data_5MDN # _model_server_result.job_id RhPXoPbaBhlwwXntJuDIGw _model_server_result.datetime_utc '2024-11-05 00:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 5MDN # _exptl.entry_id 5MDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.72 _cell.angle_gamma 90 _cell.entry_id 5MDN _cell.length_a 74.19 _cell.length_b 100.742 _cell.length_c 119.335 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 7 A ASP 7 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 A OD1 ASP 169 A ASP 169 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A OD2 ASP 363 A ASP 363 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc4 B OD1 ASP 7 B ASP 7 1_555 F MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 B OD2 ASP 363 B ASP 363 1_555 F MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MDN _atom_sites.fract_transf_matrix[1][1] 0.013479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001113 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 801 2 MG MG . D 2 MG A 1 802 5 MG MG . E 2 MG A 1 803 6 MG MG . F 2 MG B 1 801 1 MG MG . G 2 MG B 1 802 3 MG MG . H 2 MG B 1 803 4 MG MG . I 3 HOH A 1 901 274 HOH HOH . I 3 HOH A 2 902 286 HOH HOH . I 3 HOH A 3 903 284 HOH HOH . I 3 HOH A 4 904 288 HOH HOH . I 3 HOH A 5 905 301 HOH HOH . I 3 HOH A 6 906 278 HOH HOH . I 3 HOH A 7 907 275 HOH HOH . I 3 HOH A 8 908 297 HOH HOH . I 3 HOH A 9 909 287 HOH HOH . I 3 HOH A 10 910 281 HOH HOH . I 3 HOH A 11 911 290 HOH HOH . I 3 HOH A 12 912 293 HOH HOH . I 3 HOH A 13 913 306 HOH HOH . I 3 HOH A 14 914 294 HOH HOH . I 3 HOH A 15 915 248 HOH HOH . I 3 HOH A 16 916 295 HOH HOH . I 3 HOH A 17 917 272 HOH HOH . I 3 HOH A 18 918 289 HOH HOH . I 3 HOH A 19 919 300 HOH HOH . J 3 HOH B 1 901 234 HOH HOH . J 3 HOH B 2 902 250 HOH HOH . J 3 HOH B 3 903 253 HOH HOH . J 3 HOH B 4 904 257 HOH HOH . J 3 HOH B 5 905 254 HOH HOH . J 3 HOH B 6 906 3 HOH HOH . J 3 HOH B 7 907 40 HOH HOH . J 3 HOH B 8 908 242 HOH HOH . J 3 HOH B 9 909 265 HOH HOH . J 3 HOH B 10 910 223 HOH HOH . J 3 HOH B 11 911 246 HOH HOH . J 3 HOH B 12 912 256 HOH HOH . J 3 HOH B 13 913 303 HOH HOH . J 3 HOH B 14 914 10 HOH HOH . J 3 HOH B 15 915 263 HOH HOH . J 3 HOH B 16 916 243 HOH HOH . J 3 HOH B 17 917 244 HOH HOH . J 3 HOH B 18 918 238 HOH HOH . J 3 HOH B 19 919 262 HOH HOH . J 3 HOH B 20 920 240 HOH HOH . J 3 HOH B 21 921 249 HOH HOH . J 3 HOH B 22 922 237 HOH HOH . J 3 HOH B 23 923 268 HOH HOH . J 3 HOH B 24 924 305 HOH HOH . J 3 HOH B 25 925 302 HOH HOH . J 3 HOH B 26 926 258 HOH HOH . J 3 HOH B 27 927 310 HOH HOH . J 3 HOH B 28 928 267 HOH HOH . J 3 HOH B 29 929 239 HOH HOH . J 3 HOH B 30 930 273 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 60.994 _atom_site.Cartn_y -3.278 _atom_site.Cartn_z -46.472 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #