data_5MF1
#
_model_server_result.job_id            FGyN1LWEjJ0sN0NyzSjHCQ 
_model_server_result.datetime_utc      '2024-10-20 00:49:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mf1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1001}' 
#
_entry.id    5MF1 
#
_exptl.entry_id    5MF1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MF1 
_cell.length_a            103.97 
_cell.length_b            114.06 
_cell.length_c            137.42 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MF1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 33 1_555 A SG CYS 24 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 116 A CYS 136 1_555 A SG CYS 144 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 A SG CYS 127 A CYS 147 1_555 A SG CYS 190 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 145 A CYS 165 1_555 A SG CYS 363 A CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 147 A CYS 167 1_555 A SG CYS 170 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf6 A SG CYS 346 A CYS 366 1_555 A SG CYS 370 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf7 A SG CYS 455 A CYS 475 1_555 A SG CYS 462 A CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf8 A SG CYS 495 A CYS 515 1_555 A SG CYS 536 A CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf9 B SG CYS 13 B CYS 33 1_555 B SG CYS 24 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 B SG CYS 116 B CYS 136 1_555 B SG CYS 144 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 B SG CYS 127 B CYS 147 1_555 B SG CYS 190 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 B SG CYS 145 B CYS 165 1_555 B SG CYS 363 B CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 B SG CYS 147 B CYS 167 1_555 B SG CYS 170 B CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 B SG CYS 346 B CYS 366 1_555 B SG CYS 370 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf15 B SG CYS 455 B CYS 475 1_555 B SG CYS 462 B CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf16 B SG CYS 495 B CYS 515 1_555 B SG CYS 536 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf17 C SG CYS 13 C CYS 33 1_555 C SG CYS 24 C CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf18 C SG CYS 116 C CYS 136 1_555 C SG CYS 144 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf19 C SG CYS 127 C CYS 147 1_555 C SG CYS 190 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 C SG CYS 145 C CYS 165 1_555 C SG CYS 363 C CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf21 C SG CYS 147 C CYS 167 1_555 C SG CYS 170 C CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf22 C SG CYS 346 C CYS 366 1_555 C SG CYS 370 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf23 C SG CYS 455 C CYS 475 1_555 C SG CYS 462 C CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf24 C SG CYS 495 C CYS 515 1_555 C SG CYS 536 C CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A ND2 ASN 477 A ASN 497 1_555 D C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 A OG1 THR 557 A THR 577 1_555 E C1 NGA . A NGA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 B ND2 ASN 477 B ASN 497 1_555 F C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 B OG1 THR 557 B THR 577 1_555 G C1 NGA . B NGA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale5 C ND2 ASN 477 C ASN 497 1_555 H C1 NAG . C NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale6 C OG1 THR 557 C THR 577 1_555 I C1 NGA . C NGA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5MF1 
_atom_sites.fract_transf_matrix[1][1]    0.009618 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 1001 1001 NAG NAG . 
E 3 NGA A 1 1002 1101 NGA NGA . 
F 2 NAG B 1 1001 1001 NAG NAG . 
G 3 NGA B 1 1002 1101 NGA NGA . 
H 2 NAG C 1 1001 1001 NAG NAG . 
I 3 NGA C 1 1002 1101 NGA NGA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 2 -66.189 -58.257 25.706 1 85.71 ? C1 NAG 1001 C 1 
HETATM 2 C C2 NAG . . . H 2 -66.936 -59.586 25.837 1 85.91 ? C2 NAG 1001 C 1 
HETATM 3 C C3 NAG . . . H 2 -68.364 -59.363 25.328 1 86.79 ? C3 NAG 1001 C 1 
HETATM 4 C C4 NAG . . . H 2 -69.059 -58.259 26.123 1 85.16 ? C4 NAG 1001 C 1 
HETATM 5 C C5 NAG . . . H 2 -68.212 -56.986 26.129 1 86.46 ? C5 NAG 1001 C 1 
HETATM 6 C C6 NAG . . . H 2 -68.717 -55.952 27.109 1 88.45 ? C6 NAG 1001 C 1 
HETATM 7 C C7 NAG . . . H 2 -65.217 -61.335 25.502 1 82.6 ? C7 NAG 1001 C 1 
HETATM 8 C C8 NAG . . . H 2 -64.686 -62.363 24.551 1 83.51 ? C8 NAG 1001 C 1 
HETATM 9 N N2 NAG . . . H 2 -66.274 -60.628 25.066 1 84.08 ? N2 NAG 1001 C 1 
HETATM 10 O O3 NAG . . . H 2 -69.119 -60.569 25.397 1 87.65 ? O3 NAG 1001 C 1 
HETATM 11 O O4 NAG . . . H 2 -70.345 -57.984 25.574 1 82.61 ? O4 NAG 1001 C 1 
HETATM 12 O O5 NAG . . . H 2 -66.858 -57.287 26.519 1 86.56 ? O5 NAG 1001 C 1 
HETATM 13 O O6 NAG . . . H 2 -67.8 -54.88 27.269 1 89.88 ? O6 NAG 1001 C 1 
HETATM 14 O O7 NAG . . . H 2 -64.704 -61.141 26.599 1 80.92 ? O7 NAG 1001 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#