data_5MAQ
#
_model_server_result.job_id            Y5dG9YeiJuV4Vd4A8IyJag 
_model_server_result.datetime_utc      '2024-11-23 02:22:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5maq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1001}' 
#
_entry.id    5MAQ 
#
_exptl.entry_id    5MAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MAQ 
_cell.length_a            166.159 
_cell.length_b            166.159 
_cell.length_c            94.985 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 L N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O3B ADP . A ADP 1001 1_555 G MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc2 F O31 PPV . A PPV 1002 1_555 G MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 B OD1 ASP 86 B ASP 66 1_555 K MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? 
metalc ? metalc4 H O2B ADP . B ADP 1001 1_555 J MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc5 H O3B ADP . B ADP 1001 1_555 J MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc6 H O3B ADP . B ADP 1001 1_555 K MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc7 I O21 PPV . B PPV 1002 1_555 J MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc8 N O1B ADP . D ADP 1001 1_555 P MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc9 N O3B ADP . D ADP 1001 1_555 P MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? 
metalc ? metalc10 O O21 PPV . D PPV 1002 1_555 P MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5MAQ 
_atom_sites.fract_transf_matrix[1][1]    0.006018 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADP A 1 1001 1001 ADP ADP . 
F 3 PPV A 1 1002 1002 PPV PPV . 
G 4 MG A 1 1003 1003 MG MG . 
H 2 ADP B 1 1001 1001 ADP ADP . 
I 3 PPV B 1 1002 1002 PPV PPV . 
J 4 MG B 1 1003 1003 MG MG . 
K 4 MG B 1 1004 1 MG MG . 
L 2 ADP C 1 1001 1001 ADP ADP . 
M 3 PPV C 1 1002 1002 PPV PPV . 
N 2 ADP D 1 1001 1001 ADP ADP . 
O 3 PPV D 1 1002 1002 PPV PPV . 
P 4 MG D 1 1003 1003 MG MG . 
Q 5 HOH A 1 1101 8 HOH HOH . 
Q 5 HOH A 2 1102 21 HOH HOH . 
Q 5 HOH A 3 1103 34 HOH HOH . 
Q 5 HOH A 4 1104 24 HOH HOH . 
Q 5 HOH A 5 1105 10 HOH HOH . 
Q 5 HOH A 6 1106 111 HOH HOH . 
Q 5 HOH A 7 1107 40 HOH HOH . 
Q 5 HOH A 8 1108 80 HOH HOH . 
Q 5 HOH A 9 1109 31 HOH HOH . 
Q 5 HOH A 10 1110 116 HOH HOH . 
Q 5 HOH A 11 1111 7 HOH HOH . 
Q 5 HOH A 12 1112 37 HOH HOH . 
Q 5 HOH A 13 1113 20 HOH HOH . 
Q 5 HOH A 14 1114 86 HOH HOH . 
Q 5 HOH A 15 1115 23 HOH HOH . 
Q 5 HOH A 16 1116 53 HOH HOH . 
Q 5 HOH A 17 1117 62 HOH HOH . 
Q 5 HOH A 18 1118 13 HOH HOH . 
Q 5 HOH A 19 1119 92 HOH HOH . 
Q 5 HOH A 20 1120 96 HOH HOH . 
Q 5 HOH A 21 1121 97 HOH HOH . 
Q 5 HOH A 22 1122 121 HOH HOH . 
Q 5 HOH A 23 1123 17 HOH HOH . 
Q 5 HOH A 24 1124 102 HOH HOH . 
Q 5 HOH A 25 1125 91 HOH HOH . 
Q 5 HOH A 26 1126 59 HOH HOH . 
Q 5 HOH A 27 1127 73 HOH HOH . 
Q 5 HOH A 28 1128 78 HOH HOH . 
Q 5 HOH A 29 1129 33 HOH HOH . 
Q 5 HOH A 30 1130 99 HOH HOH . 
Q 5 HOH A 31 1131 46 HOH HOH . 
Q 5 HOH A 32 1132 110 HOH HOH . 
Q 5 HOH A 33 1133 123 HOH HOH . 
Q 5 HOH A 34 1134 4 HOH HOH . 
Q 5 HOH A 35 1135 122 HOH HOH . 
Q 5 HOH A 36 1136 60 HOH HOH . 
Q 5 HOH A 37 1137 81 HOH HOH . 
Q 5 HOH A 38 1138 27 HOH HOH . 
Q 5 HOH A 39 1139 109 HOH HOH . 
Q 5 HOH A 40 1140 100 HOH HOH . 
Q 5 HOH A 41 1141 117 HOH HOH . 
Q 5 HOH A 42 1142 120 HOH HOH . 
Q 5 HOH A 43 1143 36 HOH HOH . 
Q 5 HOH A 44 1144 26 HOH HOH . 
Q 5 HOH A 45 1145 118 HOH HOH . 
Q 5 HOH A 46 1146 90 HOH HOH . 
R 5 HOH B 1 1101 11 HOH HOH . 
R 5 HOH B 2 1102 42 HOH HOH . 
R 5 HOH B 3 1103 63 HOH HOH . 
R 5 HOH B 4 1104 72 HOH HOH . 
R 5 HOH B 5 1105 5 HOH HOH . 
R 5 HOH B 6 1106 71 HOH HOH . 
R 5 HOH B 7 1107 55 HOH HOH . 
R 5 HOH B 8 1108 35 HOH HOH . 
R 5 HOH B 9 1109 18 HOH HOH . 
R 5 HOH B 10 1110 75 HOH HOH . 
R 5 HOH B 11 1111 41 HOH HOH . 
R 5 HOH B 12 1112 103 HOH HOH . 
R 5 HOH B 13 1113 87 HOH HOH . 
R 5 HOH B 14 1114 64 HOH HOH . 
R 5 HOH B 15 1115 108 HOH HOH . 
R 5 HOH B 16 1116 107 HOH HOH . 
R 5 HOH B 17 1117 25 HOH HOH . 
R 5 HOH B 18 1118 51 HOH HOH . 
R 5 HOH B 19 1119 56 HOH HOH . 
R 5 HOH B 20 1120 39 HOH HOH . 
R 5 HOH B 21 1121 74 HOH HOH . 
R 5 HOH B 22 1122 77 HOH HOH . 
R 5 HOH B 23 1123 30 HOH HOH . 
R 5 HOH B 24 1124 3 HOH HOH . 
R 5 HOH B 25 1125 131 HOH HOH . 
R 5 HOH B 26 1126 114 HOH HOH . 
R 5 HOH B 27 1127 94 HOH HOH . 
R 5 HOH B 28 1128 105 HOH HOH . 
R 5 HOH B 29 1129 14 HOH HOH . 
R 5 HOH B 30 1130 52 HOH HOH . 
R 5 HOH B 31 1131 16 HOH HOH . 
R 5 HOH B 32 1132 28 HOH HOH . 
R 5 HOH B 33 1133 82 HOH HOH . 
R 5 HOH B 34 1134 61 HOH HOH . 
R 5 HOH B 35 1135 2 HOH HOH . 
R 5 HOH B 36 1136 58 HOH HOH . 
R 5 HOH B 37 1137 50 HOH HOH . 
R 5 HOH B 38 1138 48 HOH HOH . 
R 5 HOH B 39 1139 66 HOH HOH . 
R 5 HOH B 40 1140 98 HOH HOH . 
R 5 HOH B 41 1141 104 HOH HOH . 
S 5 HOH C 1 1101 32 HOH HOH . 
S 5 HOH C 2 1102 129 HOH HOH . 
S 5 HOH C 3 1103 6 HOH HOH . 
S 5 HOH C 4 1104 130 HOH HOH . 
S 5 HOH C 5 1105 113 HOH HOH . 
S 5 HOH C 6 1106 45 HOH HOH . 
S 5 HOH C 7 1107 127 HOH HOH . 
S 5 HOH C 8 1108 76 HOH HOH . 
S 5 HOH C 9 1109 44 HOH HOH . 
S 5 HOH C 10 1110 68 HOH HOH . 
S 5 HOH C 11 1111 112 HOH HOH . 
S 5 HOH C 12 1112 83 HOH HOH . 
S 5 HOH C 13 1113 93 HOH HOH . 
S 5 HOH C 14 1114 47 HOH HOH . 
S 5 HOH C 15 1115 9 HOH HOH . 
T 5 HOH D 1 1101 1 HOH HOH . 
T 5 HOH D 2 1102 67 HOH HOH . 
T 5 HOH D 3 1103 132 HOH HOH . 
T 5 HOH D 4 1104 85 HOH HOH . 
T 5 HOH D 5 1105 12 HOH HOH . 
T 5 HOH D 6 1106 115 HOH HOH . 
T 5 HOH D 7 1107 15 HOH HOH . 
T 5 HOH D 8 1108 84 HOH HOH . 
T 5 HOH D 9 1109 70 HOH HOH . 
T 5 HOH D 10 1110 79 HOH HOH . 
T 5 HOH D 11 1111 125 HOH HOH . 
T 5 HOH D 12 1112 38 HOH HOH . 
T 5 HOH D 13 1113 19 HOH HOH . 
T 5 HOH D 14 1114 54 HOH HOH . 
T 5 HOH D 15 1115 29 HOH HOH . 
T 5 HOH D 16 1116 49 HOH HOH . 
T 5 HOH D 17 1117 95 HOH HOH . 
T 5 HOH D 18 1118 134 HOH HOH . 
T 5 HOH D 19 1119 126 HOH HOH . 
T 5 HOH D 20 1120 106 HOH HOH . 
T 5 HOH D 21 1121 128 HOH HOH . 
T 5 HOH D 22 1122 65 HOH HOH . 
T 5 HOH D 23 1123 124 HOH HOH . 
T 5 HOH D 24 1124 119 HOH HOH . 
T 5 HOH D 25 1125 101 HOH HOH . 
T 5 HOH D 26 1126 43 HOH HOH . 
T 5 HOH D 27 1127 89 HOH HOH . 
T 5 HOH D 28 1128 88 HOH HOH . 
T 5 HOH D 29 1129 57 HOH HOH . 
T 5 HOH D 30 1130 22 HOH HOH . 
T 5 HOH D 31 1131 69 HOH HOH . 
T 5 HOH D 32 1132 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 2 48.088 -18.111 22.74 1 68.98 ? PB ADP 1001 B 1 
HETATM 2 O O1B ADP . . . H 2 49.566 -17.938 22.588 1 64.1 ? O1B ADP 1001 B 1 
HETATM 3 O O2B ADP . . . H 2 47.455 -17.259 23.866 1 67.35 ? O2B ADP 1001 B 1 
HETATM 4 O O3B ADP . . . H 2 47.723 -19.603 22.944 1 74.59 ? O3B ADP 1001 B 1 
HETATM 5 P PA ADP . . . H 2 46.507 -18.467 20.324 1 70.69 ? PA ADP 1001 B 1 
HETATM 6 O O1A ADP . . . H 2 45.483 -17.529 19.576 1 73.33 ? O1A ADP 1001 B 1 
HETATM 7 O O2A ADP . . . H 2 45.904 -19.704 20.901 1 69.66 ? O2A ADP 1001 B 1 
HETATM 8 O O3A ADP . . . H 2 47.278 -17.65 21.452 1 70.44 ? O3A ADP 1001 B 1 
HETATM 9 O O5' ADP . . . H 2 47.683 -18.75 19.318 1 62.61 ? O5' ADP 1001 B 1 
HETATM 10 C C5' ADP . . . H 2 48.379 -17.76 18.541 1 52.14 ? C5' ADP 1001 B 1 
HETATM 11 C C4' ADP . . . H 2 49.394 -18.525 17.737 1 42.31 ? C4' ADP 1001 B 1 
HETATM 12 O O4' ADP . . . H 2 49.79 -17.742 16.597 1 35.84 ? O4' ADP 1001 B 1 
HETATM 13 C C3' ADP . . . H 2 50.672 -18.897 18.501 1 36.57 ? C3' ADP 1001 B 1 
HETATM 14 O O3' ADP . . . H 2 50.79 -20.304 18.67 1 39.57 ? O3' ADP 1001 B 1 
HETATM 15 C C2' ADP . . . H 2 51.805 -18.27 17.677 1 33.38 ? C2' ADP 1001 B 1 
HETATM 16 O O2' ADP . . . H 2 52.937 -19.124 17.563 1 35.32 ? O2' ADP 1001 B 1 
HETATM 17 C C1' ADP . . . H 2 51.142 -18.017 16.322 1 35.5 ? C1' ADP 1001 B 1 
HETATM 18 N N9 ADP . . . H 2 51.694 -16.872 15.604 1 32.67 ? N9 ADP 1001 B 1 
HETATM 19 C C8 ADP . . . H 2 51.819 -15.596 16.087 1 30.66 ? C8 ADP 1001 B 1 
HETATM 20 N N7 ADP . . . H 2 52.496 -14.792 15.307 1 28.35 ? N7 ADP 1001 B 1 
HETATM 21 C C5 ADP . . . H 2 52.827 -15.589 14.222 1 28.39 ? C5 ADP 1001 B 1 
HETATM 22 C C6 ADP . . . H 2 53.545 -15.329 13.037 1 29.04 ? C6 ADP 1001 B 1 
HETATM 23 N N6 ADP . . . H 2 54.167 -14.169 12.788 1 28.66 ? N6 ADP 1001 B 1 
HETATM 24 N N1 ADP . . . H 2 53.639 -16.329 12.128 1 32.4 ? N1 ADP 1001 B 1 
HETATM 25 C C2 ADP . . . H 2 53.069 -17.51 12.403 1 32.7 ? C2 ADP 1001 B 1 
HETATM 26 N N3 ADP . . . H 2 52.399 -17.882 13.5 1 32.93 ? N3 ADP 1001 B 1 
HETATM 27 C C4 ADP . . . H 2 52.316 -16.868 14.379 1 29.12 ? C4 ADP 1001 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#