data_5MEX # _model_server_result.job_id rrucKt65zkYhadFcDRx_jw _model_server_result.datetime_utc '2024-11-23 21:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5MEX # _exptl.entry_id 5MEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MEX _cell.length_a 63.82 _cell.length_b 63.82 _cell.length_c 209.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 98 n n C1 C2 EDO sing 99 n n C1 H11 EDO sing 100 n n C1 H12 EDO sing 101 n n O1 HO1 EDO sing 102 n n C2 O2 EDO sing 103 n n C2 H21 EDO sing 104 n n C2 H22 EDO sing 105 n n O2 HO2 EDO sing 106 n n # _atom_sites.entry_id 5MEX _atom_sites.fract_transf_matrix[1][1] 0.015669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PAP A 1 401 1 PAP PAP . C 3 SZZ A 1 402 2 SZZ SZZ . D 4 EDO A 1 403 1 EDO EDO . E 4 EDO A 1 404 2 EDO EDO . F 4 EDO A 1 405 3 EDO EDO . G 4 EDO A 1 406 4 EDO EDO . H 4 EDO A 1 407 5 EDO EDO . I 4 EDO A 1 408 6 EDO EDO . J 4 EDO A 1 409 8 EDO EDO . K 4 EDO A 1 410 9 EDO EDO . L 4 EDO A 1 411 10 EDO EDO . M 4 EDO A 1 412 12 EDO EDO . N 5 BU2 A 1 413 2 BU2 BU2 . O 6 HOH A 1 501 182 HOH HOH . O 6 HOH A 2 502 152 HOH HOH . O 6 HOH A 3 503 306 HOH HOH . O 6 HOH A 4 504 77 HOH HOH . O 6 HOH A 5 505 166 HOH HOH . O 6 HOH A 6 506 284 HOH HOH . O 6 HOH A 7 507 308 HOH HOH . O 6 HOH A 8 508 100 HOH HOH . O 6 HOH A 9 509 237 HOH HOH . O 6 HOH A 10 510 158 HOH HOH . O 6 HOH A 11 511 136 HOH HOH . O 6 HOH A 12 512 118 HOH HOH . O 6 HOH A 13 513 164 HOH HOH . O 6 HOH A 14 514 288 HOH HOH . O 6 HOH A 15 515 170 HOH HOH . O 6 HOH A 16 516 61 HOH HOH . O 6 HOH A 17 517 116 HOH HOH . O 6 HOH A 18 518 200 HOH HOH . O 6 HOH A 19 519 108 HOH HOH . O 6 HOH A 20 520 163 HOH HOH . O 6 HOH A 21 521 231 HOH HOH . O 6 HOH A 22 522 138 HOH HOH . O 6 HOH A 23 523 95 HOH HOH . O 6 HOH A 24 524 225 HOH HOH . O 6 HOH A 25 525 91 HOH HOH . O 6 HOH A 26 526 65 HOH HOH . O 6 HOH A 27 527 33 HOH HOH . O 6 HOH A 28 528 10 HOH HOH . O 6 HOH A 29 529 75 HOH HOH . O 6 HOH A 30 530 147 HOH HOH . O 6 HOH A 31 531 45 HOH HOH . O 6 HOH A 32 532 88 HOH HOH . O 6 HOH A 33 533 31 HOH HOH . O 6 HOH A 34 534 160 HOH HOH . O 6 HOH A 35 535 110 HOH HOH . O 6 HOH A 36 536 78 HOH HOH . O 6 HOH A 37 537 188 HOH HOH . O 6 HOH A 38 538 50 HOH HOH . O 6 HOH A 39 539 55 HOH HOH . O 6 HOH A 40 540 42 HOH HOH . O 6 HOH A 41 541 97 HOH HOH . O 6 HOH A 42 542 36 HOH HOH . O 6 HOH A 43 543 32 HOH HOH . O 6 HOH A 44 544 34 HOH HOH . O 6 HOH A 45 545 123 HOH HOH . O 6 HOH A 46 546 53 HOH HOH . O 6 HOH A 47 547 14 HOH HOH . O 6 HOH A 48 548 72 HOH HOH . O 6 HOH A 49 549 43 HOH HOH . O 6 HOH A 50 550 141 HOH HOH . O 6 HOH A 51 551 142 HOH HOH . O 6 HOH A 52 552 62 HOH HOH . O 6 HOH A 53 553 15 HOH HOH . O 6 HOH A 54 554 35 HOH HOH . O 6 HOH A 55 555 289 HOH HOH . O 6 HOH A 56 556 145 HOH HOH . O 6 HOH A 57 557 196 HOH HOH . O 6 HOH A 58 558 161 HOH HOH . O 6 HOH A 59 559 254 HOH HOH . O 6 HOH A 60 560 263 HOH HOH . O 6 HOH A 61 561 223 HOH HOH . O 6 HOH A 62 562 66 HOH HOH . O 6 HOH A 63 563 44 HOH HOH . O 6 HOH A 64 564 80 HOH HOH . O 6 HOH A 65 565 79 HOH HOH . O 6 HOH A 66 566 313 HOH HOH . O 6 HOH A 67 567 101 HOH HOH . O 6 HOH A 68 568 132 HOH HOH . O 6 HOH A 69 569 283 HOH HOH . O 6 HOH A 70 570 310 HOH HOH . O 6 HOH A 71 571 83 HOH HOH . O 6 HOH A 72 572 67 HOH HOH . O 6 HOH A 73 573 124 HOH HOH . O 6 HOH A 74 574 19 HOH HOH . O 6 HOH A 75 575 56 HOH HOH . O 6 HOH A 76 576 114 HOH HOH . O 6 HOH A 77 577 115 HOH HOH . O 6 HOH A 78 578 293 HOH HOH . O 6 HOH A 79 579 57 HOH HOH . O 6 HOH A 80 580 87 HOH HOH . O 6 HOH A 81 581 236 HOH HOH . O 6 HOH A 82 582 242 HOH HOH . O 6 HOH A 83 583 58 HOH HOH . O 6 HOH A 84 584 76 HOH HOH . O 6 HOH A 85 585 224 HOH HOH . O 6 HOH A 86 586 49 HOH HOH . O 6 HOH A 87 587 168 HOH HOH . O 6 HOH A 88 588 286 HOH HOH . O 6 HOH A 89 589 59 HOH HOH . O 6 HOH A 90 590 192 HOH HOH . O 6 HOH A 91 591 111 HOH HOH . O 6 HOH A 92 592 74 HOH HOH . O 6 HOH A 93 593 149 HOH HOH . O 6 HOH A 94 594 71 HOH HOH . O 6 HOH A 95 595 247 HOH HOH . O 6 HOH A 96 596 291 HOH HOH . O 6 HOH A 97 597 30 HOH HOH . O 6 HOH A 98 598 226 HOH HOH . O 6 HOH A 99 599 194 HOH HOH . O 6 HOH A 100 600 205 HOH HOH . O 6 HOH A 101 601 125 HOH HOH . O 6 HOH A 102 602 150 HOH HOH . O 6 HOH A 103 603 174 HOH HOH . O 6 HOH A 104 604 119 HOH HOH . O 6 HOH A 105 605 159 HOH HOH . O 6 HOH A 106 606 198 HOH HOH . O 6 HOH A 107 607 197 HOH HOH . O 6 HOH A 108 608 222 HOH HOH . O 6 HOH A 109 609 109 HOH HOH . O 6 HOH A 110 610 133 HOH HOH . O 6 HOH A 111 611 245 HOH HOH . O 6 HOH A 112 612 3 HOH HOH . O 6 HOH A 113 613 16 HOH HOH . O 6 HOH A 114 614 272 HOH HOH . O 6 HOH A 115 615 105 HOH HOH . O 6 HOH A 116 616 282 HOH HOH . O 6 HOH A 117 617 22 HOH HOH . O 6 HOH A 118 618 292 HOH HOH . O 6 HOH A 119 619 23 HOH HOH . O 6 HOH A 120 620 98 HOH HOH . O 6 HOH A 121 621 103 HOH HOH . O 6 HOH A 122 622 60 HOH HOH . O 6 HOH A 123 623 94 HOH HOH . O 6 HOH A 124 624 238 HOH HOH . O 6 HOH A 125 625 73 HOH HOH . O 6 HOH A 126 626 243 HOH HOH . O 6 HOH A 127 627 172 HOH HOH . O 6 HOH A 128 628 179 HOH HOH . O 6 HOH A 129 629 96 HOH HOH . O 6 HOH A 130 630 46 HOH HOH . O 6 HOH A 131 631 13 HOH HOH . O 6 HOH A 132 632 51 HOH HOH . O 6 HOH A 133 633 241 HOH HOH . O 6 HOH A 134 634 54 HOH HOH . O 6 HOH A 135 635 25 HOH HOH . O 6 HOH A 136 636 195 HOH HOH . O 6 HOH A 137 637 248 HOH HOH . O 6 HOH A 138 638 26 HOH HOH . O 6 HOH A 139 639 21 HOH HOH . O 6 HOH A 140 640 233 HOH HOH . O 6 HOH A 141 641 7 HOH HOH . O 6 HOH A 142 642 203 HOH HOH . O 6 HOH A 143 643 317 HOH HOH . O 6 HOH A 144 644 29 HOH HOH . O 6 HOH A 145 645 39 HOH HOH . O 6 HOH A 146 646 232 HOH HOH . O 6 HOH A 147 647 48 HOH HOH . O 6 HOH A 148 648 104 HOH HOH . O 6 HOH A 149 649 305 HOH HOH . O 6 HOH A 150 650 228 HOH HOH . O 6 HOH A 151 651 178 HOH HOH . O 6 HOH A 152 652 212 HOH HOH . O 6 HOH A 153 653 17 HOH HOH . O 6 HOH A 154 654 27 HOH HOH . O 6 HOH A 155 655 246 HOH HOH . O 6 HOH A 156 656 112 HOH HOH . O 6 HOH A 157 657 229 HOH HOH . O 6 HOH A 158 658 126 HOH HOH . O 6 HOH A 159 659 8 HOH HOH . O 6 HOH A 160 660 11 HOH HOH . O 6 HOH A 161 661 28 HOH HOH . O 6 HOH A 162 662 234 HOH HOH . O 6 HOH A 163 663 162 HOH HOH . O 6 HOH A 164 664 106 HOH HOH . O 6 HOH A 165 665 297 HOH HOH . O 6 HOH A 166 666 129 HOH HOH . O 6 HOH A 167 667 18 HOH HOH . O 6 HOH A 168 668 128 HOH HOH . O 6 HOH A 169 669 239 HOH HOH . O 6 HOH A 170 670 1 HOH HOH . O 6 HOH A 171 671 253 HOH HOH . O 6 HOH A 172 672 64 HOH HOH . O 6 HOH A 173 673 157 HOH HOH . O 6 HOH A 174 674 269 HOH HOH . O 6 HOH A 175 675 99 HOH HOH . O 6 HOH A 176 676 134 HOH HOH . O 6 HOH A 177 677 92 HOH HOH . O 6 HOH A 178 678 312 HOH HOH . O 6 HOH A 179 679 249 HOH HOH . O 6 HOH A 180 680 63 HOH HOH . O 6 HOH A 181 681 165 HOH HOH . O 6 HOH A 182 682 70 HOH HOH . O 6 HOH A 183 683 235 HOH HOH . O 6 HOH A 184 684 267 HOH HOH . O 6 HOH A 185 685 47 HOH HOH . O 6 HOH A 186 686 89 HOH HOH . O 6 HOH A 187 687 2 HOH HOH . O 6 HOH A 188 688 131 HOH HOH . O 6 HOH A 189 689 107 HOH HOH . O 6 HOH A 190 690 264 HOH HOH . O 6 HOH A 191 691 304 HOH HOH . O 6 HOH A 192 692 294 HOH HOH . O 6 HOH A 193 693 311 HOH HOH . O 6 HOH A 194 694 120 HOH HOH . O 6 HOH A 195 695 167 HOH HOH . O 6 HOH A 196 696 81 HOH HOH . O 6 HOH A 197 697 156 HOH HOH . O 6 HOH A 198 698 37 HOH HOH . O 6 HOH A 199 699 69 HOH HOH . O 6 HOH A 200 700 12 HOH HOH . O 6 HOH A 201 701 257 HOH HOH . O 6 HOH A 202 702 127 HOH HOH . O 6 HOH A 203 703 298 HOH HOH . O 6 HOH A 204 704 144 HOH HOH . O 6 HOH A 205 705 270 HOH HOH . O 6 HOH A 206 706 137 HOH HOH . O 6 HOH A 207 707 169 HOH HOH . O 6 HOH A 208 708 85 HOH HOH . O 6 HOH A 209 709 295 HOH HOH . O 6 HOH A 210 710 214 HOH HOH . O 6 HOH A 211 711 68 HOH HOH . O 6 HOH A 212 712 315 HOH HOH . O 6 HOH A 213 713 218 HOH HOH . O 6 HOH A 214 714 244 HOH HOH . O 6 HOH A 215 715 175 HOH HOH . O 6 HOH A 216 716 140 HOH HOH . O 6 HOH A 217 717 155 HOH HOH . O 6 HOH A 218 718 258 HOH HOH . O 6 HOH A 219 719 86 HOH HOH . O 6 HOH A 220 720 185 HOH HOH . O 6 HOH A 221 721 90 HOH HOH . O 6 HOH A 222 722 176 HOH HOH . O 6 HOH A 223 723 255 HOH HOH . O 6 HOH A 224 724 290 HOH HOH . O 6 HOH A 225 725 52 HOH HOH . O 6 HOH A 226 726 314 HOH HOH . O 6 HOH A 227 727 151 HOH HOH . O 6 HOH A 228 728 275 HOH HOH . O 6 HOH A 229 729 189 HOH HOH . O 6 HOH A 230 730 260 HOH HOH . O 6 HOH A 231 731 122 HOH HOH . O 6 HOH A 232 732 84 HOH HOH . O 6 HOH A 233 733 113 HOH HOH . O 6 HOH A 234 734 82 HOH HOH . O 6 HOH A 235 735 186 HOH HOH . O 6 HOH A 236 736 210 HOH HOH . O 6 HOH A 237 737 265 HOH HOH . O 6 HOH A 238 738 240 HOH HOH . O 6 HOH A 239 739 143 HOH HOH . O 6 HOH A 240 740 117 HOH HOH . O 6 HOH A 241 741 227 HOH HOH . O 6 HOH A 242 742 180 HOH HOH . O 6 HOH A 243 743 130 HOH HOH . O 6 HOH A 244 744 301 HOH HOH . O 6 HOH A 245 745 302 HOH HOH . O 6 HOH A 246 746 274 HOH HOH . O 6 HOH A 247 747 221 HOH HOH . O 6 HOH A 248 748 280 HOH HOH . O 6 HOH A 249 749 139 HOH HOH . O 6 HOH A 250 750 262 HOH HOH . O 6 HOH A 251 751 273 HOH HOH . O 6 HOH A 252 752 307 HOH HOH . O 6 HOH A 253 753 135 HOH HOH . O 6 HOH A 254 754 309 HOH HOH . O 6 HOH A 255 755 199 HOH HOH . O 6 HOH A 256 756 303 HOH HOH . O 6 HOH A 257 757 220 HOH HOH . O 6 HOH A 258 758 300 HOH HOH . O 6 HOH A 259 759 93 HOH HOH . O 6 HOH A 260 760 268 HOH HOH . O 6 HOH A 261 761 38 HOH HOH . O 6 HOH A 262 762 177 HOH HOH . O 6 HOH A 263 763 278 HOH HOH . O 6 HOH A 264 764 206 HOH HOH . O 6 HOH A 265 765 202 HOH HOH . O 6 HOH A 266 766 251 HOH HOH . O 6 HOH A 267 767 148 HOH HOH . O 6 HOH A 268 768 296 HOH HOH . O 6 HOH A 269 769 102 HOH HOH . O 6 HOH A 270 770 215 HOH HOH . O 6 HOH A 271 771 285 HOH HOH . O 6 HOH A 272 772 316 HOH HOH . O 6 HOH A 273 773 211 HOH HOH . O 6 HOH A 274 774 209 HOH HOH . O 6 HOH A 275 775 299 HOH HOH . O 6 HOH A 276 776 219 HOH HOH . O 6 HOH A 277 777 213 HOH HOH . O 6 HOH A 278 778 173 HOH HOH . O 6 HOH A 279 779 256 HOH HOH . O 6 HOH A 280 780 171 HOH HOH . O 6 HOH A 281 781 154 HOH HOH . O 6 HOH A 282 782 261 HOH HOH . O 6 HOH A 283 783 279 HOH HOH . O 6 HOH A 284 784 204 HOH HOH . O 6 HOH A 285 785 216 HOH HOH . O 6 HOH A 286 786 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -5.364 15.942 -8.071 1 34.27 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . G 4 -6.677 16.485 -8.281 1 27.68 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . G 4 -5.372 14.411 -7.737 1 39.7 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . G 4 -6.075 14.29 -6.516 1 46.47 ? O2 EDO 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #