data_5M9T
#
_model_server_result.job_id            woWe4ZOLy7hSnXjmTwGvrA 
_model_server_result.datetime_utc      '2024-10-19 13:21:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m9t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5M9T 
#
_exptl.entry_id    5M9T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.84 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BORATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5M9T 
_cell.length_a            81.426 
_cell.length_b            81.426 
_cell.length_c            85.985 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M9T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 26 1_555 A SG CYS 82 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf2 A SG CYS 40 A CYS 39 1_555 A SG CYS 93 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 A SG CYS 58 A CYS 57 1_555 A SG CYS 108 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf4 B SG CYS 27 B CYS 26 1_555 B SG CYS 82 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
disulf ? disulf5 B SG CYS 40 B CYS 39 1_555 B SG CYS 93 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 B SG CYS 58 B CYS 57 1_555 B SG CYS 108 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'B H4 O4 -1' 
_chem_comp.formula_weight    78.84 
_chem_comp.id                BO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BORATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B O1 BO4 sing 70 n n 
B O2 BO4 sing 71 n n 
B O3 BO4 sing 72 n n 
B O4 BO4 sing 73 n n 
O1 HO1 BO4 sing 74 n n 
O2 HO2 BO4 sing 75 n n 
O3 HO3 BO4 sing 76 n n 
O4 HO4 BO4 sing 77 n n 
#
_atom_sites.entry_id                     5M9T 
_atom_sites.fract_transf_matrix[1][1]    0.012281 
_atom_sites.fract_transf_matrix[1][2]    0.007091 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01163 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 1 GOL GOL . 
D 3 BO4 A 1 202 1 BO4 BO4 . 
E 4 HOH A 1 301 29 HOH HOH . 
E 4 HOH A 2 302 40 HOH HOH . 
E 4 HOH A 3 303 57 HOH HOH . 
E 4 HOH A 4 304 43 HOH HOH . 
E 4 HOH A 5 305 16 HOH HOH . 
E 4 HOH A 6 306 60 HOH HOH . 
E 4 HOH A 7 307 37 HOH HOH . 
E 4 HOH A 8 308 18 HOH HOH . 
E 4 HOH A 9 309 17 HOH HOH . 
E 4 HOH A 10 310 28 HOH HOH . 
E 4 HOH A 11 311 3 HOH HOH . 
E 4 HOH A 12 312 13 HOH HOH . 
E 4 HOH A 13 313 22 HOH HOH . 
E 4 HOH A 14 314 5 HOH HOH . 
E 4 HOH A 15 315 11 HOH HOH . 
E 4 HOH A 16 316 14 HOH HOH . 
E 4 HOH A 17 317 20 HOH HOH . 
E 4 HOH A 18 318 42 HOH HOH . 
E 4 HOH A 19 319 2 HOH HOH . 
E 4 HOH A 20 320 54 HOH HOH . 
E 4 HOH A 21 321 51 HOH HOH . 
E 4 HOH A 22 322 1 HOH HOH . 
E 4 HOH A 23 323 53 HOH HOH . 
E 4 HOH A 24 324 52 HOH HOH . 
E 4 HOH A 25 325 21 HOH HOH . 
E 4 HOH A 26 326 47 HOH HOH . 
E 4 HOH A 27 327 12 HOH HOH . 
E 4 HOH A 28 328 38 HOH HOH . 
E 4 HOH A 29 329 39 HOH HOH . 
E 4 HOH A 30 330 27 HOH HOH . 
E 4 HOH A 31 331 34 HOH HOH . 
E 4 HOH A 32 332 35 HOH HOH . 
E 4 HOH A 33 333 41 HOH HOH . 
E 4 HOH A 34 334 61 HOH HOH . 
E 4 HOH A 35 335 63 HOH HOH . 
E 4 HOH A 36 336 23 HOH HOH . 
E 4 HOH A 37 337 55 HOH HOH . 
E 4 HOH A 38 338 24 HOH HOH . 
E 4 HOH A 39 339 67 HOH HOH . 
E 4 HOH A 40 340 48 HOH HOH . 
E 4 HOH A 41 341 45 HOH HOH . 
E 4 HOH A 42 342 44 HOH HOH . 
E 4 HOH A 43 343 19 HOH HOH . 
E 4 HOH A 44 344 65 HOH HOH . 
F 4 HOH B 1 201 68 HOH HOH . 
F 4 HOH B 2 202 9 HOH HOH . 
F 4 HOH B 3 203 56 HOH HOH . 
F 4 HOH B 4 204 4 HOH HOH . 
F 4 HOH B 5 205 10 HOH HOH . 
F 4 HOH B 6 206 31 HOH HOH . 
F 4 HOH B 7 207 69 HOH HOH . 
F 4 HOH B 8 208 15 HOH HOH . 
F 4 HOH B 9 209 62 HOH HOH . 
F 4 HOH B 10 210 32 HOH HOH . 
F 4 HOH B 11 211 46 HOH HOH . 
F 4 HOH B 12 212 6 HOH HOH . 
F 4 HOH B 13 213 8 HOH HOH . 
F 4 HOH B 14 214 30 HOH HOH . 
F 4 HOH B 15 215 33 HOH HOH . 
F 4 HOH B 16 216 7 HOH HOH . 
F 4 HOH B 17 217 49 HOH HOH . 
F 4 HOH B 18 218 25 HOH HOH . 
F 4 HOH B 19 219 36 HOH HOH . 
F 4 HOH B 20 220 64 HOH HOH . 
F 4 HOH B 21 221 26 HOH HOH . 
F 4 HOH B 22 222 50 HOH HOH . 
F 4 HOH B 23 223 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B BO4 . . . D 3 -23.873 48.881 54.665 1 71.37 ? B BO4 202 A 1 
HETATM 2 O O1 BO4 . . . D 3 -25.312 48.935 55.182 1 67.86 ? O1 BO4 202 A 1 
HETATM 3 O O2 BO4 . . . D 3 -23.348 50.091 53.902 1 61.54 ? O2 BO4 202 A 1 
HETATM 4 O O3 BO4 . . . D 3 -23.409 47.482 54.289 1 71.61 ? O3 BO4 202 A 1 
HETATM 5 O O4 BO4 . . . D 3 -23.009 49.062 55.913 1 78.25 ? O4 BO4 202 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           53 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#