data_5MEP # _model_server_result.job_id f4ATMhreZHmiW6f9qTPf9w _model_server_result.datetime_utc '2024-11-21 23:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":101}' # _entry.id 5MEP # _exptl.entry_id 5MEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MEP _cell.length_a 119.41 _cell.length_b 169.55 _cell.length_c 47.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,S,T,U 1 1 D,E,F,N,O,P,Q,R,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5MEP _atom_sites.fract_transf_matrix[1][1] 0.008375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO A 1 301 305 EDO EDO . H 5 SO4 A 1 302 321 SO4 SO4 . I 4 EDO B 1 101 302 EDO EDO . J 4 EDO B 1 102 303 EDO EDO . K 4 EDO B 1 103 306 EDO EDO . L 4 EDO B 1 104 307 EDO EDO . M 4 EDO B 1 105 309 EDO EDO . N 4 EDO D 1 301 301 EDO EDO . O 4 EDO D 1 302 304 EDO EDO . P 4 EDO D 1 303 310 EDO EDO . Q 4 EDO D 1 304 311 EDO EDO . R 4 EDO E 1 101 308 EDO EDO . S 6 HOH A 1 401 425 HOH HOH . S 6 HOH A 2 402 429 HOH HOH . S 6 HOH A 3 403 445 HOH HOH . S 6 HOH A 4 404 401 HOH HOH . S 6 HOH A 5 405 423 HOH HOH . S 6 HOH A 6 406 415 HOH HOH . S 6 HOH A 7 407 478 HOH HOH . S 6 HOH A 8 408 437 HOH HOH . S 6 HOH A 9 409 412 HOH HOH . S 6 HOH A 10 410 457 HOH HOH . S 6 HOH A 11 411 422 HOH HOH . S 6 HOH A 12 412 467 HOH HOH . S 6 HOH A 13 413 461 HOH HOH . S 6 HOH A 14 414 463 HOH HOH . S 6 HOH A 15 415 411 HOH HOH . S 6 HOH A 16 416 432 HOH HOH . S 6 HOH A 17 417 449 HOH HOH . S 6 HOH A 18 418 473 HOH HOH . S 6 HOH A 19 419 427 HOH HOH . S 6 HOH A 20 420 472 HOH HOH . S 6 HOH A 21 421 436 HOH HOH . S 6 HOH A 22 422 419 HOH HOH . S 6 HOH A 23 423 468 HOH HOH . S 6 HOH A 24 424 443 HOH HOH . S 6 HOH A 25 425 440 HOH HOH . S 6 HOH A 26 426 416 HOH HOH . S 6 HOH A 27 427 438 HOH HOH . S 6 HOH A 28 428 405 HOH HOH . S 6 HOH A 29 429 406 HOH HOH . T 6 HOH B 1 201 458 HOH HOH . T 6 HOH B 2 202 480 HOH HOH . T 6 HOH B 3 203 456 HOH HOH . T 6 HOH B 4 204 475 HOH HOH . T 6 HOH B 5 205 424 HOH HOH . T 6 HOH B 6 206 434 HOH HOH . T 6 HOH B 7 207 469 HOH HOH . T 6 HOH B 8 208 471 HOH HOH . T 6 HOH B 9 209 409 HOH HOH . T 6 HOH B 10 210 450 HOH HOH . T 6 HOH B 11 211 402 HOH HOH . U 6 HOH C 1 101 403 HOH HOH . U 6 HOH C 2 102 479 HOH HOH . U 6 HOH C 3 103 417 HOH HOH . V 6 HOH D 1 401 455 HOH HOH . V 6 HOH D 2 402 428 HOH HOH . V 6 HOH D 3 403 460 HOH HOH . V 6 HOH D 4 404 465 HOH HOH . V 6 HOH D 5 405 477 HOH HOH . V 6 HOH D 6 406 481 HOH HOH . V 6 HOH D 7 407 404 HOH HOH . V 6 HOH D 8 408 444 HOH HOH . V 6 HOH D 9 409 446 HOH HOH . V 6 HOH D 10 410 433 HOH HOH . V 6 HOH D 11 411 482 HOH HOH . V 6 HOH D 12 412 441 HOH HOH . V 6 HOH D 13 413 476 HOH HOH . V 6 HOH D 14 414 447 HOH HOH . V 6 HOH D 15 415 431 HOH HOH . V 6 HOH D 16 416 426 HOH HOH . V 6 HOH D 17 417 407 HOH HOH . V 6 HOH D 18 418 452 HOH HOH . V 6 HOH D 19 419 430 HOH HOH . V 6 HOH D 20 420 408 HOH HOH . V 6 HOH D 21 421 454 HOH HOH . V 6 HOH D 22 422 448 HOH HOH . V 6 HOH D 23 423 439 HOH HOH . V 6 HOH D 24 424 414 HOH HOH . V 6 HOH D 25 425 442 HOH HOH . W 6 HOH E 1 201 466 HOH HOH . W 6 HOH E 2 202 421 HOH HOH . W 6 HOH E 3 203 459 HOH HOH . W 6 HOH E 4 204 464 HOH HOH . W 6 HOH E 5 205 453 HOH HOH . W 6 HOH E 6 206 420 HOH HOH . W 6 HOH E 7 207 474 HOH HOH . W 6 HOH E 8 208 451 HOH HOH . W 6 HOH E 9 209 413 HOH HOH . W 6 HOH E 10 210 410 HOH HOH . W 6 HOH E 11 211 462 HOH HOH . W 6 HOH E 12 212 435 HOH HOH . W 6 HOH E 13 213 470 HOH HOH . X 6 HOH F 1 101 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 4 -55.951 64.798 -13.861 1 63.07 ? C1 EDO 101 E 1 HETATM 2 O O1 EDO . . . R 4 -56.042 66.188 -13.493 1 60.33 ? O1 EDO 101 E 1 HETATM 3 C C2 EDO . . . R 4 -54.495 64.338 -14.091 1 61.27 ? C2 EDO 101 E 1 HETATM 4 O O2 EDO . . . R 4 -54.431 63.021 -14.718 1 54.95 ? O2 EDO 101 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #