data_5MA1 # _model_server_result.job_id KQ9w2IjZc-E8TK_LqlxY1A _model_server_result.datetime_utc '2024-11-25 15:30:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ma1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":504}' # _entry.id 5MA1 # _exptl.entry_id 5MA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MA1 _cell.length_a 73.461 _cell.length_b 73.461 _cell.length_c 179.365 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 329 A CYS 329 1_555 C FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 332 A CYS 332 1_555 C FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 A SG CYS 335 A CYS 335 1_555 C FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A SG CYS 339 A CYS 339 1_555 D FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 A SG CYS 372 A CYS 372 1_555 D FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 A SG CYS 383 A CYS 383 1_555 D FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 A SG CYS 386 A CYS 386 1_555 D FE2 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 A SG CYS 390 A CYS 390 1_555 C FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc9 B SG CYS 329 B CYS 329 1_555 H FE2 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc10 B SG CYS 332 B CYS 332 1_555 H FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc11 B SG CYS 335 B CYS 335 1_555 H FE3 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc12 B SG CYS 339 B CYS 339 1_555 I FE4 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc13 B SG CYS 372 B CYS 372 1_555 I FE3 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc14 B SG CYS 383 B CYS 383 1_555 I FE1 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc15 B SG CYS 386 B CYS 386 1_555 I FE2 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 B SG CYS 390 B CYS 390 1_555 H FE1 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 310 n n C1 C2 GOL sing 311 n n C1 H11 GOL sing 312 n n C1 H12 GOL sing 313 n n O1 HO1 GOL sing 314 n n C2 O2 GOL sing 315 n n C2 C3 GOL sing 316 n n C2 H2 GOL sing 317 n n O2 HO2 GOL sing 318 n n C3 O3 GOL sing 319 n n C3 H31 GOL sing 320 n n C3 H32 GOL sing 321 n n O3 HO3 GOL sing 322 n n # _atom_sites.entry_id 5MA1 _atom_sites.fract_transf_matrix[1][1] 0.013613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 501 501 SF4 SF4 . D 2 SF4 A 1 502 502 SF4 SF4 . E 3 BVQ A 1 503 503 BVQ BVQ . F 4 GOL A 1 504 514 GOL GOL . G 5 T6C A 1 505 2 T6C 246 . H 2 SF4 B 1 501 501 SF4 SF4 . I 2 SF4 B 1 502 502 SF4 SF4 . J 3 BVQ B 1 503 503 BVQ BVQ . K 4 GOL B 1 504 514 GOL GOL . L 5 T6C B 1 505 1 T6C 246 . M 6 HOH A 1 601 203 HOH HOH . M 6 HOH A 2 602 86 HOH HOH . M 6 HOH A 3 603 77 HOH HOH . M 6 HOH A 4 604 17 HOH HOH . M 6 HOH A 5 605 96 HOH HOH . M 6 HOH A 6 606 59 HOH HOH . M 6 HOH A 7 607 27 HOH HOH . M 6 HOH A 8 608 101 HOH HOH . M 6 HOH A 9 609 7 HOH HOH . M 6 HOH A 10 610 24 HOH HOH . M 6 HOH A 11 611 64 HOH HOH . M 6 HOH A 12 612 72 HOH HOH . M 6 HOH A 13 613 43 HOH HOH . M 6 HOH A 14 614 28 HOH HOH . M 6 HOH A 15 615 89 HOH HOH . M 6 HOH A 16 616 82 HOH HOH . M 6 HOH A 17 617 228 HOH HOH . M 6 HOH A 18 618 76 HOH HOH . M 6 HOH A 19 619 61 HOH HOH . M 6 HOH A 20 620 39 HOH HOH . M 6 HOH A 21 621 34 HOH HOH . M 6 HOH A 22 622 48 HOH HOH . M 6 HOH A 23 623 79 HOH HOH . M 6 HOH A 24 624 29 HOH HOH . M 6 HOH A 25 625 21 HOH HOH . M 6 HOH A 26 626 99 HOH HOH . M 6 HOH A 27 627 38 HOH HOH . M 6 HOH A 28 628 65 HOH HOH . M 6 HOH A 29 629 58 HOH HOH . M 6 HOH A 30 630 103 HOH HOH . M 6 HOH A 31 631 6 HOH HOH . M 6 HOH A 32 632 30 HOH HOH . M 6 HOH A 33 633 95 HOH HOH . M 6 HOH A 34 634 36 HOH HOH . M 6 HOH A 35 635 53 HOH HOH . M 6 HOH A 36 636 205 HOH HOH . M 6 HOH A 37 637 50 HOH HOH . M 6 HOH A 38 638 16 HOH HOH . M 6 HOH A 39 639 85 HOH HOH . M 6 HOH A 40 640 200 HOH HOH . M 6 HOH A 41 641 15 HOH HOH . M 6 HOH A 42 642 3 HOH HOH . M 6 HOH A 43 643 42 HOH HOH . M 6 HOH A 44 644 11 HOH HOH . M 6 HOH A 45 645 60 HOH HOH . M 6 HOH A 46 646 32 HOH HOH . M 6 HOH A 47 647 8 HOH HOH . M 6 HOH A 48 648 52 HOH HOH . M 6 HOH A 49 649 33 HOH HOH . M 6 HOH A 50 650 70 HOH HOH . M 6 HOH A 51 651 83 HOH HOH . M 6 HOH A 52 652 41 HOH HOH . M 6 HOH A 53 653 12 HOH HOH . M 6 HOH A 54 654 73 HOH HOH . M 6 HOH A 55 655 87 HOH HOH . M 6 HOH A 56 656 94 HOH HOH . M 6 HOH A 57 657 47 HOH HOH . M 6 HOH A 58 658 98 HOH HOH . M 6 HOH A 59 659 13 HOH HOH . M 6 HOH A 60 660 37 HOH HOH . M 6 HOH A 61 661 93 HOH HOH . M 6 HOH A 62 662 25 HOH HOH . M 6 HOH A 63 663 55 HOH HOH . M 6 HOH A 64 664 45 HOH HOH . M 6 HOH A 65 665 88 HOH HOH . M 6 HOH A 66 666 91 HOH HOH . M 6 HOH A 67 667 35 HOH HOH . M 6 HOH A 68 668 71 HOH HOH . M 6 HOH A 69 669 26 HOH HOH . M 6 HOH A 70 670 90 HOH HOH . M 6 HOH A 71 671 78 HOH HOH . M 6 HOH A 72 672 57 HOH HOH . M 6 HOH A 73 673 49 HOH HOH . M 6 HOH A 74 674 44 HOH HOH . M 6 HOH A 75 675 92 HOH HOH . M 6 HOH A 76 676 75 HOH HOH . M 6 HOH A 77 677 100 HOH HOH . M 6 HOH A 78 678 213 HOH HOH . M 6 HOH A 79 679 23 HOH HOH . M 6 HOH A 80 680 31 HOH HOH . M 6 HOH A 81 681 22 HOH HOH . M 6 HOH A 82 682 51 HOH HOH . M 6 HOH A 83 683 97 HOH HOH . M 6 HOH A 84 684 4 HOH HOH . M 6 HOH A 85 685 81 HOH HOH . M 6 HOH A 86 686 74 HOH HOH . M 6 HOH A 87 687 211 HOH HOH . M 6 HOH A 88 688 223 HOH HOH . M 6 HOH A 89 689 62 HOH HOH . M 6 HOH A 90 690 2 HOH HOH . M 6 HOH A 91 691 46 HOH HOH . M 6 HOH A 92 692 84 HOH HOH . M 6 HOH A 93 693 9 HOH HOH . M 6 HOH A 94 694 80 HOH HOH . M 6 HOH A 95 695 226 HOH HOH . M 6 HOH A 96 696 202 HOH HOH . M 6 HOH A 97 697 69 HOH HOH . M 6 HOH A 98 698 225 HOH HOH . M 6 HOH A 99 699 187 HOH HOH . M 6 HOH A 100 700 68 HOH HOH . M 6 HOH A 101 701 56 HOH HOH . M 6 HOH A 102 702 227 HOH HOH . M 6 HOH A 103 703 54 HOH HOH . M 6 HOH A 104 704 14 HOH HOH . M 6 HOH A 105 705 1 HOH HOH . M 6 HOH A 106 706 215 HOH HOH . M 6 HOH A 107 707 10 HOH HOH . N 6 HOH B 1 601 216 HOH HOH . N 6 HOH B 2 602 149 HOH HOH . N 6 HOH B 3 603 127 HOH HOH . N 6 HOH B 4 604 132 HOH HOH . N 6 HOH B 5 605 178 HOH HOH . N 6 HOH B 6 606 131 HOH HOH . N 6 HOH B 7 607 18 HOH HOH . N 6 HOH B 8 608 109 HOH HOH . N 6 HOH B 9 609 175 HOH HOH . N 6 HOH B 10 610 170 HOH HOH . N 6 HOH B 11 611 166 HOH HOH . N 6 HOH B 12 612 194 HOH HOH . N 6 HOH B 13 613 138 HOH HOH . N 6 HOH B 14 614 112 HOH HOH . N 6 HOH B 15 615 147 HOH HOH . N 6 HOH B 16 616 108 HOH HOH . N 6 HOH B 17 617 126 HOH HOH . N 6 HOH B 18 618 123 HOH HOH . N 6 HOH B 19 619 168 HOH HOH . N 6 HOH B 20 620 173 HOH HOH . N 6 HOH B 21 621 152 HOH HOH . N 6 HOH B 22 622 141 HOH HOH . N 6 HOH B 23 623 177 HOH HOH . N 6 HOH B 24 624 179 HOH HOH . N 6 HOH B 25 625 210 HOH HOH . N 6 HOH B 26 626 163 HOH HOH . N 6 HOH B 27 627 151 HOH HOH . N 6 HOH B 28 628 129 HOH HOH . N 6 HOH B 29 629 115 HOH HOH . N 6 HOH B 30 630 128 HOH HOH . N 6 HOH B 31 631 111 HOH HOH . N 6 HOH B 32 632 154 HOH HOH . N 6 HOH B 33 633 157 HOH HOH . N 6 HOH B 34 634 114 HOH HOH . N 6 HOH B 35 635 119 HOH HOH . N 6 HOH B 36 636 186 HOH HOH . N 6 HOH B 37 637 124 HOH HOH . N 6 HOH B 38 638 130 HOH HOH . N 6 HOH B 39 639 174 HOH HOH . N 6 HOH B 40 640 140 HOH HOH . N 6 HOH B 41 641 113 HOH HOH . N 6 HOH B 42 642 190 HOH HOH . N 6 HOH B 43 643 155 HOH HOH . N 6 HOH B 44 644 139 HOH HOH . N 6 HOH B 45 645 219 HOH HOH . N 6 HOH B 46 646 134 HOH HOH . N 6 HOH B 47 647 144 HOH HOH . N 6 HOH B 48 648 207 HOH HOH . N 6 HOH B 49 649 164 HOH HOH . N 6 HOH B 50 650 118 HOH HOH . N 6 HOH B 51 651 180 HOH HOH . N 6 HOH B 52 652 183 HOH HOH . N 6 HOH B 53 653 146 HOH HOH . N 6 HOH B 54 654 162 HOH HOH . N 6 HOH B 55 655 20 HOH HOH . N 6 HOH B 56 656 222 HOH HOH . N 6 HOH B 57 657 136 HOH HOH . N 6 HOH B 58 658 165 HOH HOH . N 6 HOH B 59 659 199 HOH HOH . N 6 HOH B 60 660 143 HOH HOH . N 6 HOH B 61 661 120 HOH HOH . N 6 HOH B 62 662 107 HOH HOH . N 6 HOH B 63 663 19 HOH HOH . N 6 HOH B 64 664 145 HOH HOH . N 6 HOH B 65 665 148 HOH HOH . N 6 HOH B 66 666 135 HOH HOH . N 6 HOH B 67 667 102 HOH HOH . N 6 HOH B 68 668 181 HOH HOH . N 6 HOH B 69 669 188 HOH HOH . N 6 HOH B 70 670 153 HOH HOH . N 6 HOH B 71 671 142 HOH HOH . N 6 HOH B 72 672 176 HOH HOH . N 6 HOH B 73 673 161 HOH HOH . N 6 HOH B 74 674 224 HOH HOH . N 6 HOH B 75 675 137 HOH HOH . N 6 HOH B 76 676 201 HOH HOH . N 6 HOH B 77 677 110 HOH HOH . N 6 HOH B 78 678 167 HOH HOH . N 6 HOH B 79 679 185 HOH HOH . N 6 HOH B 80 680 172 HOH HOH . N 6 HOH B 81 681 40 HOH HOH . N 6 HOH B 82 682 171 HOH HOH . N 6 HOH B 83 683 117 HOH HOH . N 6 HOH B 84 684 160 HOH HOH . N 6 HOH B 85 685 150 HOH HOH . N 6 HOH B 86 686 159 HOH HOH . N 6 HOH B 87 687 133 HOH HOH . N 6 HOH B 88 688 220 HOH HOH . N 6 HOH B 89 689 182 HOH HOH . N 6 HOH B 90 690 169 HOH HOH . N 6 HOH B 91 691 198 HOH HOH . N 6 HOH B 92 692 156 HOH HOH . N 6 HOH B 93 693 184 HOH HOH . N 6 HOH B 94 694 204 HOH HOH . N 6 HOH B 95 695 116 HOH HOH . N 6 HOH B 96 696 158 HOH HOH . N 6 HOH B 97 697 212 HOH HOH . N 6 HOH B 98 698 122 HOH HOH . N 6 HOH B 99 699 105 HOH HOH . N 6 HOH B 100 700 217 HOH HOH . N 6 HOH B 101 701 121 HOH HOH . N 6 HOH B 102 702 197 HOH HOH . N 6 HOH B 103 703 106 HOH HOH . N 6 HOH B 104 704 193 HOH HOH . N 6 HOH B 105 705 214 HOH HOH . N 6 HOH B 106 706 104 HOH HOH . N 6 HOH B 107 707 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 4 103.404 3.734 25.576 1 47.63 ? C1 GOL 504 B 1 HETATM 2 O O1 GOL . . . K 4 103.097 5 26.081 1 52.38 ? O1 GOL 504 B 1 HETATM 3 C C2 GOL . . . K 4 103.515 2.825 26.784 1 58.19 ? C2 GOL 504 B 1 HETATM 4 O O2 GOL . . . K 4 102.271 2.852 27.456 1 59.71 ? O2 GOL 504 B 1 HETATM 5 C C3 GOL . . . K 4 104.618 3.43 27.65 1 58.79 ? C3 GOL 504 B 1 HETATM 6 O O3 GOL . . . K 4 105.028 2.553 28.68 1 53.08 ? O3 GOL 504 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #