data_5MAH # _model_server_result.job_id e-IIQd7WO1cWOdGBIr3aDA _model_server_result.datetime_utc '2024-10-10 17:10:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5MAH # _exptl.entry_id 5MAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-methyl-4-[[4-[[3-[methyl(methylsulfonyl)amino]pyrazin-2-yl]methylamino]-5-(trifluoromethyl)pyrimidin-2-yl]amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MAH _cell.length_a 59.667 _cell.length_b 63.704 _cell.length_c 90.945 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 F3 N8 O3 S' _chem_comp.formula_weight 510.493 _chem_comp.id 7KD _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-methyl-4-[[4-[[3-[methyl(methylsulfonyl)amino]pyrazin-2-yl]methylamino]-5-(trifluoromethyl)pyrimidin-2-yl]amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 S31 7KD sing 1 n n O35 S31 7KD doub 2 n n S31 O34 7KD doub 3 n n S31 N30 7KD sing 4 n n C32 N30 7KD sing 5 n n N26 C27 7KD doub 6 n y N26 C25 7KD sing 7 n y N30 C25 7KD sing 8 n n F9 C8 7KD sing 9 n n C27 C28 7KD sing 10 n y C25 C24 7KD doub 11 n y F11 C8 7KD sing 12 n n F10 C8 7KD sing 13 n n C8 C1 7KD sing 14 n n C28 N29 7KD doub 15 n y C24 N29 7KD sing 16 n y C24 C23 7KD sing 17 n n N7 C23 7KD sing 18 n n N7 C2 7KD sing 19 n n C1 C2 7KD doub 20 n y C1 C6 7KD sing 21 n y C2 N3 7KD sing 22 n y C6 N5 7KD doub 23 n y N3 C4 7KD doub 24 n y N5 C4 7KD sing 25 n y C4 N12 7KD sing 26 n n C18 C17 7KD doub 27 n y C18 C13 7KD sing 28 n y N12 C13 7KD sing 29 n n C17 C16 7KD sing 30 n y C13 C14 7KD doub 31 n y C16 C19 7KD sing 32 n n C16 C15 7KD doub 33 n y C14 C15 7KD sing 34 n y O21 C19 7KD doub 35 n n C19 N20 7KD sing 36 n n N20 C22 7KD sing 37 n n C14 H1 7KD sing 38 n n C15 H2 7KD sing 39 n n C22 H3 7KD sing 40 n n C22 H4 7KD sing 41 n n C22 H5 7KD sing 42 n n C27 H6 7KD sing 43 n n C32 H7 7KD sing 44 n n C32 H8 7KD sing 45 n n C32 H9 7KD sing 46 n n C33 H10 7KD sing 47 n n C33 H11 7KD sing 48 n n C33 H12 7KD sing 49 n n N20 H13 7KD sing 50 n n C17 H14 7KD sing 51 n n C18 H15 7KD sing 52 n n N12 H16 7KD sing 53 n n C6 H17 7KD sing 54 n n N7 H18 7KD sing 55 n n C23 H19 7KD sing 56 n n C23 H20 7KD sing 57 n n C28 H21 7KD sing 58 n n # _atom_sites.entry_id 5MAH _atom_sites.fract_transf_matrix[1][1] 0.01676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7KD A 1 401 1 7KD INH . C 3 GOL A 1 402 3 GOL GOL . D 4 CL A 1 403 1 CL CL . E 5 NA A 1 404 1 NA NA . F 5 NA A 1 405 2 NA NA . G 6 HOH A 1 501 87 HOH HOH . G 6 HOH A 2 502 105 HOH HOH . G 6 HOH A 3 503 98 HOH HOH . G 6 HOH A 4 504 39 HOH HOH . G 6 HOH A 5 505 71 HOH HOH . G 6 HOH A 6 506 111 HOH HOH . G 6 HOH A 7 507 43 HOH HOH . G 6 HOH A 8 508 96 HOH HOH . G 6 HOH A 9 509 119 HOH HOH . G 6 HOH A 10 510 29 HOH HOH . G 6 HOH A 11 511 106 HOH HOH . G 6 HOH A 12 512 85 HOH HOH . G 6 HOH A 13 513 117 HOH HOH . G 6 HOH A 14 514 35 HOH HOH . G 6 HOH A 15 515 69 HOH HOH . G 6 HOH A 16 516 16 HOH HOH . G 6 HOH A 17 517 121 HOH HOH . G 6 HOH A 18 518 19 HOH HOH . G 6 HOH A 19 519 23 HOH HOH . G 6 HOH A 20 520 54 HOH HOH . G 6 HOH A 21 521 53 HOH HOH . G 6 HOH A 22 522 26 HOH HOH . G 6 HOH A 23 523 60 HOH HOH . G 6 HOH A 24 524 74 HOH HOH . G 6 HOH A 25 525 84 HOH HOH . G 6 HOH A 26 526 62 HOH HOH . G 6 HOH A 27 527 45 HOH HOH . G 6 HOH A 28 528 25 HOH HOH . G 6 HOH A 29 529 52 HOH HOH . G 6 HOH A 30 530 48 HOH HOH . G 6 HOH A 31 531 122 HOH HOH . G 6 HOH A 32 532 103 HOH HOH . G 6 HOH A 33 533 95 HOH HOH . G 6 HOH A 34 534 14 HOH HOH . G 6 HOH A 35 535 80 HOH HOH . G 6 HOH A 36 536 15 HOH HOH . G 6 HOH A 37 537 75 HOH HOH . G 6 HOH A 38 538 102 HOH HOH . G 6 HOH A 39 539 30 HOH HOH . G 6 HOH A 40 540 94 HOH HOH . G 6 HOH A 41 541 12 HOH HOH . G 6 HOH A 42 542 36 HOH HOH . G 6 HOH A 43 543 81 HOH HOH . G 6 HOH A 44 544 27 HOH HOH . G 6 HOH A 45 545 34 HOH HOH . G 6 HOH A 46 546 116 HOH HOH . G 6 HOH A 47 547 123 HOH HOH . G 6 HOH A 48 548 56 HOH HOH . G 6 HOH A 49 549 88 HOH HOH . G 6 HOH A 50 550 99 HOH HOH . G 6 HOH A 51 551 104 HOH HOH . G 6 HOH A 52 552 6 HOH HOH . G 6 HOH A 53 553 107 HOH HOH . G 6 HOH A 54 554 114 HOH HOH . G 6 HOH A 55 555 24 HOH HOH . G 6 HOH A 56 556 97 HOH HOH . G 6 HOH A 57 557 18 HOH HOH . G 6 HOH A 58 558 93 HOH HOH . G 6 HOH A 59 559 90 HOH HOH . G 6 HOH A 60 560 57 HOH HOH . G 6 HOH A 61 561 28 HOH HOH . G 6 HOH A 62 562 13 HOH HOH . G 6 HOH A 63 563 61 HOH HOH . G 6 HOH A 64 564 11 HOH HOH . G 6 HOH A 65 565 92 HOH HOH . G 6 HOH A 66 566 7 HOH HOH . G 6 HOH A 67 567 49 HOH HOH . G 6 HOH A 68 568 5 HOH HOH . G 6 HOH A 69 569 31 HOH HOH . G 6 HOH A 70 570 20 HOH HOH . G 6 HOH A 71 571 51 HOH HOH . G 6 HOH A 72 572 108 HOH HOH . G 6 HOH A 73 573 33 HOH HOH . G 6 HOH A 74 574 83 HOH HOH . G 6 HOH A 75 575 120 HOH HOH . G 6 HOH A 76 576 78 HOH HOH . G 6 HOH A 77 577 89 HOH HOH . G 6 HOH A 78 578 55 HOH HOH . G 6 HOH A 79 579 38 HOH HOH . G 6 HOH A 80 580 46 HOH HOH . G 6 HOH A 81 581 63 HOH HOH . G 6 HOH A 82 582 10 HOH HOH . G 6 HOH A 83 583 32 HOH HOH . G 6 HOH A 84 584 3 HOH HOH . G 6 HOH A 85 585 82 HOH HOH . G 6 HOH A 86 586 91 HOH HOH . G 6 HOH A 87 587 109 HOH HOH . G 6 HOH A 88 588 76 HOH HOH . G 6 HOH A 89 589 41 HOH HOH . G 6 HOH A 90 590 113 HOH HOH . G 6 HOH A 91 591 110 HOH HOH . G 6 HOH A 92 592 101 HOH HOH . G 6 HOH A 93 593 118 HOH HOH . G 6 HOH A 94 594 115 HOH HOH . G 6 HOH A 95 595 86 HOH HOH . G 6 HOH A 96 596 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7KD . . . B 2 -16.205 7.682 -5.579 1 27.89 ? C1 7KD 401 A 1 HETATM 2 C C2 7KD . . . B 2 -15.511 8.836 -5.148 1 27.41 ? C2 7KD 401 A 1 HETATM 3 C C8 7KD . . . B 2 -16.759 7.493 -6.912 1 28.69 ? C8 7KD 401 A 1 HETATM 4 C C13 7KD . . . B 2 -13.893 9.008 -1.257 1 38.29 ? C13 7KD 401 A 1 HETATM 5 C C14 7KD . . . B 2 -13.781 9.041 0.137 1 39.23 ? C14 7KD 401 A 1 HETATM 6 C C15 7KD . . . B 2 -13.105 10.056 0.798 1 41.8 ? C15 7KD 401 A 1 HETATM 7 C C16 7KD . . . B 2 -12.517 11.11 0.1 1 45.74 ? C16 7KD 401 A 1 HETATM 8 C C19 7KD . . . B 2 -11.829 12.158 0.762 1 51.65 ? C19 7KD 401 A 1 HETATM 9 C C22 7KD . . . B 2 -13.81 12.609 2.289 1 55.88 ? C22 7KD 401 A 1 HETATM 10 C C24 7KD . . . B 2 -13.596 11.381 -6.367 1 30.71 ? C24 7KD 401 A 1 HETATM 11 N N26 7KD . . . B 2 -12.216 12.266 -8.113 1 35.15 ? N26 7KD 401 A 1 HETATM 12 C C27 7KD . . . B 2 -11.081 11.639 -7.552 1 31.36 ? C27 7KD 401 A 1 HETATM 13 N N29 7KD . . . B 2 -12.533 10.765 -5.839 1 31.96 ? N29 7KD 401 A 1 HETATM 14 C C32 7KD . . . B 2 -14.315 14.164 -8.462 1 36.05 ? C32 7KD 401 A 1 HETATM 15 C C33 7KD . . . B 2 -13.81 11.645 -10.698 1 37.62 ? C33 7KD 401 A 1 HETATM 16 N N20 7KD . . . B 2 -12.435 12.859 1.769 1 55.07 ? N20 7KD 401 A 1 HETATM 17 O O21 7KD . . . B 2 -10.707 12.49 0.382 1 51.34 ? O21 7KD 401 A 1 HETATM 18 C C17 7KD . . . B 2 -12.601 11.088 -1.295 1 43.48 ? C17 7KD 401 A 1 HETATM 19 C C18 7KD . . . B 2 -13.269 10.055 -1.977 1 40.71 ? C18 7KD 401 A 1 HETATM 20 N N12 7KD . . . B 2 -14.604 7.95 -1.758 1 32.23 ? N12 7KD 401 A 1 HETATM 21 C C4 7KD . . . B 2 -15.123 7.92 -2.993 1 28.9 ? C4 7KD 401 A 1 HETATM 22 N N3 7KD . . . B 2 -15.011 8.902 -3.898 1 26.83 ? N3 7KD 401 A 1 HETATM 23 N N5 7KD . . . B 2 -15.773 6.797 -3.352 1 28.61 ? N5 7KD 401 A 1 HETATM 24 C C6 7KD . . . B 2 -16.304 6.67 -4.634 1 26.64 ? C6 7KD 401 A 1 HETATM 25 F F10 7KD . . . B 2 -17.323 6.264 -7.039 1 28.93 ? F10 7KD 401 A 1 HETATM 26 F F11 7KD . . . B 2 -17.627 8.396 -7.218 1 28.82 ? F11 7KD 401 A 1 HETATM 27 F F9 7KD . . . B 2 -15.762 7.617 -7.875 1 26.93 ? F9 7KD 401 A 1 HETATM 28 N N7 7KD . . . B 2 -15.365 9.859 -6.006 1 28.43 ? N7 7KD 401 A 1 HETATM 29 C C23 7KD . . . B 2 -14.806 11.18 -5.67 1 30.05 ? C23 7KD 401 A 1 HETATM 30 C C28 7KD . . . B 2 -11.251 10.879 -6.414 1 32.69 ? C28 7KD 401 A 1 HETATM 31 C C25 7KD . . . B 2 -13.434 12.153 -7.535 1 33.3 ? C25 7KD 401 A 1 HETATM 32 N N30 7KD . . . B 2 -14.513 12.75 -8.093 1 36.29 ? N30 7KD 401 A 1 HETATM 33 S S31 7KD . . . B 2 -15.049 11.782 -9.423 1 36.43 ? S31 7KD 401 A 1 HETATM 34 O O34 7KD . . . B 2 -15.372 10.405 -8.853 1 37.26 ? O34 7KD 401 A 1 HETATM 35 O O35 7KD . . . B 2 -16.278 12.353 -10.101 1 35.77 ? O35 7KD 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #