] 0.023305 _atom_sites.fract_transf_matrix[1][2] -0.009573 _atom_sites.fract_transf_matrix[1][3] 0.004298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020412 _atom_sites.fract_transf_matrix[2][3] -0.010278 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 EDO A 1 701 2 EDO EDO . E 3 EDO A 1 702 3 EDO EDO . F 4 2MR B 1 701 8 2MR 2MR . G 3 EDO B 1 702 1 EDO EDO . H 5 HOH A 1 801 22 HOH HOH . H 5 HOH A 2 802 46 HOH HOH . H 5 HOH A 3 803 19 HOH HOH . H 5 HOH A 4 804 20 HOH HOH . H 5 HOH A 5 805 29 HOH HOH . H 5 HOH A 6 806 71 HOH HOH . H 5 HOH A 7 807 1 HOH HOH . H 5 HOH A 8 808 53 HOH HOH . H 5 HOH A 9 809 17 HOH HOH . H 5 HOH A 10 810 32 HOH HOH . H 5 HOH A 11 811 9 HOH HOH . H 5 HOH A 12 812 4 HOH HOH . H 5 HOH A 13 813 70 HOH HOH . H 5 HOH A 14 814 74 HOH HOH . H 5 HOH A 15 815 13 HOH HOH . H 5 HOH A 16 816 24 HOH HOH . H 5 HOH A 17 817 38 HOH HOH . H 5 HOH A 18 818 54 HOH HOH . H 5 HOH A 19 819 56 HOH HOH . H 5 HOH A 20 820 6 HOH HOH . H 5 HOH A 21 821 5 HOH HOH . H 5 HOH A 22 822 35 HOH HOH . H 5 HOH A 23 823 72 HOH HOH . H 5 HOH A 24 824 40 HOH HOH . H 5 HOH A 25 825 52 HOH HOH . H 5 HOH A 26 826 8 HOH HOH . H 5 HOH A 27 827 76 HOH HOH . H 5 HOH A 28 828 64 HOH HOH . H 5 HOH A 29 829 75 HOH HOH . H 5 HOH A 30 830 26 HOH HOH . H 5 HOH A 31 831 28 HOH HOH . H 5 HOH A 32 832 68 HOH HOH . H 5 HOH A 33 833 66 HOH HOH . H 5 HOH A 34 834 65 HOH HOH . H 5 HOH A 35 835 16 HOH HOH . H 5 HOH A 36 836 57 HOH HOH . H 5 HOH A 37 837 44 HOH HOH . H 5 HOH A 38 838 18 HOH HOH . H 5 HOH A 39 839 61 HOH HOH . H 5 HOH A 40 840 25 HOH HOH . H 5 HOH A 41 841 31 HOH HOH . H 5 HOH A 42 842 39 HOH HOH . H 5 HOH A 43 843 43 HOH HOH . H 5 HOH A 44 844 33 HOH HOH . H 5 HOH A 45 845 73 HOH HOH . H 5 HOH A 46 846 30 HOH HOH . H 5 HOH A 47 847 37 HOH HOH . I 5 HOH B 1 801 59 HOH HOH . I 5 HOH B 2 802 14 HOH HOH . I 5 HOH B 3 803 41 HOH HOH . I 5 HOH B 4 804 2 HOH HOH . I 5 HOH B 5 805 27 HOH HOH . I 5 HOH B 6 806 7 HOH HOH . I 5 HOH B 7 807 23 HOH HOH . I 5 HOH B 8 808 55 HOH HOH . I 5 HOH B 9 809 49 HOH HOH . I 5 HOH B 10 810 67 HOH HOH . I 5 HOH B 11 811 45 HOH HOH . I 5 HOH B 12 812 34 HOH HOH . I 5 HOH B 13 813 47 HOH HOH . I 5 HOH B 14 814 15 HOH HOH . I 5 HOH B 15 815 77 HOH HOH . I 5 HOH B 16 816 3 HOH HOH . I 5 HOH B 17 817 48 HOH HOH . I 5 HOH B 18 818 36 HOH HOH . I 5 HOH B 19 819 62 HOH HOH . I 5 HOH B 20 820 63 HOH HOH . I 5 HOH B 21 821 12 HOH HOH . I 5 HOH B 22 822 60 HOH HOH . I 5 HOH B 23 823 58 HOH HOH . I 5 HOH B 24 824 10 HOH HOH . I 5 HOH B 25 825 21 HOH HOH . I 5 HOH B 26 826 50 HOH HOH . I 5 HOH B 27 827 42 HOH HOH . I 5 HOH B 28 828 78 HOH HOH . I 5 HOH B 29 829 11 HOH HOH . I 5 HOH B 30 830 51 HOH HOH . I 5 HOH B 31 831 69 HOH HOH . I 5 HOH B 32 832 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 59.625 46.778 18.814 1 64.36 ? C1 EDO 701 A 1 HETATM 2 O O1 EDO . . . D 3 59.28 48.029 18.213 1 66.09 ? O1 EDO 701 A 1 HETATM 3 C C2 EDO . . . D 3 61.049 46.392 18.452 1 64.57 ? C2 EDO 701 A 1 HETATM 4 O O2 EDO . . . D 3 61.239 46.566 17.048 1 65.94 ? O2 EDO 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #