data_5MF4 # _model_server_result.job_id giScPYVBvCXcGZpDDyEC5g _model_server_result.datetime_utc '2025-07-17 18:51:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 5MF4 # _exptl.entry_id 5MF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MF4 _cell.length_a 104.01 _cell.length_b 156.51 _cell.length_c 179.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J C1 GOL . A GOL 504 1_555 O O1S MES . B MES 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 H MG MG . A MG 502 1_555 Y O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc11 H MG MG . A MG 502 1_555 Y O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc12 H MG MG . A MG 502 1_555 Y O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc13 I CA CA . A CA 503 1_555 Y O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc15 L O1A GDP . B GDP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc16 M MG MG . B MG 502 1_555 Z O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc17 M MG MG . B MG 502 1_555 Z O HOH . B HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc18 M MG MG . B MG 502 1_555 Z O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc20 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc21 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc22 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc23 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc24 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc25 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc26 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc27 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc28 Q MG MG . C MG 502 1_555 AA O HOH . C HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc29 Q MG MG . C MG 502 1_555 AA O HOH . C HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc30 Q MG MG . C MG 502 1_555 AA O HOH . C HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc31 Q MG MG . C MG 502 1_555 AA O HOH . C HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc32 R CA CA . C CA 503 1_555 AA O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc33 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc34 D OD2 ASP 177 D ASP 179 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc35 S O1A GDP . D GDP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc36 T MG MG . D MG 502 1_555 BA O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc37 T MG MG . D MG 502 1_555 BA O HOH . D HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc38 F OE1 GLU 331 F GLU 331 1_555 W CA CA . F CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc39 F OE2 GLU 331 F GLU 331 1_555 W CA CA . F CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc40 W CA CA . F CA 401 1_555 X O1G ACP . F ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc41 W CA CA . F CA 401 1_555 X O1B ACP . F ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 224 n n PB O2B GDP sing 225 n n PB O3B GDP sing 226 n n PB O3A GDP sing 227 n n O2B HOB2 GDP sing 228 n n O3B HOB3 GDP sing 229 n n O3A PA GDP sing 230 n n PA O1A GDP doub 231 n n PA O2A GDP sing 232 n n PA O5' GDP sing 233 n n O2A HOA2 GDP sing 234 n n O5' C5' GDP sing 235 n n C5' C4' GDP sing 236 n n C5' H5' GDP sing 237 n n C5' "H5''" GDP sing 238 n n C4' O4' GDP sing 239 n n C4' C3' GDP sing 240 n n C4' H4' GDP sing 241 n n O4' C1' GDP sing 242 n n C3' O3' GDP sing 243 n n C3' C2' GDP sing 244 n n C3' H3' GDP sing 245 n n O3' HO3' GDP sing 246 n n C2' O2' GDP sing 247 n n C2' C1' GDP sing 248 n n C2' H2' GDP sing 249 n n O2' HO2' GDP sing 250 n n C1' N9 GDP sing 251 n n C1' H1' GDP sing 252 n n N9 C8 GDP sing 253 n y N9 C4 GDP sing 254 n y C8 N7 GDP doub 255 n y C8 H8 GDP sing 256 n n N7 C5 GDP sing 257 n y C5 C6 GDP sing 258 n n C5 C4 GDP doub 259 n y C6 O6 GDP doub 260 n n C6 N1 GDP sing 261 n n N1 C2 GDP sing 262 n n N1 HN1 GDP sing 263 n n C2 N2 GDP sing 264 n n C2 N3 GDP doub 265 n n N2 HN21 GDP sing 266 n n N2 HN22 GDP sing 267 n n N3 C4 GDP sing 268 n n # _atom_sites.entry_id 5MF4 _atom_sites.fract_transf_matrix[1][1] 0.009614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GOL A 1 504 506 GOL GOL . K 8 GOL A 1 505 508 GOL GOL . L 9 GDP B 1 501 501 GDP GDP . M 6 MG B 1 502 502 MG MG . N 10 7LZ B 1 503 503 7LZ DIC . O 11 MES B 1 504 507 MES MES . P 5 GTP C 1 501 501 GTP GTP . Q 6 MG C 1 502 502 MG MG . R 7 CA C 1 503 503 CA CA . S 9 GDP D 1 501 501 GDP GDP . T 6 MG D 1 502 502 MG MG . U 10 7LZ D 1 503 503 7LZ DIC . V 11 MES D 1 504 507 MES MES . W 7 CA F 1 401 702 CA CA . X 12 ACP F 1 402 703 ACP ACP . Y 13 HOH A 1 601 109 HOH HOH . Y 13 HOH A 2 602 180 HOH HOH . Y 13 HOH A 3 603 58 HOH HOH . Y 13 HOH A 4 604 149 HOH HOH . Y 13 HOH A 5 605 131 HOH HOH . Y 13 HOH A 6 606 87 HOH HOH . Y 13 HOH A 7 607 125 HOH HOH . Y 13 HOH A 8 608 57 HOH HOH . Y 13 HOH A 9 609 73 HOH HOH . Y 13 HOH A 10 610 21 HOH HOH . Y 13 HOH A 11 611 91 HOH HOH . Y 13 HOH A 12 612 112 HOH HOH . Y 13 HOH A 13 613 45 HOH HOH . Y 13 HOH A 14 614 172 HOH HOH . Y 13 HOH A 15 615 10 HOH HOH . Y 13 HOH A 16 616 1 HOH HOH . Y 13 HOH A 17 617 115 HOH HOH . Y 13 HOH A 18 618 29 HOH HOH . Y 13 HOH A 19 619 198 HOH HOH . Y 13 HOH A 20 620 156 HOH HOH . Y 13 HOH A 21 621 88 HOH HOH . Y 13 HOH A 22 622 20 HOH HOH . Y 13 HOH A 23 623 11 HOH HOH . Y 13 HOH A 24 624 100 HOH HOH . Y 13 HOH A 25 625 135 HOH HOH . Y 13 HOH A 26 626 138 HOH HOH . Y 13 HOH A 27 627 105 HOH HOH . Y 13 HOH A 28 628 35 HOH HOH . Y 13 HOH A 29 629 130 HOH HOH . Y 13 HOH A 30 630 111 HOH HOH . Y 13 HOH A 31 631 144 HOH HOH . Z 13 HOH B 1 601 89 HOH HOH . Z 13 HOH B 2 602 162 HOH HOH . Z 13 HOH B 3 603 181 HOH HOH . Z 13 HOH B 4 604 3 HOH HOH . Z 13 HOH B 5 605 42 HOH HOH . Z 13 HOH B 6 606 155 HOH HOH . Z 13 HOH B 7 607 113 HOH HOH . Z 13 HOH B 8 608 24 HOH HOH . Z 13 HOH B 9 609 85 HOH HOH . Z 13 HOH B 10 610 4 HOH HOH . Z 13 HOH B 11 611 160 HOH HOH . Z 13 HOH B 12 612 31 HOH HOH . Z 13 HOH B 13 613 107 HOH HOH . Z 13 HOH B 14 614 90 HOH HOH . Z 13 HOH B 15 615 92 HOH HOH . Z 13 HOH B 16 616 93 HOH HOH . Z 13 HOH B 17 617 14 HOH HOH . Z 13 HOH B 18 618 114 HOH HOH . Z 13 HOH B 19 619 157 HOH HOH . Z 13 HOH B 20 620 199 HOH HOH . Z 13 HOH B 21 621 129 HOH HOH . Z 13 HOH B 22 622 27 HOH HOH . Z 13 HOH B 23 623 51 HOH HOH . Z 13 HOH B 24 624 55 HOH HOH . Z 13 HOH B 25 625 127 HOH HOH . Z 13 HOH B 26 626 139 HOH HOH . Z 13 HOH B 27 627 189 HOH HOH . AA 13 HOH C 1 601 121 HOH HOH . AA 13 HOH C 2 602 183 HOH HOH . AA 13 HOH C 3 603 96 HOH HOH . AA 13 HOH C 4 604 106 HOH HOH . AA 13 HOH C 5 605 101 HOH HOH . AA 13 HOH C 6 606 9 HOH HOH . AA 13 HOH C 7 607 117 HOH HOH . AA 13 HOH C 8 608 66 HOH HOH . AA 13 HOH C 9 609 65 HOH HOH . AA 13 HOH C 10 610 49 HOH HOH . AA 13 HOH C 11 611 16 HOH HOH . AA 13 HOH C 12 612 8 HOH HOH . AA 13 HOH C 13 613 150 HOH HOH . AA 13 HOH C 14 614 56 HOH HOH . AA 13 HOH C 15 615 119 HOH HOH . AA 13 HOH C 16 616 151 HOH HOH . AA 13 HOH C 17 617 94 HOH HOH . AA 13 HOH C 18 618 174 HOH HOH . AA 13 HOH C 19 619 5 HOH HOH . AA 13 HOH C 20 620 102 HOH HOH . AA 13 HOH C 21 621 78 HOH HOH . AA 13 HOH C 22 622 44 HOH HOH . AA 13 HOH C 23 623 118 HOH HOH . AA 13 HOH C 24 624 2 HOH HOH . AA 13 HOH C 25 625 6 HOH HOH . AA 13 HOH C 26 626 193 HOH HOH . AA 13 HOH C 27 627 47 HOH HOH . AA 13 HOH C 28 628 18 HOH HOH . AA 13 HOH C 29 629 82 HOH HOH . AA 13 HOH C 30 630 79 HOH HOH . AA 13 HOH C 31 631 39 HOH HOH . AA 13 HOH C 32 632 37 HOH HOH . AA 13 HOH C 33 633 152 HOH HOH . AA 13 HOH C 34 634 50 HOH HOH . AA 13 HOH C 35 635 46 HOH HOH . AA 13 HOH C 36 636 69 HOH HOH . AA 13 HOH C 37 637 26 HOH HOH . AA 13 HOH C 38 638 63 HOH HOH . AA 13 HOH C 39 639 32 HOH HOH . AA 13 HOH C 40 640 23 HOH HOH . AA 13 HOH C 41 641 194 HOH HOH . AA 13 HOH C 42 642 143 HOH HOH . AA 13 HOH C 43 643 67 HOH HOH . AA 13 HOH C 44 644 34 HOH HOH . AA 13 HOH C 45 645 41 HOH HOH . AA 13 HOH C 46 646 80 HOH HOH . AA 13 HOH C 47 647 120 HOH HOH . AA 13 HOH C 48 648 7 HOH HOH . AA 13 HOH C 49 649 62 HOH HOH . AA 13 HOH C 50 650 195 HOH HOH . AA 13 HOH C 51 651 81 HOH HOH . AA 13 HOH C 52 652 142 HOH HOH . AA 13 HOH C 53 653 104 HOH HOH . AA 13 HOH C 54 654 70 HOH HOH . AA 13 HOH C 55 655 196 HOH HOH . AA 13 HOH C 56 656 133 HOH HOH . AA 13 HOH C 57 657 86 HOH HOH . BA 13 HOH D 1 601 108 HOH HOH . BA 13 HOH D 2 602 12 HOH HOH . BA 13 HOH D 3 603 153 HOH HOH . BA 13 HOH D 4 604 36 HOH HOH . BA 13 HOH D 5 605 192 HOH HOH . BA 13 HOH D 6 606 191 HOH HOH . BA 13 HOH D 7 607 137 HOH HOH . BA 13 HOH D 8 608 147 HOH HOH . BA 13 HOH D 9 609 30 HOH HOH . BA 13 HOH D 10 610 148 HOH HOH . BA 13 HOH D 11 611 154 HOH HOH . BA 13 HOH D 12 612 161 HOH HOH . CA 13 HOH E 1 201 173 HOH HOH . CA 13 HOH E 2 202 145 HOH HOH . CA 13 HOH E 3 203 84 HOH HOH . CA 13 HOH E 4 204 126 HOH HOH . CA 13 HOH E 5 205 134 HOH HOH . CA 13 HOH E 6 206 99 HOH HOH . CA 13 HOH E 7 207 146 HOH HOH . CA 13 HOH E 8 208 187 HOH HOH . CA 13 HOH E 9 209 179 HOH HOH . DA 13 HOH F 1 501 77 HOH HOH . DA 13 HOH F 2 502 110 HOH HOH . DA 13 HOH F 3 503 124 HOH HOH . DA 13 HOH F 4 504 38 HOH HOH . DA 13 HOH F 5 505 52 HOH HOH . DA 13 HOH F 6 506 197 HOH HOH . DA 13 HOH F 7 507 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . S 9 25.367 -9.966 -43.719 1 83.11 ? PB GDP 501 D 1 HETATM 2 O O1B GDP . . . S 9 24.908 -9.331 -45.017 1 85.57 ? O1B GDP 501 D 1 HETATM 3 O O2B GDP . . . S 9 25.389 -8.877 -42.677 1 100.28 ? O2B GDP 501 D 1 HETATM 4 O O3B GDP . . . S 9 26.758 -10.55 -43.803 1 74.44 ? O3B GDP 501 D 1 HETATM 5 O O3A GDP . . . S 9 24.38 -11.162 -43.271 1 78.9 ? O3A GDP 501 D 1 HETATM 6 P PA GDP . . . S 9 22.794 -10.966 -42.979 1 80.87 ? PA GDP 501 D 1 HETATM 7 O O1A GDP . . . S 9 21.898 -11.457 -44.071 1 87.52 ? O1A GDP 501 D 1 HETATM 8 O O2A GDP . . . S 9 22.407 -9.533 -42.701 1 82.28 ? O2A GDP 501 D 1 HETATM 9 O O5' GDP . . . S 9 22.674 -11.945 -41.705 1 88.57 ? O5' GDP 501 D 1 HETATM 10 C C5' GDP . . . S 9 21.823 -13.091 -41.719 1 81.95 ? C5' GDP 501 D 1 HETATM 11 C C4' GDP . . . S 9 20.81 -12.969 -40.591 1 72.48 ? C4' GDP 501 D 1 HETATM 12 O O4' GDP . . . S 9 20.08 -11.773 -40.829 1 64.55 ? O4' GDP 501 D 1 HETATM 13 C C3' GDP . . . S 9 19.813 -14.107 -40.642 1 75.27 ? C3' GDP 501 D 1 HETATM 14 O O3' GDP . . . S 9 19.624 -14.647 -39.326 1 75.93 ? O3' GDP 501 D 1 HETATM 15 C C2' GDP . . . S 9 18.554 -13.487 -41.231 1 78.25 ? C2' GDP 501 D 1 HETATM 16 O O2' GDP . . . S 9 17.358 -14.049 -40.691 1 87.12 ? O2' GDP 501 D 1 HETATM 17 C C1' GDP . . . S 9 18.685 -12.032 -40.856 1 72.39 ? C1' GDP 501 D 1 HETATM 18 N N9 GDP . . . S 9 18.146 -11.069 -41.827 1 72.29 ? N9 GDP 501 D 1 HETATM 19 C C8 GDP . . . S 9 18.666 -10.801 -43.029 1 75.91 ? C8 GDP 501 D 1 HETATM 20 N N7 GDP . . . S 9 17.943 -9.833 -43.658 1 72.6 ? N7 GDP 501 D 1 HETATM 21 C C5 GDP . . . S 9 16.963 -9.448 -42.828 1 65.83 ? C5 GDP 501 D 1 HETATM 22 C C6 GDP . . . S 9 15.873 -8.455 -42.856 1 71.16 ? C6 GDP 501 D 1 HETATM 23 O O6 GDP . . . S 9 15.683 -7.707 -43.843 1 71.61 ? O6 GDP 501 D 1 HETATM 24 N N1 GDP . . . S 9 15.087 -8.377 -41.777 1 75.98 ? N1 GDP 501 D 1 HETATM 25 C C2 GDP . . . S 9 15.276 -9.142 -40.692 1 74.05 ? C2 GDP 501 D 1 HETATM 26 N N2 GDP . . . S 9 14.43 -8.989 -39.651 1 83.04 ? N2 GDP 501 D 1 HETATM 27 N N3 GDP . . . S 9 16.259 -10.064 -40.596 1 70.42 ? N3 GDP 501 D 1 HETATM 28 C C4 GDP . . . S 9 17.114 -10.26 -41.616 1 69.92 ? C4 GDP 501 D 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 739 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #