data_5MBH # _model_server_result.job_id jvZUdbdrXKVcvnpjf7ct-Q _model_server_result.datetime_utc '2024-10-19 04:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5MBH # _exptl.entry_id 5MBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 134.64 _cell.angle_gamma 90 _cell.entry_id 5MBH _cell.length_a 65.78 _cell.length_b 142.6 _cell.length_c 56.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 65.78 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5MBH _atom_sites.fract_transf_matrix[1][1] 0.015202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.015014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 HOH A 1 501 5 HOH HOH . C 3 HOH A 2 502 19 HOH HOH . C 3 HOH A 3 503 28 HOH HOH . C 3 HOH A 4 504 16 HOH HOH . C 3 HOH A 5 505 32 HOH HOH . C 3 HOH A 6 506 4 HOH HOH . C 3 HOH A 7 507 3 HOH HOH . C 3 HOH A 8 508 25 HOH HOH . C 3 HOH A 9 509 20 HOH HOH . C 3 HOH A 10 510 18 HOH HOH . C 3 HOH A 11 511 2 HOH HOH . C 3 HOH A 12 512 29 HOH HOH . C 3 HOH A 13 513 8 HOH HOH . C 3 HOH A 14 514 10 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 31 HOH HOH . C 3 HOH A 17 517 6 HOH HOH . C 3 HOH A 18 518 9 HOH HOH . C 3 HOH A 19 519 15 HOH HOH . C 3 HOH A 20 520 30 HOH HOH . C 3 HOH A 21 521 12 HOH HOH . C 3 HOH A 22 522 11 HOH HOH . C 3 HOH A 23 523 14 HOH HOH . C 3 HOH A 24 524 23 HOH HOH . C 3 HOH A 25 525 24 HOH HOH . C 3 HOH A 26 526 21 HOH HOH . C 3 HOH A 27 527 7 HOH HOH . C 3 HOH A 28 528 34 HOH HOH . C 3 HOH A 29 529 1 HOH HOH . C 3 HOH A 30 530 33 HOH HOH . C 3 HOH A 31 531 13 HOH HOH . C 3 HOH A 32 532 26 HOH HOH . C 3 HOH A 33 533 27 HOH HOH . C 3 HOH A 34 534 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 10.146 -40.158 5.027 1 97.49 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 9.726 -40.772 3.867 1 96.96 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 8.545 -41.099 3.736 1 96.7 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 10.635 -40.999 2.852 1 96.89 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 11.955 -40.617 3.01 1 96.95 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 12.761 -40.821 2.104 1 96.62 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 12.373 -40 4.183 1 97.6 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 13.692 -39.629 4.302 1 97.68 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 14.127 -39.015 5.457 1 97.64 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 15.469 -38.646 5.575 1 97.04 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 15.93 -38.026 6.731 1 96.42 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 17.365 -37.622 6.87 1 96.12 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 15.046 -37.775 7.766 1 96.33 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 15.544 -37.107 9.015 1 95.85 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 13.709 -38.149 7.651 1 97.07 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 13.231 -38.771 6.499 1 98.1 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 11.885 -39.136 6.394 1 99.68 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 11.461 -39.757 5.214 1 98.21 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 10.957 -38.837 7.572 1 102.87 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 9.506 -38.385 7.274 1 106.16 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 9.31 -37.008 7.556 1 106.34 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 8.438 -39.245 7.985 1 109.15 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 7.489 -39.704 7.042 1 109 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 7.723 -38.505 9.124 1 111.94 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 8.522 -38.556 10.288 1 112.47 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 6.345 -39.075 9.484 1 114.3 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 5.47 -39.154 8.372 1 116.05 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 3.916 -38.789 8.58 1 117.39 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 3.338 -38.216 7.3 1 117.79 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 3.157 -40.028 8.987 1 117.65 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 3.868 -37.78 9.707 1 117.78 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #