data_5M9V
#
_model_server_result.job_id            VrgGsL-JNbEGo85z9QR8UQ 
_model_server_result.datetime_utc      '2024-10-18 04:22:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m9v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5M9V 
#
_exptl.entry_id    5M9V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'C121 is has a glutathione bound, for refinement purposes this was modelled as a cysteine in the same chain, which has been added to the alignment.' 
_entity.formula_weight              307.323 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLUTATHIONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     3.1.27.- 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M9V 
_cell.length_a            82.539 
_cell.length_b            118.969 
_cell.length_c            37.409 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M9V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 26 1_555 A SG CYS 82 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
disulf ? disulf2 A SG CYS 40 A CYS 39 1_555 A SG CYS 93 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf3 A SG CYS 58 A CYS 57 1_555 A SG CYS 108 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
covale ? covale1 A SG CYS 122 A CYS 121 1_555 C SG2 GSH . A GSH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C10 H17 N3 O6 S' 
_chem_comp.formula_weight    307.323 
_chem_comp.id                GSH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLUTATHIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 CA1 GSH sing 129 n n 
N1 HN11 GSH sing 130 n n 
N1 HN12 GSH sing 131 n n 
CA1 C1 GSH sing 132 n n 
CA1 CB1 GSH sing 133 n n 
CA1 HA1 GSH sing 134 n n 
C1 O11 GSH doub 135 n n 
C1 O12 GSH sing 136 n n 
O12 H12 GSH sing 137 n n 
CB1 CG1 GSH sing 138 n n 
CB1 HB12 GSH sing 139 n n 
CB1 HB13 GSH sing 140 n n 
CG1 CD1 GSH sing 141 n n 
CG1 HG12 GSH sing 142 n n 
CG1 HG13 GSH sing 143 n n 
CD1 OE1 GSH doub 144 n n 
CD1 N2 GSH sing 145 n n 
N2 CA2 GSH sing 146 n n 
N2 HN2 GSH sing 147 n n 
CA2 C2 GSH sing 148 n n 
CA2 CB2 GSH sing 149 n n 
CA2 HA2 GSH sing 150 n n 
C2 O2 GSH doub 151 n n 
C2 N3 GSH sing 152 n n 
CB2 SG2 GSH sing 153 n n 
CB2 HB22 GSH sing 154 n n 
CB2 HB23 GSH sing 155 n n 
SG2 HSG GSH sing 156 n n 
N3 CA3 GSH sing 157 n n 
N3 HN3 GSH sing 158 n n 
CA3 C3 GSH sing 159 n n 
CA3 HA31 GSH sing 160 n n 
CA3 HA32 GSH sing 161 n n 
C3 O31 GSH doub 162 n n 
C3 O32 GSH sing 163 n n 
O32 H32 GSH sing 164 n n 
#
_atom_sites.entry_id                     5M9V 
_atom_sites.fract_transf_matrix[1][1]    0.012115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TLA A 1 301 1 TLA TLA . 
C 3 GSH A 1 302 201 GSH CYS . 
D 4 HOH A 1 401 107 HOH HOH . 
D 4 HOH A 2 402 108 HOH HOH . 
D 4 HOH A 3 403 21 HOH HOH . 
D 4 HOH A 4 404 71 HOH HOH . 
D 4 HOH A 5 405 34 HOH HOH . 
D 4 HOH A 6 406 33 HOH HOH . 
D 4 HOH A 7 407 22 HOH HOH . 
D 4 HOH A 8 408 95 HOH HOH . 
D 4 HOH A 9 409 75 HOH HOH . 
D 4 HOH A 10 410 104 HOH HOH . 
D 4 HOH A 11 411 13 HOH HOH . 
D 4 HOH A 12 412 64 HOH HOH . 
D 4 HOH A 13 413 11 HOH HOH . 
D 4 HOH A 14 414 39 HOH HOH . 
D 4 HOH A 15 415 81 HOH HOH . 
D 4 HOH A 16 416 38 HOH HOH . 
D 4 HOH A 17 417 27 HOH HOH . 
D 4 HOH A 18 418 19 HOH HOH . 
D 4 HOH A 19 419 62 HOH HOH . 
D 4 HOH A 20 420 101 HOH HOH . 
D 4 HOH A 21 421 73 HOH HOH . 
D 4 HOH A 22 422 77 HOH HOH . 
D 4 HOH A 23 423 82 HOH HOH . 
D 4 HOH A 24 424 59 HOH HOH . 
D 4 HOH A 25 425 65 HOH HOH . 
D 4 HOH A 26 426 10 HOH HOH . 
D 4 HOH A 27 427 42 HOH HOH . 
D 4 HOH A 28 428 32 HOH HOH . 
D 4 HOH A 29 429 4 HOH HOH . 
D 4 HOH A 30 430 89 HOH HOH . 
D 4 HOH A 31 431 86 HOH HOH . 
D 4 HOH A 32 432 54 HOH HOH . 
D 4 HOH A 33 433 35 HOH HOH . 
D 4 HOH A 34 434 88 HOH HOH . 
D 4 HOH A 35 435 72 HOH HOH . 
D 4 HOH A 36 436 5 HOH HOH . 
D 4 HOH A 37 437 3 HOH HOH . 
D 4 HOH A 38 438 91 HOH HOH . 
D 4 HOH A 39 439 29 HOH HOH . 
D 4 HOH A 40 440 1 HOH HOH . 
D 4 HOH A 41 441 52 HOH HOH . 
D 4 HOH A 42 442 37 HOH HOH . 
D 4 HOH A 43 443 69 HOH HOH . 
D 4 HOH A 44 444 25 HOH HOH . 
D 4 HOH A 45 445 70 HOH HOH . 
D 4 HOH A 46 446 20 HOH HOH . 
D 4 HOH A 47 447 99 HOH HOH . 
D 4 HOH A 48 448 6 HOH HOH . 
D 4 HOH A 49 449 31 HOH HOH . 
D 4 HOH A 50 450 110 HOH HOH . 
D 4 HOH A 51 451 97 HOH HOH . 
D 4 HOH A 52 452 41 HOH HOH . 
D 4 HOH A 53 453 23 HOH HOH . 
D 4 HOH A 54 454 36 HOH HOH . 
D 4 HOH A 55 455 78 HOH HOH . 
D 4 HOH A 56 456 30 HOH HOH . 
D 4 HOH A 57 457 55 HOH HOH . 
D 4 HOH A 58 458 15 HOH HOH . 
D 4 HOH A 59 459 44 HOH HOH . 
D 4 HOH A 60 460 8 HOH HOH . 
D 4 HOH A 61 461 63 HOH HOH . 
D 4 HOH A 62 462 28 HOH HOH . 
D 4 HOH A 63 463 56 HOH HOH . 
D 4 HOH A 64 464 17 HOH HOH . 
D 4 HOH A 65 465 83 HOH HOH . 
D 4 HOH A 66 466 106 HOH HOH . 
D 4 HOH A 67 467 53 HOH HOH . 
D 4 HOH A 68 468 46 HOH HOH . 
D 4 HOH A 69 469 9 HOH HOH . 
D 4 HOH A 70 470 87 HOH HOH . 
D 4 HOH A 71 471 2 HOH HOH . 
D 4 HOH A 72 472 18 HOH HOH . 
D 4 HOH A 73 473 7 HOH HOH . 
D 4 HOH A 74 474 16 HOH HOH . 
D 4 HOH A 75 475 105 HOH HOH . 
D 4 HOH A 76 476 103 HOH HOH . 
D 4 HOH A 77 477 43 HOH HOH . 
D 4 HOH A 78 478 90 HOH HOH . 
D 4 HOH A 79 479 93 HOH HOH . 
D 4 HOH A 80 480 51 HOH HOH . 
D 4 HOH A 81 481 45 HOH HOH . 
D 4 HOH A 82 482 60 HOH HOH . 
D 4 HOH A 83 483 26 HOH HOH . 
D 4 HOH A 84 484 50 HOH HOH . 
D 4 HOH A 85 485 14 HOH HOH . 
D 4 HOH A 86 486 66 HOH HOH . 
D 4 HOH A 87 487 109 HOH HOH . 
D 4 HOH A 88 488 68 HOH HOH . 
D 4 HOH A 89 489 79 HOH HOH . 
D 4 HOH A 90 490 92 HOH HOH . 
D 4 HOH A 91 491 61 HOH HOH . 
D 4 HOH A 92 492 12 HOH HOH . 
D 4 HOH A 93 493 58 HOH HOH . 
D 4 HOH A 94 494 67 HOH HOH . 
D 4 HOH A 95 495 100 HOH HOH . 
D 4 HOH A 96 496 98 HOH HOH . 
D 4 HOH A 97 497 80 HOH HOH . 
D 4 HOH A 98 498 49 HOH HOH . 
D 4 HOH A 99 499 85 HOH HOH . 
D 4 HOH A 100 500 94 HOH HOH . 
D 4 HOH A 101 501 40 HOH HOH . 
D 4 HOH A 102 502 47 HOH HOH . 
D 4 HOH A 103 503 24 HOH HOH . 
D 4 HOH A 104 504 102 HOH HOH . 
D 4 HOH A 105 505 96 HOH HOH . 
D 4 HOH A 106 506 76 HOH HOH . 
D 4 HOH A 107 507 48 HOH HOH . 
D 4 HOH A 108 508 57 HOH HOH . 
D 4 HOH A 109 509 74 HOH HOH . 
D 4 HOH A 110 510 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GSH . . . C 3 -30.026 -30.642 8.351 1 65.14 ? N2 GSH 302 A 1 
HETATM 2 C CA2 GSH . . . C 3 -30.854 -31.831 8.129 1 67.22 ? CA2 GSH 302 A 1 
HETATM 3 C C2 GSH . . . C 3 -30.041 -33.108 8.303 1 65.7 ? C2 GSH 302 A 1 
HETATM 4 O O2 GSH . . . C 3 -30.506 -34.19 7.968 1 63.38 ? O2 GSH 302 A 1 
HETATM 5 C CB2 GSH . . . C 3 -31.476 -31.817 6.724 1 67.79 ? CB2 GSH 302 A 1 
HETATM 6 S SG2 GSH . . . C 3 -32.307 -30.278 6.245 1 66.04 ? SG2 GSH 302 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#