data_5MA6 # _model_server_result.job_id ia2bzyBiC8qk52d5DKkZEQ _model_server_result.datetime_utc '2024-12-22 23:20:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ma6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5MA6 # _exptl.entry_id 5MA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MA6 _cell.length_a 70.31 _cell.length_b 70.31 _cell.length_c 432.72 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 69 A LEU 64 1_555 A N1 CRO 70 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale2 A C3 CRO 70 A CRO 66 1_555 A N VAL 71 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 124 n n C1 C2 EDO sing 125 n n C1 H11 EDO sing 126 n n C1 H12 EDO sing 127 n n O1 HO1 EDO sing 128 n n C2 O2 EDO sing 129 n n C2 H21 EDO sing 130 n n C2 H22 EDO sing 131 n n O2 HO2 EDO sing 132 n n # _atom_sites.entry_id 5MA6 _atom_sites.fract_transf_matrix[1][1] 0.014223 _atom_sites.fract_transf_matrix[1][2] 0.008211 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 301 2 PO4 PO4 . D 3 PO4 A 1 302 3 PO4 PO4 . E 3 PO4 A 1 303 6 PO4 PO4 . F 4 EDO A 1 304 2 EDO EDO . G 3 PO4 B 1 201 1 PO4 PO4 . H 3 PO4 B 1 202 7 PO4 PO4 . I 5 HOH A 1 401 53 HOH HOH . I 5 HOH A 2 402 12 HOH HOH . I 5 HOH A 3 403 50 HOH HOH . I 5 HOH A 4 404 15 HOH HOH . I 5 HOH A 5 405 54 HOH HOH . I 5 HOH A 6 406 47 HOH HOH . I 5 HOH A 7 407 56 HOH HOH . I 5 HOH A 8 408 48 HOH HOH . I 5 HOH A 9 409 46 HOH HOH . I 5 HOH A 10 410 5 HOH HOH . I 5 HOH A 11 411 40 HOH HOH . I 5 HOH A 12 412 45 HOH HOH . I 5 HOH A 13 413 41 HOH HOH . I 5 HOH A 14 414 58 HOH HOH . I 5 HOH A 15 415 43 HOH HOH . I 5 HOH A 16 416 61 HOH HOH . I 5 HOH A 17 417 57 HOH HOH . I 5 HOH A 18 418 33 HOH HOH . I 5 HOH A 19 419 44 HOH HOH . I 5 HOH A 20 420 24 HOH HOH . I 5 HOH A 21 421 49 HOH HOH . I 5 HOH A 22 422 51 HOH HOH . I 5 HOH A 23 423 59 HOH HOH . I 5 HOH A 24 424 8 HOH HOH . I 5 HOH A 25 425 35 HOH HOH . I 5 HOH A 26 426 52 HOH HOH . I 5 HOH A 27 427 2 HOH HOH . I 5 HOH A 28 428 23 HOH HOH . J 5 HOH B 1 301 7 HOH HOH . J 5 HOH B 2 302 29 HOH HOH . J 5 HOH B 3 303 21 HOH HOH . J 5 HOH B 4 304 39 HOH HOH . J 5 HOH B 5 305 32 HOH HOH . J 5 HOH B 6 306 6 HOH HOH . J 5 HOH B 7 307 60 HOH HOH . J 5 HOH B 8 308 25 HOH HOH . J 5 HOH B 9 309 42 HOH HOH . J 5 HOH B 10 310 30 HOH HOH . J 5 HOH B 11 311 34 HOH HOH . J 5 HOH B 12 312 38 HOH HOH . J 5 HOH B 13 313 22 HOH HOH . J 5 HOH B 14 314 36 HOH HOH . J 5 HOH B 15 315 37 HOH HOH . J 5 HOH B 16 316 55 HOH HOH . J 5 HOH B 17 317 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -14.683 30.439 -0.359 1 108.4 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . F 4 -13.9 30.902 -1.467 1 99.51 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . F 4 -14.325 28.981 -0.076 1 108.39 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . F 4 -13.332 28.906 0.953 1 98.99 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #