data_5MAK
#
_model_server_result.job_id            GxBWkKVHqTSOoI3Ro-L0Vg 
_model_server_result.datetime_utc      '2024-12-23 04:45:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    5MAK 
#
_exptl.entry_id    5MAK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         93.12 
_cell.angle_beta          102.74 
_cell.angle_gamma         94.76 
_cell.entry_id            5MAK 
_cell.length_a            57.96 
_cell.length_b            61.38 
_cell.length_c            89.38 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,J,K 1 1 
C,D,G,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 69 B LEU 64 1_555 A N1 CRO 70 B CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? 
covale ? covale2 A C3 CRO 70 B CRO 66 1_555 A N VAL 71 B VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.106 ? 
covale ? covale3 C C LEU 69 D LEU 64 1_555 C N1 CRO 70 D CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.038 ? 
covale ? covale4 C C3 CRO 70 D CRO 66 1_555 C N VAL 71 D VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     5MAK 
_atom_sites.fract_transf_matrix[1][1]    0.017253 
_atom_sites.fract_transf_matrix[1][2]    0.001435 
_atom_sites.fract_transf_matrix[1][3]    0.00402 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016348 
_atom_sites.fract_transf_matrix[2][3]    0.001226 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CIT A 1 401 1 CIT CIT . 
F 3 CIT A 1 402 2 CIT CIT . 
G 3 CIT C 1 401 3 CIT CIT . 
H 3 CIT C 1 402 4 CIT CIT . 
I 3 CIT C 1 403 5 CIT CIT . 
J 4 HOH B 1 301 24 HOH HOH . 
J 4 HOH B 2 302 110 HOH HOH . 
J 4 HOH B 3 303 118 HOH HOH . 
J 4 HOH B 4 304 156 HOH HOH . 
J 4 HOH B 5 305 7 HOH HOH . 
J 4 HOH B 6 306 64 HOH HOH . 
J 4 HOH B 7 307 16 HOH HOH . 
J 4 HOH B 8 308 152 HOH HOH . 
J 4 HOH B 9 309 124 HOH HOH . 
J 4 HOH B 10 310 161 HOH HOH . 
J 4 HOH B 11 311 167 HOH HOH . 
J 4 HOH B 12 312 100 HOH HOH . 
J 4 HOH B 13 313 137 HOH HOH . 
J 4 HOH B 14 314 53 HOH HOH . 
J 4 HOH B 15 315 169 HOH HOH . 
J 4 HOH B 16 316 135 HOH HOH . 
J 4 HOH B 17 317 145 HOH HOH . 
J 4 HOH B 18 318 119 HOH HOH . 
J 4 HOH B 19 319 62 HOH HOH . 
J 4 HOH B 20 320 34 HOH HOH . 
J 4 HOH B 21 321 68 HOH HOH . 
J 4 HOH B 22 322 20 HOH HOH . 
J 4 HOH B 23 323 42 HOH HOH . 
J 4 HOH B 24 324 95 HOH HOH . 
J 4 HOH B 25 325 43 HOH HOH . 
J 4 HOH B 26 326 51 HOH HOH . 
J 4 HOH B 27 327 160 HOH HOH . 
J 4 HOH B 28 328 39 HOH HOH . 
J 4 HOH B 29 329 70 HOH HOH . 
J 4 HOH B 30 330 96 HOH HOH . 
J 4 HOH B 31 331 136 HOH HOH . 
J 4 HOH B 32 332 104 HOH HOH . 
J 4 HOH B 33 333 86 HOH HOH . 
J 4 HOH B 34 334 142 HOH HOH . 
J 4 HOH B 35 335 26 HOH HOH . 
J 4 HOH B 36 336 14 HOH HOH . 
J 4 HOH B 37 337 117 HOH HOH . 
J 4 HOH B 38 338 13 HOH HOH . 
J 4 HOH B 39 339 115 HOH HOH . 
J 4 HOH B 40 340 25 HOH HOH . 
J 4 HOH B 41 341 141 HOH HOH . 
J 4 HOH B 42 342 99 HOH HOH . 
J 4 HOH B 43 343 163 HOH HOH . 
J 4 HOH B 44 344 60 HOH HOH . 
J 4 HOH B 45 345 166 HOH HOH . 
J 4 HOH B 46 346 102 HOH HOH . 
J 4 HOH B 47 347 85 HOH HOH . 
J 4 HOH B 48 348 164 HOH HOH . 
K 4 HOH A 1 501 120 HOH HOH . 
K 4 HOH A 2 502 23 HOH HOH . 
K 4 HOH A 3 503 125 HOH HOH . 
K 4 HOH A 4 504 109 HOH HOH . 
K 4 HOH A 5 505 101 HOH HOH . 
K 4 HOH A 6 506 173 HOH HOH . 
K 4 HOH A 7 507 72 HOH HOH . 
K 4 HOH A 8 508 9 HOH HOH . 
K 4 HOH A 9 509 108 HOH HOH . 
K 4 HOH A 10 510 57 HOH HOH . 
K 4 HOH A 11 511 55 HOH HOH . 
K 4 HOH A 12 512 66 HOH HOH . 
K 4 HOH A 13 513 46 HOH HOH . 
K 4 HOH A 14 514 133 HOH HOH . 
K 4 HOH A 15 515 38 HOH HOH . 
K 4 HOH A 16 516 63 HOH HOH . 
K 4 HOH A 17 517 76 HOH HOH . 
K 4 HOH A 18 518 50 HOH HOH . 
K 4 HOH A 19 519 122 HOH HOH . 
K 4 HOH A 20 520 19 HOH HOH . 
K 4 HOH A 21 521 33 HOH HOH . 
K 4 HOH A 22 522 147 HOH HOH . 
K 4 HOH A 23 523 61 HOH HOH . 
K 4 HOH A 24 524 22 HOH HOH . 
K 4 HOH A 25 525 17 HOH HOH . 
K 4 HOH A 26 526 103 HOH HOH . 
K 4 HOH A 27 527 80 HOH HOH . 
K 4 HOH A 28 528 18 HOH HOH . 
K 4 HOH A 29 529 54 HOH HOH . 
K 4 HOH A 30 530 107 HOH HOH . 
K 4 HOH A 31 531 10 HOH HOH . 
K 4 HOH A 32 532 132 HOH HOH . 
K 4 HOH A 33 533 5 HOH HOH . 
K 4 HOH A 34 534 78 HOH HOH . 
K 4 HOH A 35 535 162 HOH HOH . 
K 4 HOH A 36 536 165 HOH HOH . 
K 4 HOH A 37 537 47 HOH HOH . 
K 4 HOH A 38 538 172 HOH HOH . 
L 4 HOH D 1 301 74 HOH HOH . 
L 4 HOH D 2 302 143 HOH HOH . 
L 4 HOH D 3 303 91 HOH HOH . 
L 4 HOH D 4 304 8 HOH HOH . 
L 4 HOH D 5 305 116 HOH HOH . 
L 4 HOH D 6 306 41 HOH HOH . 
L 4 HOH D 7 307 12 HOH HOH . 
L 4 HOH D 8 308 29 HOH HOH . 
L 4 HOH D 9 309 69 HOH HOH . 
L 4 HOH D 10 310 37 HOH HOH . 
L 4 HOH D 11 311 97 HOH HOH . 
L 4 HOH D 12 312 36 HOH HOH . 
L 4 HOH D 13 313 131 HOH HOH . 
L 4 HOH D 14 314 114 HOH HOH . 
L 4 HOH D 15 315 144 HOH HOH . 
L 4 HOH D 16 316 75 HOH HOH . 
L 4 HOH D 17 317 139 HOH HOH . 
L 4 HOH D 18 318 48 HOH HOH . 
L 4 HOH D 19 319 88 HOH HOH . 
L 4 HOH D 20 320 94 HOH HOH . 
L 4 HOH D 21 321 159 HOH HOH . 
L 4 HOH D 22 322 153 HOH HOH . 
L 4 HOH D 23 323 154 HOH HOH . 
L 4 HOH D 24 324 126 HOH HOH . 
L 4 HOH D 25 325 168 HOH HOH . 
L 4 HOH D 26 326 98 HOH HOH . 
L 4 HOH D 27 327 6 HOH HOH . 
L 4 HOH D 28 328 113 HOH HOH . 
L 4 HOH D 29 329 84 HOH HOH . 
L 4 HOH D 30 330 171 HOH HOH . 
L 4 HOH D 31 331 170 HOH HOH . 
L 4 HOH D 32 332 44 HOH HOH . 
M 4 HOH C 1 501 15 HOH HOH . 
M 4 HOH C 2 502 81 HOH HOH . 
M 4 HOH C 3 503 40 HOH HOH . 
M 4 HOH C 4 504 93 HOH HOH . 
M 4 HOH C 5 505 127 HOH HOH . 
M 4 HOH C 6 506 45 HOH HOH . 
M 4 HOH C 7 507 32 HOH HOH . 
M 4 HOH C 8 508 27 HOH HOH . 
M 4 HOH C 9 509 112 HOH HOH . 
M 4 HOH C 10 510 138 HOH HOH . 
M 4 HOH C 11 511 11 HOH HOH . 
M 4 HOH C 12 512 56 HOH HOH . 
M 4 HOH C 13 513 4 HOH HOH . 
M 4 HOH C 14 514 77 HOH HOH . 
M 4 HOH C 15 515 65 HOH HOH . 
M 4 HOH C 16 516 52 HOH HOH . 
M 4 HOH C 17 517 111 HOH HOH . 
M 4 HOH C 18 518 89 HOH HOH . 
M 4 HOH C 19 519 1 HOH HOH . 
M 4 HOH C 20 520 73 HOH HOH . 
M 4 HOH C 21 521 67 HOH HOH . 
M 4 HOH C 22 522 31 HOH HOH . 
M 4 HOH C 23 523 49 HOH HOH . 
M 4 HOH C 24 524 71 HOH HOH . 
M 4 HOH C 25 525 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . G 3 -6.718 31.076 70.816 1 74.75 ? C1 CIT 401 C 1 
HETATM 2 O O1 CIT . . . G 3 -6.973 32.262 70.522 1 74.41 ? O1 CIT 401 C 1 
HETATM 3 O O2 CIT . . . G 3 -5.525 30.721 70.913 1 74.13 ? O2 CIT 401 C 1 
HETATM 4 C C2 CIT . . . G 3 -7.833 30.088 71.064 1 76.25 ? C2 CIT 401 C 1 
HETATM 5 C C3 CIT . . . G 3 -8.168 29.309 69.793 1 77.38 ? C3 CIT 401 C 1 
HETATM 6 O O7 CIT . . . G 3 -7.001 28.524 69.441 1 78.31 ? O7 CIT 401 C 1 
HETATM 7 C C4 CIT . . . G 3 -9.32 28.342 70.063 1 78.17 ? C4 CIT 401 C 1 
HETATM 8 C C5 CIT . . . G 3 -9 26.998 69.451 1 77.46 ? C5 CIT 401 C 1 
HETATM 9 O O3 CIT . . . G 3 -9.721 26.521 68.546 1 76.97 ? O3 CIT 401 C 1 
HETATM 10 O O4 CIT . . . G 3 -8.002 26.353 69.837 1 77.31 ? O4 CIT 401 C 1 
HETATM 11 C C6 CIT . . . G 3 -8.491 30.257 68.639 1 77.62 ? C6 CIT 401 C 1 
HETATM 12 O O5 CIT . . . G 3 -9.573 30.152 68.022 1 77.2 ? O5 CIT 401 C 1 
HETATM 13 O O6 CIT . . . G 3 -7.69 31.15 68.28 1 77.47 ? O6 CIT 401 C 1 
HETATM 14 H H21 CIT . . . G 3 -7.535 29.393 71.848 1 91.62 ? H21 CIT 401 C 1 
HETATM 15 H H22 CIT . . . G 3 -8.72 30.621 71.407 1 91.62 ? H22 CIT 401 C 1 
HETATM 16 H HO7 CIT . . . G 3 -6.691 28.782 68.548 1 94.09 ? HO7 CIT 401 C 1 
HETATM 17 H H41 CIT . . . G 3 -10.241 28.735 69.632 1 93.92 ? H41 CIT 401 C 1 
HETATM 18 H H42 CIT . . . G 3 -9.466 28.233 71.138 1 93.92 ? H42 CIT 401 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#