data_5MDQ # _model_server_result.job_id uQDGQEvZTueWUcYiZKJqcw _model_server_result.datetime_utc '2024-11-23 20:42:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5MDQ # _exptl.entry_id 5MDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.94 _cell.angle_gamma 90 _cell.entry_id 5MDQ _cell.length_a 255.73 _cell.length_b 148.639 _cell.length_c 54.364 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 146 A GLN 146 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A OE1 GLN 149 A GLN 149 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc3 A OD1 ASP 174 A ASP 174 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 A OD2 ASP 174 A ASP 174 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 D NA NA . A NA 401 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 D NA NA . A NA 401 1_555 G O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 B OE1 GLN 146 B GLN 146 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc8 B OE1 GLN 149 B GLN 149 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc9 B OD1 ASP 174 B ASP 174 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 B OD2 ASP 174 B ASP 174 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc11 E NA NA . B NA 401 1_555 H O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc12 C OE1 GLN 146 C GLN 146 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc13 C OE1 GLN 149 C GLN 149 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc14 C OD1 ASP 174 C ASP 174 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc15 C OD2 ASP 174 C ASP 174 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc16 F NA NA . C NA 401 1_555 I O HOH . C HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MDQ _atom_sites.fract_transf_matrix[1][1] 0.00391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000338 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 401 2 NA NA . E 2 NA B 1 401 1 NA NA . F 2 NA C 1 401 3 NA NA . G 3 HOH A 1 501 13 HOH HOH . G 3 HOH A 2 502 10 HOH HOH . G 3 HOH A 3 503 3 HOH HOH . G 3 HOH A 4 504 22 HOH HOH . G 3 HOH A 5 505 37 HOH HOH . G 3 HOH A 6 506 5 HOH HOH . G 3 HOH A 7 507 6 HOH HOH . G 3 HOH A 8 508 7 HOH HOH . G 3 HOH A 9 509 1 HOH HOH . G 3 HOH A 10 510 11 HOH HOH . G 3 HOH A 11 511 36 HOH HOH . G 3 HOH A 12 512 14 HOH HOH . G 3 HOH A 13 513 2 HOH HOH . G 3 HOH A 14 514 18 HOH HOH . G 3 HOH A 15 515 17 HOH HOH . G 3 HOH A 16 516 12 HOH HOH . G 3 HOH A 17 517 8 HOH HOH . G 3 HOH A 18 518 9 HOH HOH . G 3 HOH A 19 519 4 HOH HOH . H 3 HOH B 1 501 25 HOH HOH . H 3 HOH B 2 502 19 HOH HOH . H 3 HOH B 3 503 29 HOH HOH . H 3 HOH B 4 504 28 HOH HOH . H 3 HOH B 5 505 35 HOH HOH . H 3 HOH B 6 506 23 HOH HOH . H 3 HOH B 7 507 15 HOH HOH . H 3 HOH B 8 508 31 HOH HOH . H 3 HOH B 9 509 20 HOH HOH . H 3 HOH B 10 510 26 HOH HOH . H 3 HOH B 11 511 27 HOH HOH . H 3 HOH B 12 512 24 HOH HOH . H 3 HOH B 13 513 21 HOH HOH . H 3 HOH B 14 514 16 HOH HOH . H 3 HOH B 15 515 30 HOH HOH . I 3 HOH C 1 501 32 HOH HOH . I 3 HOH C 2 502 34 HOH HOH . I 3 HOH C 3 503 33 HOH HOH . I 3 HOH C 4 504 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 99.572 _atom_site.Cartn_y -6.369 _atom_site.Cartn_z 16.3 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #