data_5MAK # _model_server_result.job_id gDu7QZXeCBb3Ak4nfclQAA _model_server_result.datetime_utc '2024-12-23 04:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 5MAK # _exptl.entry_id 5MAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.12 _cell.angle_beta 102.74 _cell.angle_gamma 94.76 _cell.entry_id 5MAK _cell.length_a 57.96 _cell.length_b 61.38 _cell.length_c 89.38 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 69 B LEU 64 1_555 A N1 CRO 70 B CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? covale ? covale2 A C3 CRO 70 B CRO 66 1_555 A N VAL 71 B VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.106 ? covale ? covale3 C C LEU 69 D LEU 64 1_555 C N1 CRO 70 D CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.038 ? covale ? covale4 C C3 CRO 70 D CRO 66 1_555 C N VAL 71 D VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5MAK _atom_sites.fract_transf_matrix[1][1] 0.017253 _atom_sites.fract_transf_matrix[1][2] 0.001435 _atom_sites.fract_transf_matrix[1][3] 0.00402 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016348 _atom_sites.fract_transf_matrix[2][3] 0.001226 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CIT A 1 401 1 CIT CIT . F 3 CIT A 1 402 2 CIT CIT . G 3 CIT C 1 401 3 CIT CIT . H 3 CIT C 1 402 4 CIT CIT . I 3 CIT C 1 403 5 CIT CIT . J 4 HOH B 1 301 24 HOH HOH . J 4 HOH B 2 302 110 HOH HOH . J 4 HOH B 3 303 118 HOH HOH . J 4 HOH B 4 304 156 HOH HOH . J 4 HOH B 5 305 7 HOH HOH . J 4 HOH B 6 306 64 HOH HOH . J 4 HOH B 7 307 16 HOH HOH . J 4 HOH B 8 308 152 HOH HOH . J 4 HOH B 9 309 124 HOH HOH . J 4 HOH B 10 310 161 HOH HOH . J 4 HOH B 11 311 167 HOH HOH . J 4 HOH B 12 312 100 HOH HOH . J 4 HOH B 13 313 137 HOH HOH . J 4 HOH B 14 314 53 HOH HOH . J 4 HOH B 15 315 169 HOH HOH . J 4 HOH B 16 316 135 HOH HOH . J 4 HOH B 17 317 145 HOH HOH . J 4 HOH B 18 318 119 HOH HOH . J 4 HOH B 19 319 62 HOH HOH . J 4 HOH B 20 320 34 HOH HOH . J 4 HOH B 21 321 68 HOH HOH . J 4 HOH B 22 322 20 HOH HOH . J 4 HOH B 23 323 42 HOH HOH . J 4 HOH B 24 324 95 HOH HOH . J 4 HOH B 25 325 43 HOH HOH . J 4 HOH B 26 326 51 HOH HOH . J 4 HOH B 27 327 160 HOH HOH . J 4 HOH B 28 328 39 HOH HOH . J 4 HOH B 29 329 70 HOH HOH . J 4 HOH B 30 330 96 HOH HOH . J 4 HOH B 31 331 136 HOH HOH . J 4 HOH B 32 332 104 HOH HOH . J 4 HOH B 33 333 86 HOH HOH . J 4 HOH B 34 334 142 HOH HOH . J 4 HOH B 35 335 26 HOH HOH . J 4 HOH B 36 336 14 HOH HOH . J 4 HOH B 37 337 117 HOH HOH . J 4 HOH B 38 338 13 HOH HOH . J 4 HOH B 39 339 115 HOH HOH . J 4 HOH B 40 340 25 HOH HOH . J 4 HOH B 41 341 141 HOH HOH . J 4 HOH B 42 342 99 HOH HOH . J 4 HOH B 43 343 163 HOH HOH . J 4 HOH B 44 344 60 HOH HOH . J 4 HOH B 45 345 166 HOH HOH . J 4 HOH B 46 346 102 HOH HOH . J 4 HOH B 47 347 85 HOH HOH . J 4 HOH B 48 348 164 HOH HOH . K 4 HOH A 1 501 120 HOH HOH . K 4 HOH A 2 502 23 HOH HOH . K 4 HOH A 3 503 125 HOH HOH . K 4 HOH A 4 504 109 HOH HOH . K 4 HOH A 5 505 101 HOH HOH . K 4 HOH A 6 506 173 HOH HOH . K 4 HOH A 7 507 72 HOH HOH . K 4 HOH A 8 508 9 HOH HOH . K 4 HOH A 9 509 108 HOH HOH . K 4 HOH A 10 510 57 HOH HOH . K 4 HOH A 11 511 55 HOH HOH . K 4 HOH A 12 512 66 HOH HOH . K 4 HOH A 13 513 46 HOH HOH . K 4 HOH A 14 514 133 HOH HOH . K 4 HOH A 15 515 38 HOH HOH . K 4 HOH A 16 516 63 HOH HOH . K 4 HOH A 17 517 76 HOH HOH . K 4 HOH A 18 518 50 HOH HOH . K 4 HOH A 19 519 122 HOH HOH . K 4 HOH A 20 520 19 HOH HOH . K 4 HOH A 21 521 33 HOH HOH . K 4 HOH A 22 522 147 HOH HOH . K 4 HOH A 23 523 61 HOH HOH . K 4 HOH A 24 524 22 HOH HOH . K 4 HOH A 25 525 17 HOH HOH . K 4 HOH A 26 526 103 HOH HOH . K 4 HOH A 27 527 80 HOH HOH . K 4 HOH A 28 528 18 HOH HOH . K 4 HOH A 29 529 54 HOH HOH . K 4 HOH A 30 530 107 HOH HOH . K 4 HOH A 31 531 10 HOH HOH . K 4 HOH A 32 532 132 HOH HOH . K 4 HOH A 33 533 5 HOH HOH . K 4 HOH A 34 534 78 HOH HOH . K 4 HOH A 35 535 162 HOH HOH . K 4 HOH A 36 536 165 HOH HOH . K 4 HOH A 37 537 47 HOH HOH . K 4 HOH A 38 538 172 HOH HOH . L 4 HOH D 1 301 74 HOH HOH . L 4 HOH D 2 302 143 HOH HOH . L 4 HOH D 3 303 91 HOH HOH . L 4 HOH D 4 304 8 HOH HOH . L 4 HOH D 5 305 116 HOH HOH . L 4 HOH D 6 306 41 HOH HOH . L 4 HOH D 7 307 12 HOH HOH . L 4 HOH D 8 308 29 HOH HOH . L 4 HOH D 9 309 69 HOH HOH . L 4 HOH D 10 310 37 HOH HOH . L 4 HOH D 11 311 97 HOH HOH . L 4 HOH D 12 312 36 HOH HOH . L 4 HOH D 13 313 131 HOH HOH . L 4 HOH D 14 314 114 HOH HOH . L 4 HOH D 15 315 144 HOH HOH . L 4 HOH D 16 316 75 HOH HOH . L 4 HOH D 17 317 139 HOH HOH . L 4 HOH D 18 318 48 HOH HOH . L 4 HOH D 19 319 88 HOH HOH . L 4 HOH D 20 320 94 HOH HOH . L 4 HOH D 21 321 159 HOH HOH . L 4 HOH D 22 322 153 HOH HOH . L 4 HOH D 23 323 154 HOH HOH . L 4 HOH D 24 324 126 HOH HOH . L 4 HOH D 25 325 168 HOH HOH . L 4 HOH D 26 326 98 HOH HOH . L 4 HOH D 27 327 6 HOH HOH . L 4 HOH D 28 328 113 HOH HOH . L 4 HOH D 29 329 84 HOH HOH . L 4 HOH D 30 330 171 HOH HOH . L 4 HOH D 31 331 170 HOH HOH . L 4 HOH D 32 332 44 HOH HOH . M 4 HOH C 1 501 15 HOH HOH . M 4 HOH C 2 502 81 HOH HOH . M 4 HOH C 3 503 40 HOH HOH . M 4 HOH C 4 504 93 HOH HOH . M 4 HOH C 5 505 127 HOH HOH . M 4 HOH C 6 506 45 HOH HOH . M 4 HOH C 7 507 32 HOH HOH . M 4 HOH C 8 508 27 HOH HOH . M 4 HOH C 9 509 112 HOH HOH . M 4 HOH C 10 510 138 HOH HOH . M 4 HOH C 11 511 11 HOH HOH . M 4 HOH C 12 512 56 HOH HOH . M 4 HOH C 13 513 4 HOH HOH . M 4 HOH C 14 514 77 HOH HOH . M 4 HOH C 15 515 65 HOH HOH . M 4 HOH C 16 516 52 HOH HOH . M 4 HOH C 17 517 111 HOH HOH . M 4 HOH C 18 518 89 HOH HOH . M 4 HOH C 19 519 1 HOH HOH . M 4 HOH C 20 520 73 HOH HOH . M 4 HOH C 21 521 67 HOH HOH . M 4 HOH C 22 522 31 HOH HOH . M 4 HOH C 23 523 49 HOH HOH . M 4 HOH C 24 524 71 HOH HOH . M 4 HOH C 25 525 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 3 -5.985 42.13 66.824 1 93.63 ? C1 CIT 402 C 1 HETATM 2 O O1 CIT . . . H 3 -6.72 43.038 67.272 1 94.04 ? O1 CIT 402 C 1 HETATM 3 O O2 CIT . . . H 3 -5.057 41.686 67.534 1 93.9 ? O2 CIT 402 C 1 HETATM 4 C C2 CIT . . . H 3 -6.209 41.569 65.439 1 92.62 ? C2 CIT 402 C 1 HETATM 5 C C3 CIT . . . H 3 -7.538 40.816 65.388 1 91.58 ? C3 CIT 402 C 1 HETATM 6 O O7 CIT . . . H 3 -8.559 41.724 65.873 1 91.5 ? O7 CIT 402 C 1 HETATM 7 C C4 CIT . . . H 3 -7.934 40.398 63.972 1 91.61 ? C4 CIT 402 C 1 HETATM 8 C C5 CIT . . . H 3 -6.713 40.171 63.114 1 91.31 ? C5 CIT 402 C 1 HETATM 9 O O3 CIT . . . H 3 -6.323 41.057 62.324 1 91.64 ? O3 CIT 402 C 1 HETATM 10 O O4 CIT . . . H 3 -6.079 39.095 63.18 1 91.52 ? O4 CIT 402 C 1 HETATM 11 C C6 CIT . . . H 3 -7.507 39.616 66.328 1 90.91 ? C6 CIT 402 C 1 HETATM 12 O O5 CIT . . . H 3 -7.772 38.471 65.902 1 90.54 ? O5 CIT 402 C 1 HETATM 13 O O6 CIT . . . H 3 -7.205 39.749 67.534 1 90.61 ? O6 CIT 402 C 1 HETATM 14 H H21 CIT . . . H 3 -6.219 42.381 64.712 1 111.26 ? H21 CIT 402 C 1 HETATM 15 H H22 CIT . . . H 3 -5.394 40.894 65.181 1 111.26 ? H22 CIT 402 C 1 HETATM 16 H HO7 CIT . . . H 3 -8.976 41.348 66.677 1 109.92 ? HO7 CIT 402 C 1 HETATM 17 H H41 CIT . . . H 3 -8.554 41.174 63.524 1 110.05 ? H41 CIT 402 C 1 HETATM 18 H H42 CIT . . . H 3 -8.523 39.481 64.014 1 110.05 ? H42 CIT 402 C 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #