data_5MBN # _model_server_result.job_id o-DLpNvjG7sm9L2L-R5Usw _model_server_result.datetime_utc '2024-10-10 17:15:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":217}' # _entry.id 5MBN # _exptl.entry_id 5MBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.02 _cell.angle_gamma 90 _cell.entry_id 5MBN _cell.length_a 64.84 _cell.length_b 30.98 _cell.length_c 34.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 217 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.168 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 5MBN _atom_sites.fract_transf_matrix[1][1] 0.015423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 216 216 SO4 SO4 . C 3 HEM A 1 217 130 HEM HEM . D 4 HOH A 1 218 1 HOH HOH . D 4 HOH A 2 219 2 HOH HOH . D 4 HOH A 3 220 3 HOH HOH . D 4 HOH A 4 221 4 HOH HOH . D 4 HOH A 5 222 5 HOH HOH . D 4 HOH A 6 223 7 HOH HOH . D 4 HOH A 7 224 8 HOH HOH . D 4 HOH A 8 225 9 HOH HOH . D 4 HOH A 9 226 10 HOH HOH . D 4 HOH A 10 227 11 HOH HOH . D 4 HOH A 11 228 12 HOH HOH . D 4 HOH A 12 229 13 HOH HOH . D 4 HOH A 13 230 14 HOH HOH . D 4 HOH A 14 231 15 HOH HOH . D 4 HOH A 15 232 16 HOH HOH . D 4 HOH A 16 233 17 HOH HOH . D 4 HOH A 17 234 18 HOH HOH . D 4 HOH A 18 235 19 HOH HOH . D 4 HOH A 19 236 20 HOH HOH . D 4 HOH A 20 237 22 HOH HOH . D 4 HOH A 21 238 23 HOH HOH . D 4 HOH A 22 239 24 HOH HOH . D 4 HOH A 23 240 25 HOH HOH . D 4 HOH A 24 241 26 HOH HOH . D 4 HOH A 25 242 27 HOH HOH . D 4 HOH A 26 243 28 HOH HOH . D 4 HOH A 27 244 29 HOH HOH . D 4 HOH A 28 245 30 HOH HOH . D 4 HOH A 29 246 31 HOH HOH . D 4 HOH A 30 247 32 HOH HOH . D 4 HOH A 31 248 33 HOH HOH . D 4 HOH A 32 249 34 HOH HOH . D 4 HOH A 33 250 35 HOH HOH . D 4 HOH A 34 251 36 HOH HOH . D 4 HOH A 35 252 37 HOH HOH . D 4 HOH A 36 253 38 HOH HOH . D 4 HOH A 37 254 39 HOH HOH . D 4 HOH A 38 255 40 HOH HOH . D 4 HOH A 39 256 41 HOH HOH . D 4 HOH A 40 257 42 HOH HOH . D 4 HOH A 41 258 43 HOH HOH . D 4 HOH A 42 259 44 HOH HOH . D 4 HOH A 43 260 45 HOH HOH . D 4 HOH A 44 261 46 HOH HOH . D 4 HOH A 45 262 47 HOH HOH . D 4 HOH A 46 263 48 HOH HOH . D 4 HOH A 47 264 49 HOH HOH . D 4 HOH A 48 265 50 HOH HOH . D 4 HOH A 49 266 52 HOH HOH . D 4 HOH A 50 267 53 HOH HOH . D 4 HOH A 51 268 54 HOH HOH . D 4 HOH A 52 269 55 HOH HOH . D 4 HOH A 53 270 57 HOH HOH . D 4 HOH A 54 271 58 HOH HOH . D 4 HOH A 55 272 59 HOH HOH . D 4 HOH A 56 273 60 HOH HOH . D 4 HOH A 57 274 61 HOH HOH . D 4 HOH A 58 275 62 HOH HOH . D 4 HOH A 59 276 63 HOH HOH . D 4 HOH A 60 277 64 HOH HOH . D 4 HOH A 61 278 65 HOH HOH . D 4 HOH A 62 279 66 HOH HOH . D 4 HOH A 63 280 67 HOH HOH . D 4 HOH A 64 281 68 HOH HOH . D 4 HOH A 65 282 70 HOH HOH . D 4 HOH A 66 283 71 HOH HOH . D 4 HOH A 67 284 72 HOH HOH . D 4 HOH A 68 285 73 HOH HOH . D 4 HOH A 69 286 74 HOH HOH . D 4 HOH A 70 287 75 HOH HOH . D 4 HOH A 71 288 76 HOH HOH . D 4 HOH A 72 289 77 HOH HOH . D 4 HOH A 73 290 78 HOH HOH . D 4 HOH A 74 291 79 HOH HOH . D 4 HOH A 75 292 80 HOH HOH . D 4 HOH A 76 293 81 HOH HOH . D 4 HOH A 77 294 82 HOH HOH . D 4 HOH A 78 295 83 HOH HOH . D 4 HOH A 79 296 84 HOH HOH . D 4 HOH A 80 297 85 HOH HOH . D 4 HOH A 81 298 90 HOH HOH . D 4 HOH A 82 299 91 HOH HOH . D 4 HOH A 83 300 92 HOH HOH . D 4 HOH A 84 301 93 HOH HOH . D 4 HOH A 85 302 94 HOH HOH . D 4 HOH A 86 303 95 HOH HOH . D 4 HOH A 87 304 96 HOH HOH . D 4 HOH A 88 305 97 HOH HOH . D 4 HOH A 89 306 98 HOH HOH . D 4 HOH A 90 307 99 HOH HOH . D 4 HOH A 91 308 100 HOH HOH . D 4 HOH A 92 309 101 HOH HOH . D 4 HOH A 93 310 102 HOH HOH . D 4 HOH A 94 311 103 HOH HOH . D 4 HOH A 95 312 104 HOH HOH . D 4 HOH A 96 313 105 HOH HOH . D 4 HOH A 97 314 106 HOH HOH . D 4 HOH A 98 315 107 HOH HOH . D 4 HOH A 99 316 108 HOH HOH . D 4 HOH A 100 317 109 HOH HOH . D 4 HOH A 101 318 110 HOH HOH . D 4 HOH A 102 319 111 HOH HOH . D 4 HOH A 103 320 112 HOH HOH . D 4 HOH A 104 321 113 HOH HOH . D 4 HOH A 105 322 114 HOH HOH . D 4 HOH A 106 323 115 HOH HOH . D 4 HOH A 107 324 116 HOH HOH . D 4 HOH A 108 325 117 HOH HOH . D 4 HOH A 109 326 118 HOH HOH . D 4 HOH A 110 327 119 HOH HOH . D 4 HOH A 111 328 120 HOH HOH . D 4 HOH A 112 329 121 HOH HOH . D 4 HOH A 113 330 122 HOH HOH . D 4 HOH A 114 331 123 HOH HOH . D 4 HOH A 115 332 124 HOH HOH . D 4 HOH A 116 333 125 HOH HOH . D 4 HOH A 117 334 126 HOH HOH . D 4 HOH A 118 335 127 HOH HOH . D 4 HOH A 119 336 128 HOH HOH . D 4 HOH A 120 337 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 16.145 31.116 5.255 1 8.48 ? CHA HEM 217 A 1 HETATM 2 C CHB HEM . . . C 3 13.88 28.007 8.222 1 13.19 ? CHB HEM 217 A 1 HETATM 3 C CHC HEM . . . C 3 13.638 24.782 4.566 1 15.89 ? CHC HEM 217 A 1 HETATM 4 C CHD HEM . . . C 3 15.898 27.91 1.677 1 30.28 ? CHD HEM 217 A 1 HETATM 5 C C1A HEM . . . C 3 15.532 30.56 6.372 1 17.22 ? C1A HEM 217 A 1 HETATM 6 C C2A HEM . . . C 3 15.442 31.195 7.619 1 15.52 ? C2A HEM 217 A 1 HETATM 7 C C3A HEM . . . C 3 14.807 30.307 8.488 1 14.67 ? C3A HEM 217 A 1 HETATM 8 C C4A HEM . . . C 3 14.477 29.155 7.731 1 15.42 ? C4A HEM 217 A 1 HETATM 9 C CMA HEM . . . C 3 14.504 30.549 9.948 1 12.55 ? CMA HEM 217 A 1 HETATM 10 C CAA HEM . . . C 3 15.886 32.611 7.921 1 34.86 ? CAA HEM 217 A 1 HETATM 11 C CBA HEM . . . C 3 14.756 33.646 8.049 1 22.76 ? CBA HEM 217 A 1 HETATM 12 C CGA HEM . . . C 3 13.875 33.626 6.783 1 27.66 ? CGA HEM 217 A 1 HETATM 13 O O1A HEM . . . C 3 12.673 33.846 6.858 1 35.86 ? O1A HEM 217 A 1 HETATM 14 O O2A HEM . . . C 3 14.395 33.774 5.604 1 30.35 ? O2A HEM 217 A 1 HETATM 15 C C1B HEM . . . C 3 13.649 26.854 7.497 1 9.64 ? C1B HEM 217 A 1 HETATM 16 C C2B HEM . . . C 3 13.125 25.668 8.009 1 19.55 ? C2B HEM 217 A 1 HETATM 17 C C3B HEM . . . C 3 13.083 24.738 6.926 1 30.9 ? C3B HEM 217 A 1 HETATM 18 C C4B HEM . . . C 3 13.54 25.388 5.805 1 20.07 ? C4B HEM 217 A 1 HETATM 19 C CMB HEM . . . C 3 12.743 25.487 9.476 1 14.28 ? CMB HEM 217 A 1 HETATM 20 C CAB HEM . . . C 3 12.768 23.381 6.903 1 17.84 ? CAB HEM 217 A 1 HETATM 21 C CBB HEM . . . C 3 12.474 22.617 8.03 1 17.85 ? CBB HEM 217 A 1 HETATM 22 C C1C HEM . . . C 3 14.171 25.344 3.429 1 17.79 ? C1C HEM 217 A 1 HETATM 23 C C2C HEM . . . C 3 14.421 24.668 2.219 1 23.41 ? C2C HEM 217 A 1 HETATM 24 C C3C HEM . . . C 3 15.111 25.598 1.381 1 34.87 ? C3C HEM 217 A 1 HETATM 25 C C4C HEM . . . C 3 15.227 26.78 2.12 1 22.41 ? C4C HEM 217 A 1 HETATM 26 C CMC HEM . . . C 3 14.039 23.208 1.973 1 11.62 ? CMC HEM 217 A 1 HETATM 27 C CAC HEM . . . C 3 15.654 25.438 0.102 1 23.19 ? CAC HEM 217 A 1 HETATM 28 C CBC HEM . . . C 3 15.572 24.23 -0.623 1 19.21 ? CBC HEM 217 A 1 HETATM 29 C C1D HEM . . . C 3 16.156 29.052 2.398 1 33.15 ? C1D HEM 217 A 1 HETATM 30 C C2D HEM . . . C 3 16.843 30.185 1.89 1 26.18 ? C2D HEM 217 A 1 HETATM 31 C C3D HEM . . . C 3 16.965 31.072 2.957 1 30.08 ? C3D HEM 217 A 1 HETATM 32 C C4D HEM . . . C 3 16.266 30.524 4.018 1 20.1 ? C4D HEM 217 A 1 HETATM 33 C CMD HEM . . . C 3 17.29 30.401 0.437 1 5.91 ? CMD HEM 217 A 1 HETATM 34 C CAD HEM . . . C 3 17.778 32.355 2.991 1 21.61 ? CAD HEM 217 A 1 HETATM 35 C CBD HEM . . . C 3 19.273 32.029 3.035 1 18.35 ? CBD HEM 217 A 1 HETATM 36 C CGD HEM . . . C 3 20.077 33.307 2.894 1 19.88 ? CGD HEM 217 A 1 HETATM 37 O O1D HEM . . . C 3 20.381 33.726 1.775 1 26.04 ? O1D HEM 217 A 1 HETATM 38 O O2D HEM . . . C 3 20.246 34.084 3.932 1 30.75 ? O2D HEM 217 A 1 HETATM 39 N NA HEM . . . C 3 14.894 29.345 6.443 1 17.37 ? NA HEM 217 A 1 HETATM 40 N NB HEM . . . C 3 13.908 26.688 6.163 1 20.28 ? NB HEM 217 A 1 HETATM 41 N NC HEM . . . C 3 14.65 26.608 3.357 1 23.36 ? NC HEM 217 A 1 HETATM 42 N ND HEM . . . C 3 15.768 29.316 3.675 1 11.92 ? ND HEM 217 A 1 HETATM 43 FE FE HEM . . . C 3 14.532 28.095 4.919 1 15.47 ? FE HEM 217 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #