data_5MAF # _model_server_result.job_id W80ob9R8BONLqJiB-SfNmg _model_server_result.datetime_utc '2024-12-04 12:20:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5maf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5MAF # _exptl.entry_id 5MAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MAF _cell.length_a 59.913 _cell.length_b 63.713 _cell.length_c 91.292 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5MAF _atom_sites.fract_transf_matrix[1][1] 0.016691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1 DMS DMS . C 3 CL A 1 402 1 CL CL . D 4 XIN A 1 403 1 XIN XIN . E 5 HOH A 1 501 60 HOH HOH . E 5 HOH A 2 502 70 HOH HOH . E 5 HOH A 3 503 10 HOH HOH . E 5 HOH A 4 504 12 HOH HOH . E 5 HOH A 5 505 3 HOH HOH . E 5 HOH A 6 506 5 HOH HOH . E 5 HOH A 7 507 18 HOH HOH . E 5 HOH A 8 508 25 HOH HOH . E 5 HOH A 9 509 8 HOH HOH . E 5 HOH A 10 510 15 HOH HOH . E 5 HOH A 11 511 38 HOH HOH . E 5 HOH A 12 512 54 HOH HOH . E 5 HOH A 13 513 68 HOH HOH . E 5 HOH A 14 514 21 HOH HOH . E 5 HOH A 15 515 11 HOH HOH . E 5 HOH A 16 516 26 HOH HOH . E 5 HOH A 17 517 72 HOH HOH . E 5 HOH A 18 518 1 HOH HOH . E 5 HOH A 19 519 27 HOH HOH . E 5 HOH A 20 520 6 HOH HOH . E 5 HOH A 21 521 40 HOH HOH . E 5 HOH A 22 522 37 HOH HOH . E 5 HOH A 23 523 34 HOH HOH . E 5 HOH A 24 524 28 HOH HOH . E 5 HOH A 25 525 19 HOH HOH . E 5 HOH A 26 526 23 HOH HOH . E 5 HOH A 27 527 29 HOH HOH . E 5 HOH A 28 528 30 HOH HOH . E 5 HOH A 29 529 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 20.519 -0.575 91.929 1 93.33 ? S DMS 401 A 1 HETATM 2 O O DMS . . . B 2 20.895 -1.722 91.07 1 93.33 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . B 2 21.91 0.012 92.724 1 90.59 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . B 2 20.104 0.749 90.941 1 90.84 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #