data_5MAF
#
_model_server_result.job_id            1fBOWHdKh5X-6JSxu8AZhA 
_model_server_result.datetime_utc      '2024-10-10 17:21:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5maf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5MAF 
#
_exptl.entry_id    5MAF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.625 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (3Z)-3-{[(4-{methyl[(4-methylpiperazin-1-yl)acetyl]amino}phenyl)amino](phenyl)methylidene}-2-oxo-2,3-dihydro-1H-indole-6-carboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MAF 
_cell.length_a            59.913 
_cell.length_b            63.713 
_cell.length_c            91.292 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H33 N5 O4' 
_chem_comp.formula_weight    539.625 
_chem_comp.id                XIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (3Z)-3-{[(4-{methyl[(4-methylpiperazin-1-yl)acetyl]amino}phenyl)amino](phenyl)methylidene}-2-oxo-2,3-dihydro-1H-indole-6-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 XIN sing 385 n n 
C1 C3 XIN doub 386 z n 
C1 C4 XIN sing 387 n n 
C2 C5 XIN doub 388 n y 
C2 C6 XIN sing 389 n y 
C3 C7 XIN sing 390 n n 
C3 N8 XIN sing 391 n n 
C4 N9 XIN sing 392 n n 
C4 O10 XIN doub 393 n n 
C5 C11 XIN sing 394 n y 
C5 N9 XIN sing 395 n n 
C6 C12 XIN doub 396 n y 
C7 C14 XIN doub 397 n y 
C7 C13 XIN sing 398 n y 
C11 C16 XIN doub 399 n y 
C12 C16 XIN sing 400 n y 
C15 C19 XIN doub 401 n y 
C15 C20 XIN sing 402 n y 
C15 N8 XIN sing 403 n n 
C16 C21 XIN sing 404 n n 
C17 C22 XIN sing 405 n y 
C17 C13 XIN doub 406 n y 
C18 C14 XIN sing 407 n y 
C18 C22 XIN doub 408 n y 
C19 C23 XIN sing 409 n y 
C21 O25 XIN sing 410 n n 
C21 O26 XIN doub 411 n n 
C23 C27 XIN doub 412 n y 
C24 C27 XIN sing 413 n y 
C24 C20 XIN doub 414 n y 
O25 C28 XIN sing 415 n n 
C27 N29 XIN sing 416 n n 
C30 C32 XIN sing 417 n n 
C30 O33 XIN doub 418 n n 
C30 N29 XIN sing 419 n n 
C31 N29 XIN sing 420 n n 
C32 N34 XIN sing 421 n n 
C35 C37 XIN sing 422 n n 
C35 N34 XIN sing 423 n n 
C36 C38 XIN sing 424 n n 
C36 N34 XIN sing 425 n n 
C37 N39 XIN sing 426 n n 
C38 N39 XIN sing 427 n n 
C40 N39 XIN sing 428 n n 
C6 H6 XIN sing 429 n n 
C11 H11 XIN sing 430 n n 
C12 H12 XIN sing 431 n n 
C17 H17 XIN sing 432 n n 
C18 H18 XIN sing 433 n n 
C19 H19 XIN sing 434 n n 
C23 H23 XIN sing 435 n n 
C24 H24 XIN sing 436 n n 
C31 H31 XIN sing 437 n n 
C31 H31A XIN sing 438 n n 
C31 H31B XIN sing 439 n n 
C32 H32 XIN sing 440 n n 
C32 H32A XIN sing 441 n n 
C35 H35 XIN sing 442 n n 
C35 H35A XIN sing 443 n n 
C36 H36 XIN sing 444 n n 
C36 H36A XIN sing 445 n n 
C37 H37 XIN sing 446 n n 
C37 H37A XIN sing 447 n n 
C38 H38 XIN sing 448 n n 
C38 H38A XIN sing 449 n n 
C40 H40 XIN sing 450 n n 
C40 H40A XIN sing 451 n n 
C40 H40B XIN sing 452 n n 
C20 H20 XIN sing 453 n n 
N8 HN8 XIN sing 454 n n 
C14 H14 XIN sing 455 n n 
C22 H22 XIN sing 456 n n 
C13 H13 XIN sing 457 n n 
C28 H28 XIN sing 458 n n 
C28 H28A XIN sing 459 n n 
C28 H28B XIN sing 460 n n 
N9 HN9 XIN sing 461 n n 
#
_atom_sites.entry_id                     5MAF 
_atom_sites.fract_transf_matrix[1][1]    0.016691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015695 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 401 1 DMS DMS . 
C 3 CL A 1 402 1 CL CL . 
D 4 XIN A 1 403 1 XIN XIN . 
E 5 HOH A 1 501 60 HOH HOH . 
E 5 HOH A 2 502 70 HOH HOH . 
E 5 HOH A 3 503 10 HOH HOH . 
E 5 HOH A 4 504 12 HOH HOH . 
E 5 HOH A 5 505 3 HOH HOH . 
E 5 HOH A 6 506 5 HOH HOH . 
E 5 HOH A 7 507 18 HOH HOH . 
E 5 HOH A 8 508 25 HOH HOH . 
E 5 HOH A 9 509 8 HOH HOH . 
E 5 HOH A 10 510 15 HOH HOH . 
E 5 HOH A 11 511 38 HOH HOH . 
E 5 HOH A 12 512 54 HOH HOH . 
E 5 HOH A 13 513 68 HOH HOH . 
E 5 HOH A 14 514 21 HOH HOH . 
E 5 HOH A 15 515 11 HOH HOH . 
E 5 HOH A 16 516 26 HOH HOH . 
E 5 HOH A 17 517 72 HOH HOH . 
E 5 HOH A 18 518 1 HOH HOH . 
E 5 HOH A 19 519 27 HOH HOH . 
E 5 HOH A 20 520 6 HOH HOH . 
E 5 HOH A 21 521 40 HOH HOH . 
E 5 HOH A 22 522 37 HOH HOH . 
E 5 HOH A 23 523 34 HOH HOH . 
E 5 HOH A 24 524 28 HOH HOH . 
E 5 HOH A 25 525 19 HOH HOH . 
E 5 HOH A 26 526 23 HOH HOH . 
E 5 HOH A 27 527 29 HOH HOH . 
E 5 HOH A 28 528 30 HOH HOH . 
E 5 HOH A 29 529 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XIN . . . D 4 15.728 8.166 95.666 1 42.59 ? C1 XIN 403 A 1 
HETATM 2 C C2 XIN . . . D 4 15.779 8.164 97.036 1 42.97 ? C2 XIN 403 A 1 
HETATM 3 C C3 XIN . . . D 4 15.14 9.064 94.799 1 43.43 ? C3 XIN 403 A 1 
HETATM 4 C C4 XIN . . . D 4 16.356 7.04 95.285 1 42.27 ? C4 XIN 403 A 1 
HETATM 5 C C5 XIN . . . D 4 16.447 7.046 97.417 1 42.63 ? C5 XIN 403 A 1 
HETATM 6 C C6 XIN . . . D 4 15.341 8.986 98.027 1 42.61 ? C6 XIN 403 A 1 
HETATM 7 C C7 XIN . . . D 4 14.567 10.221 95.314 1 43.88 ? C7 XIN 403 A 1 
HETATM 8 C C11 XIN . . . D 4 16.681 6.743 98.705 1 41.88 ? C11 XIN 403 A 1 
HETATM 9 C C12 XIN . . . D 4 15.558 8.719 99.379 1 41.69 ? C12 XIN 403 A 1 
HETATM 10 C C15 XIN . . . D 4 14.489 9.456 92.428 1 46.33 ? C15 XIN 403 A 1 
HETATM 11 C C16 XIN . . . D 4 16.246 7.571 99.744 1 42.17 ? C16 XIN 403 A 1 
HETATM 12 C C17 XIN . . . D 4 12.629 11.502 95.98 1 42.95 ? C17 XIN 403 A 1 
HETATM 13 C C18 XIN . . . D 4 14.844 12.42 96.272 1 43.15 ? C18 XIN 403 A 1 
HETATM 14 C C19 XIN . . . D 4 14.174 8.645 91.323 1 47.37 ? C19 XIN 403 A 1 
HETATM 15 C C21 XIN . . . D 4 16.463 7.262 101.094 1 42.91 ? C21 XIN 403 A 1 
HETATM 16 C C23 XIN . . . D 4 13.576 9.141 90.173 1 48.78 ? C23 XIN 403 A 1 
HETATM 17 C C24 XIN . . . D 4 13.573 11.338 91.15 1 47.75 ? C24 XIN 403 A 1 
HETATM 18 O O25 XIN . . . D 4 16.494 5.919 101.367 1 42.57 ? O25 XIN 403 A 1 
HETATM 19 O O26 XIN . . . D 4 16.529 8.147 101.945 1 44.61 ? O26 XIN 403 A 1 
HETATM 20 C C27 XIN . . . D 4 13.282 10.495 90.072 1 51.01 ? C27 XIN 403 A 1 
HETATM 21 C C30 XIN . . . D 4 13.348 11.404 87.845 1 58.76 ? C30 XIN 403 A 1 
HETATM 22 C C31 XIN . . . D 4 11.233 10.672 88.83 1 55.97 ? C31 XIN 403 A 1 
HETATM 23 C C32 XIN . . . D 4 14.884 11.684 87.893 1 63.4 ? C32 XIN 403 A 1 
HETATM 24 C C35 XIN . . . D 4 15.507 12.577 85.709 1 69.08 ? C35 XIN 403 A 1 
HETATM 25 C C36 XIN . . . D 4 16.807 10.75 86.675 1 69.21 ? C36 XIN 403 A 1 
HETATM 26 C C37 XIN . . . D 4 15.986 12.236 84.319 1 70.61 ? C37 XIN 403 A 1 
HETATM 27 C C38 XIN . . . D 4 17.256 10.359 85.275 1 70.62 ? C38 XIN 403 A 1 
HETATM 28 C C40 XIN . . . D 4 17.967 11.264 83.174 1 72.26 ? C40 XIN 403 A 1 
HETATM 29 O O33 XIN . . . D 4 12.732 11.713 86.826 1 58.35 ? O33 XIN 403 A 1 
HETATM 30 N N34 XIN . . . D 4 15.444 11.356 86.561 1 67.43 ? N34 XIN 403 A 1 
HETATM 31 N N39 XIN . . . D 4 17.324 11.59 84.477 1 71.98 ? N39 XIN 403 A 1 
HETATM 32 N N29 XIN . . . D 4 12.689 10.907 88.941 1 55.23 ? N29 XIN 403 A 1 
HETATM 33 C C20 XIN . . . D 4 14.181 10.832 92.314 1 46.28 ? C20 XIN 403 A 1 
HETATM 34 N N8 XIN . . . D 4 15.088 8.767 93.452 1 45.32 ? N8 XIN 403 A 1 
HETATM 35 C C14 XIN . . . D 4 15.399 11.264 95.726 1 43.34 ? C14 XIN 403 A 1 
HETATM 36 C C22 XIN . . . D 4 13.459 12.544 96.394 1 42.48 ? C22 XIN 403 A 1 
HETATM 37 C C13 XIN . . . D 4 13.181 10.336 95.445 1 43.88 ? C13 XIN 403 A 1 
HETATM 38 C C28 XIN . . . D 4 16.69 5.465 102.718 1 42.63 ? C28 XIN 403 A 1 
HETATM 39 N N9 XIN . . . D 4 16.792 6.368 96.332 1 42.94 ? N9 XIN 403 A 1 
HETATM 40 O O10 XIN . . . D 4 16.527 6.649 94.128 1 40.82 ? O10 XIN 403 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#