data_5ME9
#
_model_server_result.job_id            RSHPEmfbv5Evw8itD3TAdg 
_model_server_result.datetime_utc      '2024-11-05 00:16:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5me9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":504}' 
#
_entry.id    5ME9 
#
_exptl.entry_id    5ME9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ME9 
_cell.length_a            82.897 
_cell.length_b            122.545 
_cell.length_c            148.393 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ME9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,N 1 1 
B,H,I,J,K,O 2 1 
C,L,M,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 243 A GLY 242 1_555 A N MSE 244 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MSE 244 A MSE 243 1_555 A N HIS 245 A HIS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C ALA 311 A ALA 310 1_555 A N MSE 312 A MSE 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MSE 312 A MSE 311 1_555 A N LYS 313 A LYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C SER 350 A SER 349 1_555 A N MSE 351 A MSE 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 351 A MSE 350 1_555 A N MSE 352 A MSE 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C MSE 352 A MSE 351 1_555 A N LYS 353 A LYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale8 A C THR 383 A THR 382 1_555 A N MSE 384 A MSE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 A C MSE 384 A MSE 383 1_555 A N ASN 385 A ASN 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C ILE 422 A ILE 421 1_555 A N MSE 423 A MSE 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 A C MSE 423 A MSE 422 1_555 A N THR 424 A THR 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 B C GLY 243 B GLY 242 1_555 B N MSE 244 B MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 B C MSE 244 B MSE 243 1_555 B N HIS 245 B HIS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 B C ALA 311 B ALA 310 1_555 B N MSE 312 B MSE 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 B C MSE 312 B MSE 311 1_555 B N LYS 313 B LYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 B C SER 350 B SER 349 1_555 B N MSE 351 B MSE 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale17 B C MSE 351 B MSE 350 1_555 B N MSE 352 B MSE 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 B C MSE 352 B MSE 351 1_555 B N LYS 353 B LYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale19 B C THR 383 B THR 382 1_555 B N MSE 384 B MSE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 B C MSE 384 B MSE 383 1_555 B N ASN 385 B ASN 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale21 B C ILE 422 B ILE 421 1_555 B N MSE 423 B MSE 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale22 B C MSE 423 B MSE 422 1_555 B N THR 424 B THR 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale23 C C GLY 243 C GLY 242 1_555 C N MSE 244 C MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 C C MSE 244 C MSE 243 1_555 C N HIS 245 C HIS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale25 C C ALA 311 C ALA 310 1_555 C N MSE 312 C MSE 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale26 C C MSE 312 C MSE 311 1_555 C N LYS 313 C LYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale27 C C SER 350 C SER 349 1_555 C N MSE 351 C MSE 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale28 C C MSE 351 C MSE 350 1_555 C N MSE 352 C MSE 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale29 C C MSE 352 C MSE 351 1_555 C N LYS 353 C LYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale30 C C THR 383 C THR 382 1_555 C N MSE 384 C MSE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale31 C C MSE 384 C MSE 383 1_555 C N ASN 385 C ASN 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale32 C C ILE 422 C ILE 421 1_555 C N MSE 423 C MSE 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale33 C C MSE 423 C MSE 422 1_555 C N THR 424 C THR 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5ME9 
_atom_sites.fract_transf_matrix[1][1]    0.012063 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00816 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 501 1 SO4 SO4 . 
E 2 SO4 A 1 502 2 SO4 SO4 . 
F 3 GOL A 1 503 2 GOL GOL . 
G 3 GOL A 1 504 3 GOL GOL . 
H 2 SO4 B 1 501 3 SO4 SO4 . 
I 2 SO4 B 1 502 4 SO4 SO4 . 
J 2 SO4 B 1 503 5 SO4 SO4 . 
K 3 GOL B 1 504 1 GOL GOL . 
L 2 SO4 C 1 501 6 SO4 SO4 . 
M 2 SO4 C 1 502 7 SO4 SO4 . 
N 4 HOH A 1 601 4 HOH HOH . 
N 4 HOH A 2 602 8 HOH HOH . 
N 4 HOH A 3 603 11 HOH HOH . 
N 4 HOH A 4 604 5 HOH HOH . 
N 4 HOH A 5 605 17 HOH HOH . 
N 4 HOH A 6 606 2 HOH HOH . 
N 4 HOH A 7 607 31 HOH HOH . 
N 4 HOH A 8 608 9 HOH HOH . 
N 4 HOH A 9 609 41 HOH HOH . 
N 4 HOH A 10 610 34 HOH HOH . 
N 4 HOH A 11 611 25 HOH HOH . 
N 4 HOH A 12 612 87 HOH HOH . 
N 4 HOH A 13 613 77 HOH HOH . 
N 4 HOH A 14 614 15 HOH HOH . 
N 4 HOH A 15 615 23 HOH HOH . 
N 4 HOH A 16 616 29 HOH HOH . 
N 4 HOH A 17 617 82 HOH HOH . 
N 4 HOH A 18 618 12 HOH HOH . 
N 4 HOH A 19 619 78 HOH HOH . 
N 4 HOH A 20 620 28 HOH HOH . 
N 4 HOH A 21 621 83 HOH HOH . 
N 4 HOH A 22 622 52 HOH HOH . 
N 4 HOH A 23 623 90 HOH HOH . 
N 4 HOH A 24 624 95 HOH HOH . 
N 4 HOH A 25 625 50 HOH HOH . 
N 4 HOH A 26 626 104 HOH HOH . 
N 4 HOH A 27 627 89 HOH HOH . 
N 4 HOH A 28 628 80 HOH HOH . 
N 4 HOH A 29 629 79 HOH HOH . 
N 4 HOH A 30 630 7 HOH HOH . 
N 4 HOH A 31 631 91 HOH HOH . 
N 4 HOH A 32 632 93 HOH HOH . 
N 4 HOH A 33 633 94 HOH HOH . 
N 4 HOH A 34 634 92 HOH HOH . 
N 4 HOH A 35 635 81 HOH HOH . 
N 4 HOH A 36 636 88 HOH HOH . 
O 4 HOH B 1 601 107 HOH HOH . 
O 4 HOH B 2 602 39 HOH HOH . 
O 4 HOH B 3 603 84 HOH HOH . 
O 4 HOH B 4 604 98 HOH HOH . 
O 4 HOH B 5 605 51 HOH HOH . 
O 4 HOH B 6 606 13 HOH HOH . 
O 4 HOH B 7 607 18 HOH HOH . 
O 4 HOH B 8 608 46 HOH HOH . 
O 4 HOH B 9 609 21 HOH HOH . 
O 4 HOH B 10 610 59 HOH HOH . 
O 4 HOH B 11 611 27 HOH HOH . 
O 4 HOH B 12 612 58 HOH HOH . 
O 4 HOH B 13 613 62 HOH HOH . 
O 4 HOH B 14 614 40 HOH HOH . 
O 4 HOH B 15 615 45 HOH HOH . 
O 4 HOH B 16 616 53 HOH HOH . 
O 4 HOH B 17 617 49 HOH HOH . 
O 4 HOH B 18 618 97 HOH HOH . 
O 4 HOH B 19 619 6 HOH HOH . 
O 4 HOH B 20 620 61 HOH HOH . 
O 4 HOH B 21 621 43 HOH HOH . 
O 4 HOH B 22 622 102 HOH HOH . 
O 4 HOH B 23 623 48 HOH HOH . 
O 4 HOH B 24 624 100 HOH HOH . 
O 4 HOH B 25 625 101 HOH HOH . 
O 4 HOH B 26 626 56 HOH HOH . 
O 4 HOH B 27 627 54 HOH HOH . 
O 4 HOH B 28 628 60 HOH HOH . 
O 4 HOH B 29 629 35 HOH HOH . 
O 4 HOH B 30 630 57 HOH HOH . 
O 4 HOH B 31 631 105 HOH HOH . 
O 4 HOH B 32 632 76 HOH HOH . 
O 4 HOH B 33 633 109 HOH HOH . 
O 4 HOH B 34 634 103 HOH HOH . 
O 4 HOH B 35 635 96 HOH HOH . 
O 4 HOH B 36 636 99 HOH HOH . 
P 4 HOH C 1 601 30 HOH HOH . 
P 4 HOH C 2 602 108 HOH HOH . 
P 4 HOH C 3 603 70 HOH HOH . 
P 4 HOH C 4 604 42 HOH HOH . 
P 4 HOH C 5 605 1 HOH HOH . 
P 4 HOH C 6 606 47 HOH HOH . 
P 4 HOH C 7 607 19 HOH HOH . 
P 4 HOH C 8 608 67 HOH HOH . 
P 4 HOH C 9 609 32 HOH HOH . 
P 4 HOH C 10 610 72 HOH HOH . 
P 4 HOH C 11 611 16 HOH HOH . 
P 4 HOH C 12 612 69 HOH HOH . 
P 4 HOH C 13 613 106 HOH HOH . 
P 4 HOH C 14 614 85 HOH HOH . 
P 4 HOH C 15 615 64 HOH HOH . 
P 4 HOH C 16 616 86 HOH HOH . 
P 4 HOH C 17 617 63 HOH HOH . 
P 4 HOH C 18 618 68 HOH HOH . 
P 4 HOH C 19 619 75 HOH HOH . 
P 4 HOH C 20 620 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -49.968 -38.366 -48.178 1 90.46 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . G 3 -50.735 -39.301 -48.9 1 88.96 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . G 3 -48.488 -38.562 -48.485 1 91.76 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . G 3 -47.802 -37.329 -48.41 1 94.21 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . G 3 -47.909 -39.543 -47.475 1 89.53 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . G 3 -48.164 -40.849 -47.941 1 88.04 ? O3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              115 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#