data_5MAG # _model_server_result.job_id y9ctKiObhEN5UZjZBPmj-g _model_server_result.datetime_utc '2024-10-10 17:21:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5MAG # _exptl.entry_id 5MAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.624 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PF-3758309 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MAG _cell.length_a 61.18 _cell.length_b 62.81 _cell.length_c 94.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H30 N8 O S' _chem_comp.formula_weight 490.624 _chem_comp.id 7KC _chem_comp.mon_nstd_flag . _chem_comp.name PF-3758309 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 N25 7KC sing 1 n n N25 C26 7KC sing 2 n n N25 C24 7KC sing 3 n n C24 C23 7KC sing 4 n n C29 C30 7KC doub 5 n y C29 C28 7KC sing 6 n y O21 C20 7KC doub 7 n n C23 C28 7KC sing 8 n n C23 N22 7KC sing 9 n n C30 C31 7KC sing 10 n y C28 C33 7KC doub 11 n y C20 N22 7KC sing 12 n n C20 N18 7KC sing 13 n n C34 C19 7KC sing 14 n n C31 C32 7KC doub 15 n y C33 C32 7KC sing 16 n y C35 C19 7KC sing 17 n n N18 C19 7KC sing 18 n n N18 C17 7KC sing 19 n n C19 C14 7KC sing 20 n n C17 C13 7KC sing 21 n n C14 C13 7KC doub 22 n y C14 N15 7KC sing 23 n y C13 C12 7KC sing 24 n y N15 N16 7KC sing 25 n y C12 N16 7KC doub 26 n y C12 N10 7KC sing 27 n n C11 C4 7KC sing 28 n n N5 C4 7KC doub 29 n y N5 C6 7KC sing 30 n y C4 N3 7KC sing 31 n y N10 C6 7KC sing 32 n n C6 C1 7KC doub 33 n y N3 C2 7KC doub 34 n y C1 C2 7KC sing 35 n y C1 S7 7KC sing 36 n y C2 C9 7KC sing 37 n y S7 C8 7KC sing 38 n y C9 C8 7KC doub 39 n y C8 H1 7KC sing 40 n n C9 H2 7KC sing 41 n n C11 H3 7KC sing 42 n n C11 H4 7KC sing 43 n n C11 H5 7KC sing 44 n n C24 H6 7KC sing 45 n n C24 H7 7KC sing 46 n n C27 H9 7KC sing 47 n n C27 H10 7KC sing 48 n n C27 H11 7KC sing 49 n n C30 H12 7KC sing 50 n n C31 H13 7KC sing 51 n n C32 H14 7KC sing 52 n n C33 H15 7KC sing 53 n n C34 H16 7KC sing 54 n n C34 H17 7KC sing 55 n n C34 H18 7KC sing 56 n n C35 H19 7KC sing 57 n n C35 H20 7KC sing 58 n n C35 H21 7KC sing 59 n n C29 H22 7KC sing 60 n n C23 H23 7KC sing 61 n n C26 H24 7KC sing 62 n n C26 H25 7KC sing 63 n n C26 H26 7KC sing 64 n n N22 H27 7KC sing 65 n n C17 H28 7KC sing 66 n n C17 H29 7KC sing 67 n n N15 H30 7KC sing 68 n n N10 H31 7KC sing 69 n n # _atom_sites.entry_id 5MAG _atom_sites.fract_transf_matrix[1][1] 0.016345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7KC A 1 401 1 7KC INH . C 3 DMS A 1 402 1 DMS DMS . D 4 GOL A 1 403 1 GOL GOL . E 5 HOH A 1 501 27 HOH HOH . E 5 HOH A 2 502 26 HOH HOH . E 5 HOH A 3 503 9 HOH HOH . E 5 HOH A 4 504 87 HOH HOH . E 5 HOH A 5 505 36 HOH HOH . E 5 HOH A 6 506 11 HOH HOH . E 5 HOH A 7 507 35 HOH HOH . E 5 HOH A 8 508 106 HOH HOH . E 5 HOH A 9 509 34 HOH HOH . E 5 HOH A 10 510 65 HOH HOH . E 5 HOH A 11 511 114 HOH HOH . E 5 HOH A 12 512 52 HOH HOH . E 5 HOH A 13 513 24 HOH HOH . E 5 HOH A 14 514 20 HOH HOH . E 5 HOH A 15 515 4 HOH HOH . E 5 HOH A 16 516 30 HOH HOH . E 5 HOH A 17 517 64 HOH HOH . E 5 HOH A 18 518 112 HOH HOH . E 5 HOH A 19 519 95 HOH HOH . E 5 HOH A 20 520 89 HOH HOH . E 5 HOH A 21 521 6 HOH HOH . E 5 HOH A 22 522 44 HOH HOH . E 5 HOH A 23 523 31 HOH HOH . E 5 HOH A 24 524 117 HOH HOH . E 5 HOH A 25 525 72 HOH HOH . E 5 HOH A 26 526 70 HOH HOH . E 5 HOH A 27 527 8 HOH HOH . E 5 HOH A 28 528 3 HOH HOH . E 5 HOH A 29 529 113 HOH HOH . E 5 HOH A 30 530 41 HOH HOH . E 5 HOH A 31 531 7 HOH HOH . E 5 HOH A 32 532 84 HOH HOH . E 5 HOH A 33 533 66 HOH HOH . E 5 HOH A 34 534 85 HOH HOH . E 5 HOH A 35 535 19 HOH HOH . E 5 HOH A 36 536 54 HOH HOH . E 5 HOH A 37 537 103 HOH HOH . E 5 HOH A 38 538 60 HOH HOH . E 5 HOH A 39 539 45 HOH HOH . E 5 HOH A 40 540 115 HOH HOH . E 5 HOH A 41 541 43 HOH HOH . E 5 HOH A 42 542 32 HOH HOH . E 5 HOH A 43 543 39 HOH HOH . E 5 HOH A 44 544 75 HOH HOH . E 5 HOH A 45 545 46 HOH HOH . E 5 HOH A 46 546 40 HOH HOH . E 5 HOH A 47 547 14 HOH HOH . E 5 HOH A 48 548 55 HOH HOH . E 5 HOH A 49 549 5 HOH HOH . E 5 HOH A 50 550 82 HOH HOH . E 5 HOH A 51 551 97 HOH HOH . E 5 HOH A 52 552 51 HOH HOH . E 5 HOH A 53 553 28 HOH HOH . E 5 HOH A 54 554 59 HOH HOH . E 5 HOH A 55 555 111 HOH HOH . E 5 HOH A 56 556 12 HOH HOH . E 5 HOH A 57 557 74 HOH HOH . E 5 HOH A 58 558 25 HOH HOH . E 5 HOH A 59 559 47 HOH HOH . E 5 HOH A 60 560 2 HOH HOH . E 5 HOH A 61 561 29 HOH HOH . E 5 HOH A 62 562 57 HOH HOH . E 5 HOH A 63 563 21 HOH HOH . E 5 HOH A 64 564 69 HOH HOH . E 5 HOH A 65 565 33 HOH HOH . E 5 HOH A 66 566 79 HOH HOH . E 5 HOH A 67 567 13 HOH HOH . E 5 HOH A 68 568 88 HOH HOH . E 5 HOH A 69 569 18 HOH HOH . E 5 HOH A 70 570 53 HOH HOH . E 5 HOH A 71 571 99 HOH HOH . E 5 HOH A 72 572 50 HOH HOH . E 5 HOH A 73 573 56 HOH HOH . E 5 HOH A 74 574 10 HOH HOH . E 5 HOH A 75 575 62 HOH HOH . E 5 HOH A 76 576 48 HOH HOH . E 5 HOH A 77 577 105 HOH HOH . E 5 HOH A 78 578 93 HOH HOH . E 5 HOH A 79 579 38 HOH HOH . E 5 HOH A 80 580 109 HOH HOH . E 5 HOH A 81 581 116 HOH HOH . E 5 HOH A 82 582 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7KC . . . B 2 -14.781 9.806 -0.96 1 33.14 ? C1 7KC 401 A 1 HETATM 2 C C2 7KC . . . B 2 -14.423 11.068 -0.595 1 32.65 ? C2 7KC 401 A 1 HETATM 3 C C8 7KC . . . B 2 -13.616 9.965 1.235 1 36.22 ? C8 7KC 401 A 1 HETATM 4 C C9 7KC . . . B 2 -13.791 11.141 0.596 1 34.23 ? C9 7KC 401 A 1 HETATM 5 C C11 7KC . . . B 2 -15.616 13.017 -3.426 1 30.42 ? C11 7KC 401 A 1 HETATM 6 C C12 7KC . . . B 2 -16.31 7.981 -3.601 1 28.03 ? C12 7KC 401 A 1 HETATM 7 C C13 7KC . . . B 2 -16.315 8.451 -4.856 1 27.46 ? C13 7KC 401 A 1 HETATM 8 C C14 7KC . . . B 2 -17.125 7.696 -5.608 1 26.86 ? C14 7KC 401 A 1 HETATM 9 N N18 7KC . . . B 2 -16.356 9.362 -7.039 1 27.19 ? N18 7KC 401 A 1 HETATM 10 C C19 7KC . . . B 2 -17.218 8.145 -6.958 1 27.23 ? C19 7KC 401 A 1 HETATM 11 C C20 7KC . . . B 2 -16.165 10.159 -8.093 1 28.37 ? C20 7KC 401 A 1 HETATM 12 C C24 7KC . . . B 2 -13.598 11.963 -9.374 1 37.22 ? C24 7KC 401 A 1 HETATM 13 N N25 7KC . . . B 2 -13.274 12.591 -10.701 1 39.87 ? N25 7KC 401 A 1 HETATM 14 C C27 7KC . . . B 2 -12.088 11.89 -11.244 1 40.82 ? C27 7KC 401 A 1 HETATM 15 C C30 7KC . . . B 2 -16.609 15.448 -8.77 1 36.11 ? C30 7KC 401 A 1 HETATM 16 C C31 7KC . . . B 2 -15.998 15.955 -7.627 1 36.97 ? C31 7KC 401 A 1 HETATM 17 C C32 7KC . . . B 2 -15.059 15.194 -6.934 1 36.79 ? C32 7KC 401 A 1 HETATM 18 C C33 7KC . . . B 2 -14.74 13.918 -7.395 1 35.3 ? C33 7KC 401 A 1 HETATM 19 C C34 7KC . . . B 2 -16.738 7.028 -7.93 1 26.32 ? C34 7KC 401 A 1 HETATM 20 C C35 7KC . . . B 2 -18.68 8.529 -7.266 1 27.2 ? C35 7KC 401 A 1 HETATM 21 C C29 7KC . . . B 2 -16.29 14.174 -9.224 1 34.92 ? C29 7KC 401 A 1 HETATM 22 C C28 7KC . . . B 2 -15.358 13.401 -8.542 1 34.07 ? C28 7KC 401 A 1 HETATM 23 C C23 7KC . . . B 2 -15.059 12.134 -9.023 1 33.71 ? C23 7KC 401 A 1 HETATM 24 C C26 7KC . . . B 2 -12.966 14.055 -10.636 1 41.23 ? C26 7KC 401 A 1 HETATM 25 N N22 7KC . . . B 2 -15.354 11.202 -7.939 1 30.36 ? N22 7KC 401 A 1 HETATM 26 O O21 7KC . . . B 2 -16.747 9.952 -9.158 1 28.13 ? O21 7KC 401 A 1 HETATM 27 C C17 7KC . . . B 2 -15.783 9.539 -5.719 1 27.49 ? C17 7KC 401 A 1 HETATM 28 N N15 7KC . . . B 2 -17.571 6.741 -4.812 1 26.58 ? N15 7KC 401 A 1 HETATM 29 N N16 7KC . . . B 2 -17.074 6.929 -3.6 1 27.16 ? N16 7KC 401 A 1 HETATM 30 N N10 7KC . . . B 2 -15.719 8.315 -2.433 1 29.78 ? N10 7KC 401 A 1 HETATM 31 C C6 7KC . . . B 2 -15.413 9.588 -2.128 1 31.52 ? C6 7KC 401 A 1 HETATM 32 S S7 7KC . . . B 2 -14.28 8.744 0.312 1 33.81 ? S7 7KC 401 A 1 HETATM 33 N N3 7KC . . . B 2 -14.7 12.111 -1.398 1 31.66 ? N3 7KC 401 A 1 HETATM 34 C C4 7KC . . . B 2 -15.324 11.955 -2.576 1 31.74 ? C4 7KC 401 A 1 HETATM 35 N N5 7KC . . . B 2 -15.705 10.681 -2.948 1 31.64 ? N5 7KC 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #