data_5MEN # _model_server_result.job_id 17m31TfaUXvhnM85YK9rpQ _model_server_result.datetime_utc '2024-11-25 10:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5men # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":306}' # _entry.id 5MEN # _exptl.entry_id 5MEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.15 _cell.angle_gamma 90 _cell.entry_id 5MEN _cell.length_a 93.16 _cell.length_b 48.69 _cell.length_c 118.1 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N ? 8 K N N ? 8 O N N ? 8 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 D SG CYS 22 D CYS 23 1_555 D SG CYS 86 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf5 D SG CYS 133 D CYS 134 1_555 D SG CYS 183 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf6 D SG CYS 158 D CYS 159 1_555 E SG CYS 167 E CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf7 E SG CYS 22 E CYS 23 1_555 E SG CYS 90 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 E SG CYS 141 E CYS 142 1_555 E SG CYS 206 E CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 312 n n S O2 SO4 doub 313 n n S O3 SO4 sing 314 n n S O4 SO4 sing 315 n n # _atom_sites.entry_id 5MEN _atom_sites.fract_transf_matrix[1][1] 0.010734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003519 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EDO A 1 301 303 EDO EDO . G 6 EDO A 1 302 305 EDO EDO . H 7 GOL A 1 303 311 GOL GOL . I 8 SO4 A 1 304 321 SO4 SO4 . J 8 SO4 A 1 305 324 SO4 SO4 . K 8 SO4 A 1 306 325 SO4 SO4 . L 6 EDO B 1 301 301 EDO EDO . M 6 EDO B 1 302 302 EDO EDO . N 6 EDO B 1 303 304 EDO EDO . O 8 SO4 B 1 304 323 SO4 SO4 . P 8 SO4 E 1 301 322 SO4 SO4 . Q 9 HOH A 1 401 455 HOH HOH . Q 9 HOH A 2 402 428 HOH HOH . Q 9 HOH A 3 403 435 HOH HOH . Q 9 HOH A 4 404 434 HOH HOH . Q 9 HOH A 5 405 457 HOH HOH . Q 9 HOH A 6 406 456 HOH HOH . Q 9 HOH A 7 407 448 HOH HOH . Q 9 HOH A 8 408 439 HOH HOH . Q 9 HOH A 9 409 442 HOH HOH . Q 9 HOH A 10 410 422 HOH HOH . Q 9 HOH A 11 411 418 HOH HOH . Q 9 HOH A 12 412 446 HOH HOH . Q 9 HOH A 13 413 436 HOH HOH . Q 9 HOH A 14 414 415 HOH HOH . Q 9 HOH A 15 415 425 HOH HOH . Q 9 HOH A 16 416 408 HOH HOH . Q 9 HOH A 17 417 404 HOH HOH . Q 9 HOH A 18 418 450 HOH HOH . Q 9 HOH A 19 419 401 HOH HOH . Q 9 HOH A 20 420 416 HOH HOH . Q 9 HOH A 21 421 431 HOH HOH . Q 9 HOH A 22 422 432 HOH HOH . Q 9 HOH A 23 423 429 HOH HOH . R 9 HOH B 1 401 458 HOH HOH . R 9 HOH B 2 402 433 HOH HOH . R 9 HOH B 3 403 414 HOH HOH . R 9 HOH B 4 404 430 HOH HOH . R 9 HOH B 5 405 406 HOH HOH . R 9 HOH B 6 406 421 HOH HOH . R 9 HOH B 7 407 402 HOH HOH . R 9 HOH B 8 408 409 HOH HOH . R 9 HOH B 9 409 437 HOH HOH . R 9 HOH B 10 410 410 HOH HOH . R 9 HOH B 11 411 423 HOH HOH . R 9 HOH B 12 412 426 HOH HOH . R 9 HOH B 13 413 403 HOH HOH . S 9 HOH C 1 101 438 HOH HOH . T 9 HOH D 1 301 449 HOH HOH . T 9 HOH D 2 302 419 HOH HOH . T 9 HOH D 3 303 451 HOH HOH . T 9 HOH D 4 304 411 HOH HOH . T 9 HOH D 5 305 447 HOH HOH . T 9 HOH D 6 306 453 HOH HOH . T 9 HOH D 7 307 441 HOH HOH . T 9 HOH D 8 308 443 HOH HOH . T 9 HOH D 9 309 412 HOH HOH . T 9 HOH D 10 310 445 HOH HOH . T 9 HOH D 11 311 407 HOH HOH . U 9 HOH E 1 401 459 HOH HOH . U 9 HOH E 2 402 444 HOH HOH . U 9 HOH E 3 403 424 HOH HOH . U 9 HOH E 4 404 420 HOH HOH . U 9 HOH E 5 405 454 HOH HOH . U 9 HOH E 6 406 417 HOH HOH . U 9 HOH E 7 407 452 HOH HOH . U 9 HOH E 8 408 405 HOH HOH . U 9 HOH E 9 409 440 HOH HOH . U 9 HOH E 10 410 427 HOH HOH . U 9 HOH E 11 411 413 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 8 6.289 1.398 -12.666 1 114.9 ? S SO4 306 A 1 HETATM 2 O O1 SO4 . . . K 8 7.497 1.469 -13.524 1 116.01 ? O1 SO4 306 A 1 HETATM 3 O O2 SO4 . . . K 8 5.084 1.594 -13.514 1 112.61 ? O2 SO4 306 A 1 HETATM 4 O O3 SO4 . . . K 8 6.215 0.078 -11.997 1 108.62 ? O3 SO4 306 A 1 HETATM 5 O O4 SO4 . . . K 8 6.371 2.452 -11.623 1 115.76 ? O4 SO4 306 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 5 #