data_5MEK # _model_server_result.job_id sH99pCXo7OgJFh0mw6rX1w _model_server_result.datetime_utc '2024-11-22 04:54:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":409}' # _entry.id 5MEK # _exptl.entry_id 5MEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MEK _cell.length_a 62.74 _cell.length_b 62.74 _cell.length_c 201.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 127 n n C1 C2 EDO sing 128 n n C1 H11 EDO sing 129 n n C1 H12 EDO sing 130 n n O1 HO1 EDO sing 131 n n C2 O2 EDO sing 132 n n C2 H21 EDO sing 133 n n C2 H22 EDO sing 134 n n O2 HO2 EDO sing 135 n n # _atom_sites.entry_id 5MEK _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3P A 1 401 1 A3P PAP . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 3 EDO A 1 407 6 EDO EDO . I 3 EDO A 1 408 8 EDO EDO . J 3 EDO A 1 409 10 EDO EDO . K 3 EDO A 1 410 11 EDO EDO . L 3 EDO A 1 411 12 EDO EDO . M 3 EDO A 1 412 17 EDO EDO . N 3 EDO A 1 413 18 EDO EDO . O 3 EDO A 1 414 19 EDO EDO . P 3 EDO A 1 415 22 EDO EDO . Q 3 EDO A 1 416 23 EDO EDO . R 3 EDO A 1 417 25 EDO EDO . S 3 EDO A 1 418 26 EDO EDO . T 3 EDO A 1 419 27 EDO EDO . U 3 EDO A 1 420 29 EDO EDO . V 3 EDO A 1 421 30 EDO EDO . W 3 EDO A 1 422 31 EDO EDO . X 3 EDO A 1 423 34 EDO EDO . Y 4 POL A 1 424 1 POL POL . Z 4 POL A 1 425 2 POL POL . AA 4 POL A 1 426 3 POL POL . BA 4 POL A 1 427 4 POL POL . CA 4 POL A 1 428 5 POL POL . DA 5 HOH A 1 501 326 HOH HOH . DA 5 HOH A 2 502 266 HOH HOH . DA 5 HOH A 3 503 357 HOH HOH . DA 5 HOH A 4 504 126 HOH HOH . DA 5 HOH A 5 505 161 HOH HOH . DA 5 HOH A 6 506 292 HOH HOH . DA 5 HOH A 7 507 60 HOH HOH . DA 5 HOH A 8 508 408 HOH HOH . DA 5 HOH A 9 509 278 HOH HOH . DA 5 HOH A 10 510 342 HOH HOH . DA 5 HOH A 11 511 351 HOH HOH . DA 5 HOH A 12 512 220 HOH HOH . DA 5 HOH A 13 513 311 HOH HOH . DA 5 HOH A 14 514 44 HOH HOH . DA 5 HOH A 15 515 200 HOH HOH . DA 5 HOH A 16 516 43 HOH HOH . DA 5 HOH A 17 517 288 HOH HOH . DA 5 HOH A 18 518 412 HOH HOH . DA 5 HOH A 19 519 97 HOH HOH . DA 5 HOH A 20 520 407 HOH HOH . DA 5 HOH A 21 521 25 HOH HOH . DA 5 HOH A 22 522 293 HOH HOH . DA 5 HOH A 23 523 34 HOH HOH . DA 5 HOH A 24 524 35 HOH HOH . DA 5 HOH A 25 525 50 HOH HOH . DA 5 HOH A 26 526 410 HOH HOH . DA 5 HOH A 27 527 112 HOH HOH . DA 5 HOH A 28 528 27 HOH HOH . DA 5 HOH A 29 529 92 HOH HOH . DA 5 HOH A 30 530 356 HOH HOH . DA 5 HOH A 31 531 201 HOH HOH . DA 5 HOH A 32 532 346 HOH HOH . DA 5 HOH A 33 533 243 HOH HOH . DA 5 HOH A 34 534 11 HOH HOH . DA 5 HOH A 35 535 373 HOH HOH . DA 5 HOH A 36 536 113 HOH HOH . DA 5 HOH A 37 537 56 HOH HOH . DA 5 HOH A 38 538 209 HOH HOH . DA 5 HOH A 39 539 297 HOH HOH . DA 5 HOH A 40 540 265 HOH HOH . DA 5 HOH A 41 541 58 HOH HOH . DA 5 HOH A 42 542 219 HOH HOH . DA 5 HOH A 43 543 268 HOH HOH . DA 5 HOH A 44 544 401 HOH HOH . DA 5 HOH A 45 545 21 HOH HOH . DA 5 HOH A 46 546 121 HOH HOH . DA 5 HOH A 47 547 3 HOH HOH . DA 5 HOH A 48 548 170 HOH HOH . DA 5 HOH A 49 549 227 HOH HOH . DA 5 HOH A 50 550 17 HOH HOH . DA 5 HOH A 51 551 153 HOH HOH . DA 5 HOH A 52 552 135 HOH HOH . DA 5 HOH A 53 553 377 HOH HOH . DA 5 HOH A 54 554 189 HOH HOH . DA 5 HOH A 55 555 406 HOH HOH . DA 5 HOH A 56 556 380 HOH HOH . DA 5 HOH A 57 557 7 HOH HOH . DA 5 HOH A 58 558 140 HOH HOH . DA 5 HOH A 59 559 120 HOH HOH . DA 5 HOH A 60 560 119 HOH HOH . DA 5 HOH A 61 561 86 HOH HOH . DA 5 HOH A 62 562 233 HOH HOH . DA 5 HOH A 63 563 152 HOH HOH . DA 5 HOH A 64 564 245 HOH HOH . DA 5 HOH A 65 565 13 HOH HOH . DA 5 HOH A 66 566 228 HOH HOH . DA 5 HOH A 67 567 206 HOH HOH . DA 5 HOH A 68 568 137 HOH HOH . DA 5 HOH A 69 569 55 HOH HOH . DA 5 HOH A 70 570 332 HOH HOH . DA 5 HOH A 71 571 46 HOH HOH . DA 5 HOH A 72 572 339 HOH HOH . DA 5 HOH A 73 573 241 HOH HOH . DA 5 HOH A 74 574 150 HOH HOH . DA 5 HOH A 75 575 37 HOH HOH . DA 5 HOH A 76 576 289 HOH HOH . DA 5 HOH A 77 577 91 HOH HOH . DA 5 HOH A 78 578 12 HOH HOH . DA 5 HOH A 79 579 41 HOH HOH . DA 5 HOH A 80 580 199 HOH HOH . DA 5 HOH A 81 581 33 HOH HOH . DA 5 HOH A 82 582 385 HOH HOH . DA 5 HOH A 83 583 194 HOH HOH . DA 5 HOH A 84 584 8 HOH HOH . DA 5 HOH A 85 585 155 HOH HOH . DA 5 HOH A 86 586 111 HOH HOH . DA 5 HOH A 87 587 143 HOH HOH . DA 5 HOH A 88 588 29 HOH HOH . DA 5 HOH A 89 589 185 HOH HOH . DA 5 HOH A 90 590 72 HOH HOH . DA 5 HOH A 91 591 45 HOH HOH . DA 5 HOH A 92 592 224 HOH HOH . DA 5 HOH A 93 593 133 HOH HOH . DA 5 HOH A 94 594 14 HOH HOH . DA 5 HOH A 95 595 71 HOH HOH . DA 5 HOH A 96 596 16 HOH HOH . DA 5 HOH A 97 597 94 HOH HOH . DA 5 HOH A 98 598 47 HOH HOH . DA 5 HOH A 99 599 367 HOH HOH . DA 5 HOH A 100 600 171 HOH HOH . DA 5 HOH A 101 601 81 HOH HOH . DA 5 HOH A 102 602 212 HOH HOH . DA 5 HOH A 103 603 20 HOH HOH . DA 5 HOH A 104 604 213 HOH HOH . DA 5 HOH A 105 605 129 HOH HOH . DA 5 HOH A 106 606 221 HOH HOH . DA 5 HOH A 107 607 329 HOH HOH . DA 5 HOH A 108 608 198 HOH HOH . DA 5 HOH A 109 609 298 HOH HOH . DA 5 HOH A 110 610 73 HOH HOH . DA 5 HOH A 111 611 387 HOH HOH . DA 5 HOH A 112 612 89 HOH HOH . DA 5 HOH A 113 613 110 HOH HOH . DA 5 HOH A 114 614 127 HOH HOH . DA 5 HOH A 115 615 69 HOH HOH . DA 5 HOH A 116 616 90 HOH HOH . DA 5 HOH A 117 617 361 HOH HOH . DA 5 HOH A 118 618 270 HOH HOH . DA 5 HOH A 119 619 78 HOH HOH . DA 5 HOH A 120 620 36 HOH HOH . DA 5 HOH A 121 621 395 HOH HOH . DA 5 HOH A 122 622 6 HOH HOH . DA 5 HOH A 123 623 18 HOH HOH . DA 5 HOH A 124 624 363 HOH HOH . DA 5 HOH A 125 625 271 HOH HOH . DA 5 HOH A 126 626 106 HOH HOH . DA 5 HOH A 127 627 62 HOH HOH . DA 5 HOH A 128 628 79 HOH HOH . DA 5 HOH A 129 629 218 HOH HOH . DA 5 HOH A 130 630 114 HOH HOH . DA 5 HOH A 131 631 337 HOH HOH . DA 5 HOH A 132 632 343 HOH HOH . DA 5 HOH A 133 633 364 HOH HOH . DA 5 HOH A 134 634 327 HOH HOH . DA 5 HOH A 135 635 334 HOH HOH . DA 5 HOH A 136 636 413 HOH HOH . DA 5 HOH A 137 637 88 HOH HOH . DA 5 HOH A 138 638 398 HOH HOH . DA 5 HOH A 139 639 9 HOH HOH . DA 5 HOH A 140 640 250 HOH HOH . DA 5 HOH A 141 641 360 HOH HOH . DA 5 HOH A 142 642 396 HOH HOH . DA 5 HOH A 143 643 74 HOH HOH . DA 5 HOH A 144 644 184 HOH HOH . DA 5 HOH A 145 645 66 HOH HOH . DA 5 HOH A 146 646 142 HOH HOH . DA 5 HOH A 147 647 39 HOH HOH . DA 5 HOH A 148 648 358 HOH HOH . DA 5 HOH A 149 649 204 HOH HOH . DA 5 HOH A 150 650 131 HOH HOH . DA 5 HOH A 151 651 19 HOH HOH . DA 5 HOH A 152 652 211 HOH HOH . DA 5 HOH A 153 653 52 HOH HOH . DA 5 HOH A 154 654 344 HOH HOH . DA 5 HOH A 155 655 28 HOH HOH . DA 5 HOH A 156 656 38 HOH HOH . DA 5 HOH A 157 657 115 HOH HOH . DA 5 HOH A 158 658 190 HOH HOH . DA 5 HOH A 159 659 109 HOH HOH . DA 5 HOH A 160 660 205 HOH HOH . DA 5 HOH A 161 661 61 HOH HOH . DA 5 HOH A 162 662 362 HOH HOH . DA 5 HOH A 163 663 195 HOH HOH . DA 5 HOH A 164 664 381 HOH HOH . DA 5 HOH A 165 665 180 HOH HOH . DA 5 HOH A 166 666 290 HOH HOH . DA 5 HOH A 167 667 232 HOH HOH . DA 5 HOH A 168 668 397 HOH HOH . DA 5 HOH A 169 669 202 HOH HOH . DA 5 HOH A 170 670 405 HOH HOH . DA 5 HOH A 171 671 341 HOH HOH . DA 5 HOH A 172 672 116 HOH HOH . DA 5 HOH A 173 673 157 HOH HOH . DA 5 HOH A 174 674 239 HOH HOH . DA 5 HOH A 175 675 40 HOH HOH . DA 5 HOH A 176 676 65 HOH HOH . DA 5 HOH A 177 677 280 HOH HOH . DA 5 HOH A 178 678 123 HOH HOH . DA 5 HOH A 179 679 214 HOH HOH . DA 5 HOH A 180 680 350 HOH HOH . DA 5 HOH A 181 681 51 HOH HOH . DA 5 HOH A 182 682 285 HOH HOH . DA 5 HOH A 183 683 53 HOH HOH . DA 5 HOH A 184 684 147 HOH HOH . DA 5 HOH A 185 685 192 HOH HOH . DA 5 HOH A 186 686 187 HOH HOH . DA 5 HOH A 187 687 282 HOH HOH . DA 5 HOH A 188 688 87 HOH HOH . DA 5 HOH A 189 689 299 HOH HOH . DA 5 HOH A 190 690 248 HOH HOH . DA 5 HOH A 191 691 335 HOH HOH . DA 5 HOH A 192 692 272 HOH HOH . DA 5 HOH A 193 693 23 HOH HOH . DA 5 HOH A 194 694 215 HOH HOH . DA 5 HOH A 195 695 399 HOH HOH . DA 5 HOH A 196 696 389 HOH HOH . DA 5 HOH A 197 697 281 HOH HOH . DA 5 HOH A 198 698 98 HOH HOH . DA 5 HOH A 199 699 99 HOH HOH . DA 5 HOH A 200 700 303 HOH HOH . DA 5 HOH A 201 701 338 HOH HOH . DA 5 HOH A 202 702 188 HOH HOH . DA 5 HOH A 203 703 409 HOH HOH . DA 5 HOH A 204 704 402 HOH HOH . DA 5 HOH A 205 705 253 HOH HOH . DA 5 HOH A 206 706 276 HOH HOH . DA 5 HOH A 207 707 366 HOH HOH . DA 5 HOH A 208 708 132 HOH HOH . DA 5 HOH A 209 709 404 HOH HOH . DA 5 HOH A 210 710 394 HOH HOH . DA 5 HOH A 211 711 379 HOH HOH . DA 5 HOH A 212 712 390 HOH HOH . DA 5 HOH A 213 713 349 HOH HOH . DA 5 HOH A 214 714 64 HOH HOH . DA 5 HOH A 215 715 388 HOH HOH . DA 5 HOH A 216 716 376 HOH HOH . DA 5 HOH A 217 717 411 HOH HOH . DA 5 HOH A 218 718 352 HOH HOH . DA 5 HOH A 219 719 331 HOH HOH . DA 5 HOH A 220 720 355 HOH HOH . DA 5 HOH A 221 721 275 HOH HOH . DA 5 HOH A 222 722 284 HOH HOH . DA 5 HOH A 223 723 263 HOH HOH . DA 5 HOH A 224 724 258 HOH HOH . DA 5 HOH A 225 725 154 HOH HOH . DA 5 HOH A 226 726 400 HOH HOH . DA 5 HOH A 227 727 371 HOH HOH . DA 5 HOH A 228 728 104 HOH HOH . DA 5 HOH A 229 729 365 HOH HOH . DA 5 HOH A 230 730 146 HOH HOH . DA 5 HOH A 231 731 102 HOH HOH . DA 5 HOH A 232 732 314 HOH HOH . DA 5 HOH A 233 733 347 HOH HOH . DA 5 HOH A 234 734 167 HOH HOH . DA 5 HOH A 235 735 369 HOH HOH . DA 5 HOH A 236 736 393 HOH HOH . DA 5 HOH A 237 737 149 HOH HOH . DA 5 HOH A 238 738 269 HOH HOH . DA 5 HOH A 239 739 336 HOH HOH . DA 5 HOH A 240 740 348 HOH HOH . DA 5 HOH A 241 741 378 HOH HOH . DA 5 HOH A 242 742 359 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 13.402 26.949 42.673 1 39.21 ? C1 EDO 409 A 1 HETATM 2 O O1 EDO . . . J 3 13.026 25.601 43.04 1 34.08 ? O1 EDO 409 A 1 HETATM 3 C C2 EDO . . . J 3 14.647 27.57 43.334 1 42.07 ? C2 EDO 409 A 1 HETATM 4 O O2 EDO . . . J 3 15.401 26.597 44.052 1 43.8 ? O2 EDO 409 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #