data_5MEP
#
_model_server_result.job_id            RyWH7T-wtlygpb8SP7G8uQ 
_model_server_result.datetime_utc      '2024-11-24 20:16:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mep 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":302}' 
#
_entry.id    5MEP 
#
_exptl.entry_id    5MEP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MEP 
_cell.length_a            119.41 
_cell.length_b            169.55 
_cell.length_c            47.05 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MEP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,S,T,U 1 1 
D,E,F,N,O,P,Q,R,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5MEP 
_atom_sites.fract_transf_matrix[1][1]    0.008375 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021254 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EDO A 1 301 305 EDO EDO . 
H 5 SO4 A 1 302 321 SO4 SO4 . 
I 4 EDO B 1 101 302 EDO EDO . 
J 4 EDO B 1 102 303 EDO EDO . 
K 4 EDO B 1 103 306 EDO EDO . 
L 4 EDO B 1 104 307 EDO EDO . 
M 4 EDO B 1 105 309 EDO EDO . 
N 4 EDO D 1 301 301 EDO EDO . 
O 4 EDO D 1 302 304 EDO EDO . 
P 4 EDO D 1 303 310 EDO EDO . 
Q 4 EDO D 1 304 311 EDO EDO . 
R 4 EDO E 1 101 308 EDO EDO . 
S 6 HOH A 1 401 425 HOH HOH . 
S 6 HOH A 2 402 429 HOH HOH . 
S 6 HOH A 3 403 445 HOH HOH . 
S 6 HOH A 4 404 401 HOH HOH . 
S 6 HOH A 5 405 423 HOH HOH . 
S 6 HOH A 6 406 415 HOH HOH . 
S 6 HOH A 7 407 478 HOH HOH . 
S 6 HOH A 8 408 437 HOH HOH . 
S 6 HOH A 9 409 412 HOH HOH . 
S 6 HOH A 10 410 457 HOH HOH . 
S 6 HOH A 11 411 422 HOH HOH . 
S 6 HOH A 12 412 467 HOH HOH . 
S 6 HOH A 13 413 461 HOH HOH . 
S 6 HOH A 14 414 463 HOH HOH . 
S 6 HOH A 15 415 411 HOH HOH . 
S 6 HOH A 16 416 432 HOH HOH . 
S 6 HOH A 17 417 449 HOH HOH . 
S 6 HOH A 18 418 473 HOH HOH . 
S 6 HOH A 19 419 427 HOH HOH . 
S 6 HOH A 20 420 472 HOH HOH . 
S 6 HOH A 21 421 436 HOH HOH . 
S 6 HOH A 22 422 419 HOH HOH . 
S 6 HOH A 23 423 468 HOH HOH . 
S 6 HOH A 24 424 443 HOH HOH . 
S 6 HOH A 25 425 440 HOH HOH . 
S 6 HOH A 26 426 416 HOH HOH . 
S 6 HOH A 27 427 438 HOH HOH . 
S 6 HOH A 28 428 405 HOH HOH . 
S 6 HOH A 29 429 406 HOH HOH . 
T 6 HOH B 1 201 458 HOH HOH . 
T 6 HOH B 2 202 480 HOH HOH . 
T 6 HOH B 3 203 456 HOH HOH . 
T 6 HOH B 4 204 475 HOH HOH . 
T 6 HOH B 5 205 424 HOH HOH . 
T 6 HOH B 6 206 434 HOH HOH . 
T 6 HOH B 7 207 469 HOH HOH . 
T 6 HOH B 8 208 471 HOH HOH . 
T 6 HOH B 9 209 409 HOH HOH . 
T 6 HOH B 10 210 450 HOH HOH . 
T 6 HOH B 11 211 402 HOH HOH . 
U 6 HOH C 1 101 403 HOH HOH . 
U 6 HOH C 2 102 479 HOH HOH . 
U 6 HOH C 3 103 417 HOH HOH . 
V 6 HOH D 1 401 455 HOH HOH . 
V 6 HOH D 2 402 428 HOH HOH . 
V 6 HOH D 3 403 460 HOH HOH . 
V 6 HOH D 4 404 465 HOH HOH . 
V 6 HOH D 5 405 477 HOH HOH . 
V 6 HOH D 6 406 481 HOH HOH . 
V 6 HOH D 7 407 404 HOH HOH . 
V 6 HOH D 8 408 444 HOH HOH . 
V 6 HOH D 9 409 446 HOH HOH . 
V 6 HOH D 10 410 433 HOH HOH . 
V 6 HOH D 11 411 482 HOH HOH . 
V 6 HOH D 12 412 441 HOH HOH . 
V 6 HOH D 13 413 476 HOH HOH . 
V 6 HOH D 14 414 447 HOH HOH . 
V 6 HOH D 15 415 431 HOH HOH . 
V 6 HOH D 16 416 426 HOH HOH . 
V 6 HOH D 17 417 407 HOH HOH . 
V 6 HOH D 18 418 452 HOH HOH . 
V 6 HOH D 19 419 430 HOH HOH . 
V 6 HOH D 20 420 408 HOH HOH . 
V 6 HOH D 21 421 454 HOH HOH . 
V 6 HOH D 22 422 448 HOH HOH . 
V 6 HOH D 23 423 439 HOH HOH . 
V 6 HOH D 24 424 414 HOH HOH . 
V 6 HOH D 25 425 442 HOH HOH . 
W 6 HOH E 1 201 466 HOH HOH . 
W 6 HOH E 2 202 421 HOH HOH . 
W 6 HOH E 3 203 459 HOH HOH . 
W 6 HOH E 4 204 464 HOH HOH . 
W 6 HOH E 5 205 453 HOH HOH . 
W 6 HOH E 6 206 420 HOH HOH . 
W 6 HOH E 7 207 474 HOH HOH . 
W 6 HOH E 8 208 451 HOH HOH . 
W 6 HOH E 9 209 413 HOH HOH . 
W 6 HOH E 10 210 410 HOH HOH . 
W 6 HOH E 11 211 462 HOH HOH . 
W 6 HOH E 12 212 435 HOH HOH . 
W 6 HOH E 13 213 470 HOH HOH . 
X 6 HOH F 1 101 418 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . O 4 -64.349 60.352 -8.375 1 63.95 ? C1 EDO 302 D 1 
HETATM 2 O O1 EDO . . . O 4 -64.725 59.562 -7.233 1 62.89 ? O1 EDO 302 D 1 
HETATM 3 C C2 EDO . . . O 4 -65.261 61.577 -8.514 1 65.03 ? C2 EDO 302 D 1 
HETATM 4 O O2 EDO . . . O 4 -65.311 62.316 -7.277 1 65.14 ? O2 EDO 302 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#