data_5MAG # _model_server_result.job_id g33qC2X884wzYPMNkdKNNg _model_server_result.datetime_utc '2024-12-09 15:52:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5MAG # _exptl.entry_id 5MAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MAG _cell.length_a 61.18 _cell.length_b 62.81 _cell.length_c 94.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 152 n n S C1 DMS sing 153 n n S C2 DMS sing 154 n n C1 H11 DMS sing 155 n n C1 H12 DMS sing 156 n n C1 H13 DMS sing 157 n n C2 H21 DMS sing 158 n n C2 H22 DMS sing 159 n n C2 H23 DMS sing 160 n n # _atom_sites.entry_id 5MAG _atom_sites.fract_transf_matrix[1][1] 0.016345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7KC A 1 401 1 7KC INH . C 3 DMS A 1 402 1 DMS DMS . D 4 GOL A 1 403 1 GOL GOL . E 5 HOH A 1 501 27 HOH HOH . E 5 HOH A 2 502 26 HOH HOH . E 5 HOH A 3 503 9 HOH HOH . E 5 HOH A 4 504 87 HOH HOH . E 5 HOH A 5 505 36 HOH HOH . E 5 HOH A 6 506 11 HOH HOH . E 5 HOH A 7 507 35 HOH HOH . E 5 HOH A 8 508 106 HOH HOH . E 5 HOH A 9 509 34 HOH HOH . E 5 HOH A 10 510 65 HOH HOH . E 5 HOH A 11 511 114 HOH HOH . E 5 HOH A 12 512 52 HOH HOH . E 5 HOH A 13 513 24 HOH HOH . E 5 HOH A 14 514 20 HOH HOH . E 5 HOH A 15 515 4 HOH HOH . E 5 HOH A 16 516 30 HOH HOH . E 5 HOH A 17 517 64 HOH HOH . E 5 HOH A 18 518 112 HOH HOH . E 5 HOH A 19 519 95 HOH HOH . E 5 HOH A 20 520 89 HOH HOH . E 5 HOH A 21 521 6 HOH HOH . E 5 HOH A 22 522 44 HOH HOH . E 5 HOH A 23 523 31 HOH HOH . E 5 HOH A 24 524 117 HOH HOH . E 5 HOH A 25 525 72 HOH HOH . E 5 HOH A 26 526 70 HOH HOH . E 5 HOH A 27 527 8 HOH HOH . E 5 HOH A 28 528 3 HOH HOH . E 5 HOH A 29 529 113 HOH HOH . E 5 HOH A 30 530 41 HOH HOH . E 5 HOH A 31 531 7 HOH HOH . E 5 HOH A 32 532 84 HOH HOH . E 5 HOH A 33 533 66 HOH HOH . E 5 HOH A 34 534 85 HOH HOH . E 5 HOH A 35 535 19 HOH HOH . E 5 HOH A 36 536 54 HOH HOH . E 5 HOH A 37 537 103 HOH HOH . E 5 HOH A 38 538 60 HOH HOH . E 5 HOH A 39 539 45 HOH HOH . E 5 HOH A 40 540 115 HOH HOH . E 5 HOH A 41 541 43 HOH HOH . E 5 HOH A 42 542 32 HOH HOH . E 5 HOH A 43 543 39 HOH HOH . E 5 HOH A 44 544 75 HOH HOH . E 5 HOH A 45 545 46 HOH HOH . E 5 HOH A 46 546 40 HOH HOH . E 5 HOH A 47 547 14 HOH HOH . E 5 HOH A 48 548 55 HOH HOH . E 5 HOH A 49 549 5 HOH HOH . E 5 HOH A 50 550 82 HOH HOH . E 5 HOH A 51 551 97 HOH HOH . E 5 HOH A 52 552 51 HOH HOH . E 5 HOH A 53 553 28 HOH HOH . E 5 HOH A 54 554 59 HOH HOH . E 5 HOH A 55 555 111 HOH HOH . E 5 HOH A 56 556 12 HOH HOH . E 5 HOH A 57 557 74 HOH HOH . E 5 HOH A 58 558 25 HOH HOH . E 5 HOH A 59 559 47 HOH HOH . E 5 HOH A 60 560 2 HOH HOH . E 5 HOH A 61 561 29 HOH HOH . E 5 HOH A 62 562 57 HOH HOH . E 5 HOH A 63 563 21 HOH HOH . E 5 HOH A 64 564 69 HOH HOH . E 5 HOH A 65 565 33 HOH HOH . E 5 HOH A 66 566 79 HOH HOH . E 5 HOH A 67 567 13 HOH HOH . E 5 HOH A 68 568 88 HOH HOH . E 5 HOH A 69 569 18 HOH HOH . E 5 HOH A 70 570 53 HOH HOH . E 5 HOH A 71 571 99 HOH HOH . E 5 HOH A 72 572 50 HOH HOH . E 5 HOH A 73 573 56 HOH HOH . E 5 HOH A 74 574 10 HOH HOH . E 5 HOH A 75 575 62 HOH HOH . E 5 HOH A 76 576 48 HOH HOH . E 5 HOH A 77 577 105 HOH HOH . E 5 HOH A 78 578 93 HOH HOH . E 5 HOH A 79 579 38 HOH HOH . E 5 HOH A 80 580 109 HOH HOH . E 5 HOH A 81 581 116 HOH HOH . E 5 HOH A 82 582 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -21.701 -0.075 -1.359 1 72.36 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 -21.62 1.049 -2.331 1 60.05 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 -21.132 -1.538 -2.041 1 67.19 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 -20.556 0.193 -0.111 1 68.63 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #