data_5MAG # _model_server_result.job_id ZXdbcRXxRyzcWDF1wk9EDA _model_server_result.datetime_utc '2024-12-09 19:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5MAG # _exptl.entry_id 5MAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MAG _cell.length_a 61.18 _cell.length_b 62.81 _cell.length_c 94.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 5MAG _atom_sites.fract_transf_matrix[1][1] 0.016345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7KC A 1 401 1 7KC INH . C 3 DMS A 1 402 1 DMS DMS . D 4 GOL A 1 403 1 GOL GOL . E 5 HOH A 1 501 27 HOH HOH . E 5 HOH A 2 502 26 HOH HOH . E 5 HOH A 3 503 9 HOH HOH . E 5 HOH A 4 504 87 HOH HOH . E 5 HOH A 5 505 36 HOH HOH . E 5 HOH A 6 506 11 HOH HOH . E 5 HOH A 7 507 35 HOH HOH . E 5 HOH A 8 508 106 HOH HOH . E 5 HOH A 9 509 34 HOH HOH . E 5 HOH A 10 510 65 HOH HOH . E 5 HOH A 11 511 114 HOH HOH . E 5 HOH A 12 512 52 HOH HOH . E 5 HOH A 13 513 24 HOH HOH . E 5 HOH A 14 514 20 HOH HOH . E 5 HOH A 15 515 4 HOH HOH . E 5 HOH A 16 516 30 HOH HOH . E 5 HOH A 17 517 64 HOH HOH . E 5 HOH A 18 518 112 HOH HOH . E 5 HOH A 19 519 95 HOH HOH . E 5 HOH A 20 520 89 HOH HOH . E 5 HOH A 21 521 6 HOH HOH . E 5 HOH A 22 522 44 HOH HOH . E 5 HOH A 23 523 31 HOH HOH . E 5 HOH A 24 524 117 HOH HOH . E 5 HOH A 25 525 72 HOH HOH . E 5 HOH A 26 526 70 HOH HOH . E 5 HOH A 27 527 8 HOH HOH . E 5 HOH A 28 528 3 HOH HOH . E 5 HOH A 29 529 113 HOH HOH . E 5 HOH A 30 530 41 HOH HOH . E 5 HOH A 31 531 7 HOH HOH . E 5 HOH A 32 532 84 HOH HOH . E 5 HOH A 33 533 66 HOH HOH . E 5 HOH A 34 534 85 HOH HOH . E 5 HOH A 35 535 19 HOH HOH . E 5 HOH A 36 536 54 HOH HOH . E 5 HOH A 37 537 103 HOH HOH . E 5 HOH A 38 538 60 HOH HOH . E 5 HOH A 39 539 45 HOH HOH . E 5 HOH A 40 540 115 HOH HOH . E 5 HOH A 41 541 43 HOH HOH . E 5 HOH A 42 542 32 HOH HOH . E 5 HOH A 43 543 39 HOH HOH . E 5 HOH A 44 544 75 HOH HOH . E 5 HOH A 45 545 46 HOH HOH . E 5 HOH A 46 546 40 HOH HOH . E 5 HOH A 47 547 14 HOH HOH . E 5 HOH A 48 548 55 HOH HOH . E 5 HOH A 49 549 5 HOH HOH . E 5 HOH A 50 550 82 HOH HOH . E 5 HOH A 51 551 97 HOH HOH . E 5 HOH A 52 552 51 HOH HOH . E 5 HOH A 53 553 28 HOH HOH . E 5 HOH A 54 554 59 HOH HOH . E 5 HOH A 55 555 111 HOH HOH . E 5 HOH A 56 556 12 HOH HOH . E 5 HOH A 57 557 74 HOH HOH . E 5 HOH A 58 558 25 HOH HOH . E 5 HOH A 59 559 47 HOH HOH . E 5 HOH A 60 560 2 HOH HOH . E 5 HOH A 61 561 29 HOH HOH . E 5 HOH A 62 562 57 HOH HOH . E 5 HOH A 63 563 21 HOH HOH . E 5 HOH A 64 564 69 HOH HOH . E 5 HOH A 65 565 33 HOH HOH . E 5 HOH A 66 566 79 HOH HOH . E 5 HOH A 67 567 13 HOH HOH . E 5 HOH A 68 568 88 HOH HOH . E 5 HOH A 69 569 18 HOH HOH . E 5 HOH A 70 570 53 HOH HOH . E 5 HOH A 71 571 99 HOH HOH . E 5 HOH A 72 572 50 HOH HOH . E 5 HOH A 73 573 56 HOH HOH . E 5 HOH A 74 574 10 HOH HOH . E 5 HOH A 75 575 62 HOH HOH . E 5 HOH A 76 576 48 HOH HOH . E 5 HOH A 77 577 105 HOH HOH . E 5 HOH A 78 578 93 HOH HOH . E 5 HOH A 79 579 38 HOH HOH . E 5 HOH A 80 580 109 HOH HOH . E 5 HOH A 81 581 116 HOH HOH . E 5 HOH A 82 582 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -37.433 -2.805 -7.109 1 50.2 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 -37.171 -4.158 -6.702 1 47.69 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 -37.863 -2.841 -8.569 1 51.3 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 -36.793 -3.472 -9.273 1 52.53 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 -38.158 -1.496 -9.232 1 51.86 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 -38.751 -0.544 -8.332 1 52.17 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #